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ONTOLOGY REPORT - ANNOTATIONS


Term:monocarboxylic acid biosynthetic process
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Accession:GO:0072330 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group.
Synonyms:exact_synonym: monocarboxylic acid anabolism;   monocarboxylic acid biosynthesis;   monocarboxylic acid formation;   monocarboxylic acid synthesis


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1-aminocyclopropane-1-carboxylate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Accs 1-aminocyclopropane-1-carboxylate synthase JBrowse link 3 82,742,830 82,757,273 RGD:1600115
2-oxobutyrate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thnsl2 threonine synthase-like 2 JBrowse link 4 98,976,559 98,997,187 RGD:1624291
RGD:13792537
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 JBrowse link 1 238,222,689 238,264,381 RGD:1624291
RGD:1600115
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 JBrowse link 8 77,640,234 77,719,488 RGD:1624291
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 JBrowse link 1 16,910,043 16,929,465 RGD:1624291
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:2306683
G Dhrs9 dehydrogenase/reductase 9 JBrowse link 3 55,623,671 55,645,883 RGD:1624291
RGD:1600115
G Rdh16 retinol dehydrogenase 16 JBrowse link 7 71,058,150 71,072,685 RGD:1624291
acetate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:2317572
G Acss2 acyl-CoA synthetase short-chain family member 2 JBrowse link 3 151,032,925 151,075,856 RGD:2317572
asparagine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asns asparagine synthetase (glutamine-hydrolyzing) JBrowse link 4 33,742,876 33,761,106 RGD:2316002
RGD:13792537
RGD:1624291
G Asnsd1 asparagine synthetase domain containing 1 JBrowse link 9 52,988,042 53,009,054 RGD:1600115
bile acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1d1 aldo-keto reductase family 1, member D1 JBrowse link 4 65,110,706 65,143,930 RGD:1624291
RGD:1600115
G Amacr alpha-methylacyl-CoA racemase JBrowse link 2 60,949,276 60,961,342 RGD:704372
RGD:1600115
G Baat bile acid CoA:amino acid N-acyltransferase JBrowse link 5 64,768,397 64,777,368 RGD:1624291
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 JBrowse link 9 81,968,285 81,998,213 RGD:1600115
RGD:1624291
G Cyp39a1 cytochrome P450, family 39, subfamily a, polypeptide 1 JBrowse link 9 19,804,079 19,880,346 RGD:1624291
RGD:13792537
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 JBrowse link 5 19,358,734 19,368,431 RGD:70535
RGD:13792537
RGD:1624291
RGD:70534
RGD:1600115
G Cyp7b1 cytochrome P450 family 7 subfamily B member 1 JBrowse link 2 102,701,903 102,871,257 RGD:1298868
RGD:13792537
RGD:1624291
RGD:1600115
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:1624291
G Pex2 peroxisomal biogenesis factor 2 JBrowse link 2 98,251,756 98,269,185 RGD:1624291
G Slc27a2 solute carrier family 27 member 2 JBrowse link 3 119,014,620 119,052,531 RGD:1600115
RGD:13792537
RGD:1624291
G Slc27a5 solute carrier family 27 member 5 JBrowse link 1 65,576,599 65,587,192 RGD:1624291
RGD:13792537
G Star steroidogenic acute regulatory protein JBrowse link 16 71,036,204 71,040,847 RGD:1600081
creatine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gamt guanidinoacetate N-methyltransferase JBrowse link 7 12,314,848 12,317,998 RGD:1359081
RGD:13792537
RGD:1624291
RGD:1600115
RGD:632754
G Gatm glycine amidinotransferase JBrowse link 3 114,711,570 114,728,155 RGD:70746
RGD:13792537
RGD:1600115
RGD:1624291
cyclooxygenase pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdkrb1 bradykinin receptor B1 JBrowse link 6 129,437,423 129,441,553 RGD:1624291
G Ptgs1 prostaglandin-endoperoxide synthase 1 JBrowse link 3 15,560,685 15,582,339 RGD:1624291
RGD:1600115
