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ONTOLOGY REPORT - ANNOTATIONS


Term:nephron tubule formation
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Accession:GO:0072079 term browser browse the term
Definition:The developmental process pertaining to the initial formation of a nephron tubule from unspecified parts. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.


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nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctnnb1 catenin beta 1 JBrowse link NW_004936473 29,999,542 30,034,610 RGD:9068941
G Wnt6 Wnt family member 6 JBrowse link NW_004936569 1,290,061 1,302,672 RGD:9068941
mesonephric duct formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnf1b HNF1 homeobox B JBrowse link NW_004936490 649,551 702,448 RGD:9068941
G Wnt9b Wnt family member 9B JBrowse link NW_004936541 1,899,039 1,939,561 RGD:9068941
mesonephric tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pax2 paired box 2 JBrowse link NW_004936600 4,850,594 4,939,010 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004936495 4,839,496 4,842,906 RGD:9068941
metanephric nephron tubule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pax2 paired box 2 JBrowse link NW_004936600 4,850,594 4,939,010 RGD:9068941
G Pax8 paired box 8 JBrowse link NW_004936783 1,523,658 1,553,464 RGD:9068941
G Sox8 SRY-box transcription factor 8 JBrowse link NW_004936501 128,386 132,648 RGD:9068941
G Sox9 SRY-box transcription factor 9 JBrowse link NW_004936655 1,849,044 1,852,648 RGD:9068941
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004936484 6,780,692 6,800,883 RGD:9068941
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004936484 6,780,692 6,800,883 RGD:9068941
positive regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004936484 6,780,692 6,800,883 RGD:9068941
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004936518 4,291,391 4,310,752 RGD:9068941
G Six1 SIX homeobox 1 JBrowse link NW_004936495 4,839,496 4,842,906 RGD:9068941
G Six4 SIX homeobox 4 JBrowse link NW_004936495 4,887,718 4,900,198 RGD:9068941
regulation of ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004936518 4,291,391 4,310,752 RGD:9068941
specification of anterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osr1 odd-skipped related transcription factor 1 JBrowse link NW_004936493 11,888,024 11,895,058 RGD:9068941
specification of loop of Henle identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hes5 hes family bHLH transcription factor 5 JBrowse link NW_004936737 1,045,496 1,047,865 RGD:9068941
G Irx1 iroquois homeobox 1 JBrowse link NW_004936634 3,130,197 3,135,273 RGD:9068941
G Irx2 iroquois homeobox 2 JBrowse link NW_004936634 3,830,617 3,834,494 RGD:9068941
G Irx3 iroquois homeobox 3 JBrowse link NW_004936475 6,810,678 6,813,186 RGD:9068941
specification of posterior mesonephric tubule identity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osr1 odd-skipped related transcription factor 1 JBrowse link NW_004936493 11,888,024 11,895,058 RGD:9068941
ureteric bud formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004936484 6,780,692 6,800,883 RGD:9068941
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004936518 4,291,391 4,310,752 RGD:9068941
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link NW_004936673 1,394,743 1,399,726 RGD:9068941
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 JBrowse link NW_004936732 1,773,043 1,947,081 RGD:9068941
G Nog noggin JBrowse link NW_004936490 6,262,651 6,264,069 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11931
    developmental process 5574
      anatomical structure morphogenesis 2500
        embryonic morphogenesis 625
          morphogenesis of embryonic epithelium 179
            embryonic epithelial tube formation 152
              nephron tubule formation 20
                mesonephric tubule formation + 11
                metanephric nephron tubule formation + 4
                pronephric nephron tubule formation 0
                specification of nephron tubule identity + 5
Path 2
Term Annotations click to browse term
  biological_process 11931
    developmental process 5574
      anatomical structure development 5216
        multicellular organism development 4783
          system development 4529
            urogenital system development 402
              renal system development 357
                kidney development 343
                  nephron development 160
                    nephron epithelium development 119
                      nephron tubule development 101
                        nephron tubule morphogenesis 82
                          nephron tubule formation 20
                            mesonephric tubule formation + 11
                            metanephric nephron tubule formation + 4
                            pronephric nephron tubule formation 0
                            specification of nephron tubule identity + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.