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:1600115
RGD:1624291
G Sphk1 sphingosine kinase 1 JBrowse link 10 105,498,728 105,504,401 RGD:2311353
dermatan sulfate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chst12 carbohydrate sulfotransferase 12 JBrowse link 12 16,199,975 16,218,404 RGD:1624291
G Chst14 carbohydrate sulfotransferase 14 JBrowse link 3 110,734,105 110,736,162 RGD:1624291
RGD:1600115
G Dse dermatan sulfate epimerase JBrowse link 20 27,703,738 27,784,982 RGD:1624291
fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd3 ATP binding cassette subfamily D member 3 JBrowse link 2 225,335,708 225,389,120 RGD:1624291
RGD:1600115
G Acaca acetyl-CoA carboxylase alpha JBrowse link 10 71,519,392 71,719,910 RGD:2317316
RGD:1624291
RGD:1600115
G Acacb acetyl-CoA carboxylase beta JBrowse link 12 48,127,149 48,238,969 RGD:1624291
G Acly ATP citrate lyase JBrowse link 10 88,392,248 88,442,845 RGD:2317316
RGD:13792537
G Acsf3 acyl-CoA synthetase family member 3 JBrowse link 19 55,594,801 55,635,312 RGD:1624291
G Acsl3 acyl-CoA synthetase long-chain family member 3 JBrowse link 9 84,569,601 84,593,565 RGD:70280
G Acsm1 acyl-CoA synthetase medium-chain family member 1 JBrowse link 1 189,359,374 189,395,277 RGD:1624291
G Acsm2 acyl-CoA synthetase medium-chain family member 2 JBrowse link 1 189,289,957 189,329,007 RGD:13792537
G Acsm3 acyl-CoA synthetase medium-chain family member 3 JBrowse link 1 189,514,504 189,541,233 RGD:1624291
RGD:13792537
G Acsm4 acyl-CoA synthetase medium-chain family member 4 JBrowse link 1 189,432,604 189,458,799 RGD:13792537
G Acsm5 acyl-CoA synthetase medium-chain family member 5 JBrowse link 1 189,240,955 189,270,422 RGD:13792537
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1600115
G Cbr4 carbonyl reductase 4 JBrowse link 16 31,944,328 31,972,553 RGD:1600115
RGD:13792537
RGD:1624291
G Degs1 delta(4)-desaturase, sphingolipid 1 JBrowse link 13 100,665,265 100,672,731 RGD:1600115
G Fa2h fatty acid 2-hydroxylase JBrowse link 19 43,545,380 43,596,788 RGD:1600115
G Fasn fatty acid synthase JBrowse link 10 109,987,735 110,005,901 RGD:2317317
RGD:1624291
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:1624291
G Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 JBrowse link 3 82,924,699 83,048,465 RGD:1600115
G Hsd17b8 hydroxysteroid (17-beta) dehydrogenase 8 JBrowse link 20 3,817,212 3,819,316 RGD:1600115
RGD:13792537
RGD:1624291
G Lipc lipase C, hepatic type JBrowse link 8 77,272,582 77,398,485 RGD:1624291
RGD:1600115
G Lpl lipoprotein lipase JBrowse link 16 22,537,687 22,561,487 RGD:1624291
G Mcat malonyl-CoA-acyl carrier protein transacylase JBrowse link 7 124,412,762 124,424,966 RGD:1624291
RGD:13792537
G Mecr mitochondrial trans-2-enoyl-CoA reductase JBrowse link 5 150,001,281 150,027,407 RGD:1600115
G Mgll monoglyceride lipase JBrowse link 4 120,671,436 120,773,458 RGD:1600115
G Mlycd malonyl-CoA decarboxylase JBrowse link 19 52,032,950 52,048,773 RGD:1600796
RGD:1624291
G Ndufab1 NADH:ubiquinone oxidoreductase subunit AB1 JBrowse link 1 192,044,209 192,057,644 RGD:1600115
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial JBrowse link 15 10,462,380 10,466,496 RGD:13792537
G Pecr peroxisomal trans-2-enoyl-CoA reductase JBrowse link 9 79,601,937 79,630,547 RGD:1600115
G Pla2g1b phospholipase A2 group IB JBrowse link 12 46,879,346 46,890,234 RGD:1624291
RGD:13792537
RGD:8553780
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:1600115
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:1600115
G Prkab1 protein kinase AMP-activated non-catalytic subunit beta 1 JBrowse link 12 46,316,298 46,326,789 RGD:1600115
G Prkab2 protein kinase AMP-activated non-catalytic subunit beta 2 JBrowse link 2 199,831,990 199,847,623 RGD:1600115
G Prkag1 protein kinase AMP-activated non-catalytic subunit gamma 1 JBrowse link 7 140,489,499 140,506,925 RGD:1600115
G Scd stearoyl-CoA desaturase JBrowse link 1 264,159,966 264,173,061 RGD:1304415
RGD:1624291
G Scd2 stearoyl-Coenzyme A desaturase 2 JBrowse link 1 264,059,374 264,072,433 RGD:1580018
G Scd4 stearoyl-coenzyme A desaturase 4 JBrowse link 1 264,094,007 264,105,473 RGD:1624291
fatty acid elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd1 ATP binding cassette subfamily D member 1 JBrowse link X 157,073,860 157,095,652 RGD:1624291
RGD:1600115
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:1624291
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 JBrowse link 17 81,173,238 81,196,012 RGD:1624291
RGD:13792537
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 JBrowse link 11 68,893,684 68,985,635 RGD:1624291
RGD:13792537
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 JBrowse link 8 70,471,572 70,509,874 RGD:1624291
RGD:13792537
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 JBrowse link 5 106,728,401 106,758,068 RGD:1624291
RGD:13792537
G Tecr trans-2,3-enoyl-CoA reductase JBrowse link 19 24,705,478 24,732,024 RGD:1624291
RGD:1600115
fatty acid elongation, monounsaturated fatty acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elovl1 ELOVL fatty acid elongase 1 JBrowse link 5 137,255,868 137,260,486 RGD:1624291
RGD:13792537
G Elovl2 ELOVL fatty acid elongase 2 JBrowse link 17 21,382,461 21,422,413 RGD:13792537
G Elovl3 ELOVL fatty acid elongase 3 JBrowse link 1 265,883,353 265,887,181 RGD:1624291
RGD:13792537
G Elovl4 ELOVL fatty acid elongase 4 JBrowse link 8 91,310,690 91,338,625 RGD:13792537
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:1624291
RGD:13792537
RGD:1600115
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:8554529
RGD:13792537
G Elovl7 ELOVL fatty acid elongase 7 JBrowse link 2 40,373,211 40,386,643 RGD:13792537
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:8554529
RGD:13792537
fatty acid elongation, polyunsaturated fatty acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elovl1 ELOVL fatty acid elongase 1 JBrowse link 5 137,255,868 137,260,486 RGD:13792537
G Elovl2 ELOVL fatty acid elongase 2 JBrowse link 17 21,382,461 21,422,413 RGD:1624291
RGD:13792537
G Elovl3 ELOVL fatty acid elongase 3 JBrowse link 1 265,883,353 265,887,181 RGD:1624291
RGD:13792537
G Elovl4 ELOVL fatty acid elongase 4 JBrowse link 8 91,310,690 91,338,625 RGD:13792537
RGD:1624291
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:8554529
RGD:13792537
RGD:1624291
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:13792537
G Elovl7 ELOVL fatty acid elongase 7 JBrowse link 2 40,373,211 40,386,643 RGD:1624291
RGD:1600115
RGD:13792537
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:13792537
fatty acid elongation, saturated fatty acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elovl1 ELOVL fatty acid elongase 1 JBrowse link 5 137,255,868 137,260,486 RGD:1624291
RGD:13792537
G Elovl2 ELOVL fatty acid elongase 2 JBrowse link 17 21,382,461 21,422,413 RGD:13792537
G Elovl3 ELOVL fatty acid elongase 3 JBrowse link 1 265,883,353 265,887,181 RGD:1624291
RGD:13792537
G Elovl4 ELOVL fatty acid elongase 4 JBrowse link 8 91,310,690 91,338,625 RGD:1624291
RGD:13792537
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:13792537
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:8554529
RGD:13792537
RGD:1624291
G Elovl7 ELOVL fatty acid elongase 7 JBrowse link 2 40,373,211 40,386,643 RGD:1624291
RGD:1600115
RGD:13792537
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:8554529
RGD:13792537
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abat 4-aminobutyrate aminotransferase JBrowse link 10 7,093,406 7,200,439 RGD:9588538
G Gad1 glutamate decarboxylase 1 JBrowse link 3 56,861,440 56,902,139 RGD:6480258
G Slc1a3 solute carrier family 1 member 3 JBrowse link 2 57,860,881 57,935,363 RGD:1624291
RGD:1600115
glycolate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
hepoxilin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox12 arachidonate 12-lipoxygenase, 12S type JBrowse link 10 56,851,734 56,864,049 RGD:8554649
RGD:13792537
G Alox12b arachidonate 12-lipoxygenase, 12R type JBrowse link 10 55,744,646 55,756,524 RGD:8554649
RGD:13792537
G Alox12e arachidonate 12-lipoxygenase, epidermal JBrowse link 10 56,927,676 56,935,141 RGD:13792537
G Alox15 arachidonate 15-lipoxygenase JBrowse link 10 56,953,692 56,962,145 RGD:5509794
RGD:13792537
RGD:8554649
G Alox15b arachidonate 15-lipoxygenase, type B JBrowse link 10 55,773,748 55,783,489 RGD:8554649
RGD:13792537
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:13792537
G Aloxe3 arachidonate lipoxygenase 3 JBrowse link 10 55,711,996 55,735,915 RGD:8554649
RGD:13792537
RGD:1624291
kynurenic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link 16 72,216,326 72,228,098 RGD:1624291
RGD:1600115
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:13513901
L-asparagine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asns asparagine synthetase (glutamine-hydrolyzing) JBrowse link 4 33,742,876 33,761,106 RGD:1600115
lactate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
G Per2 period circadian regulator 2 JBrowse link 9 98,555,154 98,597,362 RGD:1624291
RGD:1600115
lactate biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1624291
G Ldhc lactate dehydrogenase C JBrowse link 1 102,914,875 102,931,843 RGD:1624291
RGD:1600115
leukotriene A4 biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:1624291
RGD:1600115
lipoate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lias lipoic acid synthetase JBrowse link 14 44,507,217 44,524,287 RGD:1624291
RGD:13792537
lipoxin A4 biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox12 arachidonate 12-lipoxygenase, 12S type JBrowse link 10 56,851,734 56,864,049 RGD:1624291
RGD:1600115
G Alox15 arachidonate 15-lipoxygenase JBrowse link 10 56,953,692 56,962,145 RGD:1624291
RGD:1600115
lipoxin B4 biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox12 arachidonate 12-lipoxygenase, 12S type JBrowse link 10 56,851,734 56,864,049 RGD:1624291
RGD:1600115
lipoxin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alox5 arachidonate 5-lipoxygenase JBrowse link 4 148,398,004 148,446,308 RGD:1600115
RGD:1624291
long-chain fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acsbg1 acyl-CoA synthetase bubblegum family member 1 JBrowse link 8 59,184,111 59,240,133 RGD:68727
G Asah2 N-acylsphingosine amidohydrolase 2 JBrowse link 1 250,557,042 250,665,083 RGD:13792537
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:1624291
RGD:1600115
G Fads1 fatty acid desaturase 1 JBrowse link 1 226,234,034 226,249,118 RGD:1624291
G Gstm4 glutathione S-transferase mu 4 JBrowse link 2 210,834,013 210,839,242 RGD:1600115
RGD:1624291
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:1600115
G LOC108348175 protein quaking-like JBrowse link 1 50,828,585 50,936,459 RGD:1600115
G Ltc4s leukotriene C4 synthase JBrowse link 10 35,736,486 35,743,088 RGD:1600115
RGD:1624291
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
RGD:1600115
G Plp1 proteolipid protein 1 JBrowse link X 107,494,326 107,511,355 RGD:1624291
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:1624291
medium-chain fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acot7 acyl-CoA thioesterase 7 JBrowse link 5 169,357,582 169,450,215 RGD:1624291
G Olah oleoyl-ACP hydrolase JBrowse link 17 78,878,673 78,903,919 RGD:13524614
RGD:1624291
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial JBrowse link 15 10,462,380 10,466,496 RGD:1624291
monounsaturated fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC681458 similar to stearoyl-coenzyme A desaturase 3 JBrowse link 1 263,968,156 264,003,991 RGD:1600115
G Scd stearoyl-CoA desaturase JBrowse link 1 264,159,966 264,173,061 RGD:1624291
G Scd2 stearoyl-Coenzyme A desaturase 2 JBrowse link 1 264,059,374 264,072,433 RGD:1624291
RGD:1600115
G Scd4 stearoyl-coenzyme A desaturase 4 JBrowse link 1 264,094,007 264,105,473 RGD:1624291
negative regulation of bile acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf19 fibroblast growth factor 19 JBrowse link 1 218,058,405 218,061,693 RGD:1624291
G Malrd1 MAM and LDL receptor class A domain containing 1 JBrowse link 17 82,430,836 83,156,696 RGD:1624291
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
negative regulation of fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acadl acyl-CoA dehydrogenase, long chain JBrowse link 9 73,833,368 73,871,857 RGD:1624291
G Acadvl acyl-CoA dehydrogenase, very long chain JBrowse link 10 56,619,321 56,624,468 RGD:1624291
RGD:1600115
G Apoc1 apolipoprotein C1 JBrowse link 1 80,606,638 80,609,921 RGD:1624291
G Apoc3 apolipoprotein C3 JBrowse link 8 50,529,318 50,531,498 RGD:1600115
RGD:1624291
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1600115
RGD:13792537
RGD:1624291
G Ceacam1 CEA cell adhesion molecule 1 JBrowse link 1 82,327,955 82,344,345 RGD:11059593
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 JBrowse link 5 19,358,734 19,368,431 RGD:13792517
G Erlin1 ER lipid raft associated 1 JBrowse link 1 263,810,439 263,845,762 RGD:1624291
G Erlin2 ER lipid raft associated 2 JBrowse link 16 69,179,005 69,195,452 RGD:1624291
G Insig1 insulin induced gene 1 JBrowse link 4 342,302 350,515 RGD:1624291
G Insig2 insulin induced gene 2 JBrowse link 13 37,264,818 37,292,718 RGD:1624291
G Trib3 tribbles pseudokinase 3 JBrowse link 3 147,814,056 147,819,650 RGD:1624291
G Wdtc1 WD and tetratricopeptide repeats 1 JBrowse link 5 151,487,572 151,536,829 RGD:1624291
RGD:13792537
negative regulation of prostaglandin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pibf1 progesterone immunomodulatory binding factor 1 JBrowse link 15 83,494,110 83,663,202 RGD:1624291
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1c3 aldo-keto reductase family 1, member C3 JBrowse link 17 69,761,126 69,778,021 RGD:1624291
palmitic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acot7 acyl-CoA thioesterase 7 JBrowse link 5 169,357,582 169,450,215 RGD:1624291
RGD:13792537
positive regulation of bile acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 10 86,683,875 86,690,815 RGD:1600115
RGD:1624291
G Star steroidogenic acute regulatory protein JBrowse link 16 71,036,204 71,040,847 RGD:1624291
G Stard4 StAR-related lipid transfer domain containing 4 JBrowse link 18 25,982,210 25,997,555 RGD:1624291
positive regulation of fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:1624291
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:13792537
G Apoa4 apolipoprotein A4 JBrowse link 8 50,536,983 50,539,371 RGD:1624291
RGD:13792537
RGD:1600115
G Apoa5 apolipoprotein A5 JBrowse link 8 50,559,079 50,561,720 RGD:1624291
RGD:13792537
RGD:1600115
G Apoc2 apolipoprotein C2 JBrowse link 1 80,589,023 80,593,991 RGD:1624291
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:1624291
G Hnf4a hepatocyte nuclear factor 4, alpha JBrowse link 3 159,902,441 159,965,003 RGD:1624995
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
G Lpgat1 lysophosphatidylglycerol acyltransferase 1 JBrowse link 13 110,397,353 110,470,874 RGD:1624291
G Mid1ip1 MID1 interacting protein 1 JBrowse link X 13,114,557 13,119,274 RGD:1624291
RGD:1600115
G Mlxipl MLX interacting protein-like JBrowse link 12 24,590,645 24,619,639 RGD:1624291
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 JBrowse link 1 100,554,577 100,559,896 RGD:1624291
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 JBrowse link 3 80,004,130 80,014,197 RGD:1624291
G Rgn regucalcin JBrowse link X 1,833,484 1,848,904 RGD:9590221
G Slc45a3 solute carrier family 45, member 3 JBrowse link 13 48,745,855 48,766,283 RGD:1624291
positive regulation of prostaglandin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa1 annexin A1 JBrowse link 1 237,893,983 237,910,002 RGD:2306959
RGD:13792537
G Avp arginine vasopressin JBrowse link 3 123,117,482 123,119,460 RGD:2300349
G Avpr1a arginine vasopressin receptor 1A JBrowse link 7 67,341,366 67,345,290 RGD:2300349
G Cd74 CD74 molecule JBrowse link 18 56,071,420 56,080,851 RGD:1624291
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:1600115
RGD:1624291
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:2304243
G Pla2g4a phospholipase A2 group IVA JBrowse link 13 67,062,252 67,206,688 RGD:1642461
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:1624291
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rdh10 retinol dehydrogenase 10 JBrowse link 5 2,605,265 2,631,905 RGD:6771354
G Rdh16 retinol dehydrogenase 16 JBrowse link 7 71,058,150 71,072,685 RGD:6771354
positive regulation of unsaturated fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd1 ATP binding cassette subfamily D member 1 JBrowse link X 157,073,860 157,095,652 RGD:1624291
G Abcd2 ATP binding cassette subfamily D member 2 JBrowse link 7 132,294,564 132,343,169 RGD:1624291
RGD:1600115
propionate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:2317572
G Acss2 acyl-CoA synthetase short-chain family member 2 JBrowse link 3 151,032,925 151,075,856 RGD:2317572
prostaglandin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07034131.1 RGD:13792537
G AABR07054614.1 RGD:1600115
G Cd74 CD74 molecule JBrowse link 18 56,071,420 56,080,851 RGD:1624291
RGD:1600115
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:1624291
G Edn2 endothelin 2 JBrowse link 5 139,098,472 139,106,396 RGD:1624291
RGD:1600115
G Hpgds hematopoietic prostaglandin D synthase JBrowse link 4 95,945,356 95,970,666 RGD:68838
G Mgst1 microsomal glutathione S-transferase 1 JBrowse link 4 172,119,382 172,134,609 RGD:13792537
G Mif macrophage migration inhibitory factor JBrowse link 20 13,715,219 13,732,980 RGD:1624291
G Pla2g4a phospholipase A2 group IVA JBrowse link 13 67,062,252 67,206,688 RGD:1624291
RGD:1600115
G Pla2g4f phospholipase A2, group IVF JBrowse link 3 112,068,617 112,083,978 RGD:1624291
G Pnpla8 patatin-like phospholipase domain containing 8 JBrowse link 6 64,224,870 64,288,465 RGD:1624291
G Prxl2b peroxiredoxin like 2B JBrowse link 5 172,304,799 172,307,402 RGD:1624291
RGD:8552775
RGD:1600115
G Ptgds prostaglandin D2 synthase JBrowse link 3 2,686,125 2,689,059 RGD:8553429
RGD:1624291
G Ptges prostaglandin E synthase JBrowse link 3 9,727,408 9,738,752 RGD:67929
RGD:1624291
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:5688071
RGD:13792537
RGD:1600115
RGD:1624291
G Ptges3l1 prostaglandin E synthase 3-like 1 JBrowse link X 45,410,545 45,419,817 RGD:13792537
G Ptgis prostaglandin I2 synthase JBrowse link 3 163,950,746 163,986,129 RGD:727270
RGD:1624291
RGD:13792537
RGD:1600115
RGD:8693629
G Ptgs1 prostaglandin-endoperoxide synthase 1 JBrowse link 3 15,560,685 15,582,339 RGD:2300259
RGD:1600115
RGD:1624291
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:2300259
RGD:1624291
G Tbxas1 thromboxane A synthase 1 JBrowse link 4 66,624,181 66,846,745 RGD:1624291
RGD:1600115
protein deglycation, glyoxal removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
RGD:13792537
protein deglycation, methylglyoxal removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
pyruvate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link 9 100,281,339 100,291,292 RGD:1599457
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 JBrowse link 1 261,291,742 261,319,743 RGD:1624291
G Pklr pyruvate kinase L/R JBrowse link 2 188,449,158 188,458,034 RGD:2302789
RGD:2302790
G Pkm pyruvate kinase M1/2 JBrowse link 8 64,480,963 64,502,957 RGD:2302790
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:1600115
RGD:1624291
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:1624291
RGD:13792537
regulation of bile acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 JBrowse link 5 19,358,734 19,368,431 RGD:70534
RGD:1624291
G Fgfr4 fibroblast growth factor receptor 4 JBrowse link 17 9,990,072 10,004,339 RGD:1624291
RGD:13792537
RGD:1600115
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
regulation of fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1600115
RGD:1624291
G Gip gastric inhibitory polypeptide JBrowse link 10 83,835,080 83,848,399 RGD:1600115
G Pdk4 pyruvate dehydrogenase kinase 4 JBrowse link 4 30,546,772 30,556,774 RGD:1600115
RGD:1624291
G Scap SREBF chaperone JBrowse link 8 118,551,869 118,628,650 RGD:1624291
regulation of prostaglandin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fabp5 fatty acid binding protein 5 JBrowse link 2 93,981,662 93,985,322 RGD:1624291
retinoic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 JBrowse link 1 238,222,689 238,264,381 RGD:6771354
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 JBrowse link 8 77,640,234 77,719,488 RGD:6771322
RGD:1624291
RGD:1600115
RGD:6771354
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 JBrowse link 1 127,302,920 127,337,828 RGD:6771322
RGD:1624291
RGD:1600115
RGD:6771354
G Crabp2 cellular retinoic acid binding protein 2 JBrowse link 2 187,322,416 187,326,794 RGD:6771322
G Dhrs9 dehydrogenase/reductase 9 JBrowse link 3 55,623,671 55,645,883 RGD:6771322
RGD:6771354
G Rbp1 retinol binding protein 1 JBrowse link 8 106,449,321 106,470,842 RGD:6771322
G Rdh10 retinol dehydrogenase 10 JBrowse link 5 2,605,265 2,631,905 RGD:1624291
short-chain fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial JBrowse link 15 10,462,380 10,466,496 RGD:1624291
unsaturated fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Decr2 2,4-dienoyl-CoA reductase 2 JBrowse link 10 15,451,850 15,460,227 RGD:1624291
G Elovl1 ELOVL fatty acid elongase 1 JBrowse link 5 137,255,868 137,260,486 RGD:1600115
G Elovl2 ELOVL fatty acid elongase 2 JBrowse link 17 21,382,461 21,422,413 RGD:1600115
G Elovl3 ELOVL fatty acid elongase 3 JBrowse link 1 265,883,353 265,887,181 RGD:1600115
G Elovl4 ELOVL fatty acid elongase 4 JBrowse link 8 91,310,690 91,338,625 RGD:1600115
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:1600115
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:1600115
G Elovl7 ELOVL fatty acid elongase 7 JBrowse link 2 40,373,211 40,386,643 RGD:1600115
G Fads1 fatty acid desaturase 1 JBrowse link 1 226,234,034 226,249,118 RGD:632758
RGD:1624291
RGD:1600115
G Fads2 fatty acid desaturase 2 JBrowse link 1 225,906,582 226,152,568 RGD:1600115
G Fads3 fatty acid desaturase 3 JBrowse link 1 226,091,774 226,108,332 RGD:1600115
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:1600115
G LOC681458 similar to stearoyl-coenzyme A desaturase 3 JBrowse link 1 263,968,156 264,003,991 RGD:13792537
G Scd stearoyl-CoA desaturase JBrowse link 1 264,159,966 264,173,061 RGD:10054074
RGD:13792537
RGD:1624291
RGD:10054069
G Scd2 stearoyl-Coenzyme A desaturase 2 JBrowse link 1 264,059,374 264,072,433 RGD:13792537
G Scd4 stearoyl-coenzyme A desaturase 4 JBrowse link 1 264,094,007 264,105,473 RGD:13792537
very long-chain fatty acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elovl1 ELOVL fatty acid elongase 1 JBrowse link 5 137,255,868 137,260,486 RGD:1624291
RGD:13792537
G Elovl2 ELOVL fatty acid elongase 2 JBrowse link 17 21,382,461 21,422,413 RGD:1624291
RGD:13792537
G Elovl3 ELOVL fatty acid elongase 3 JBrowse link 1 265,883,353 265,887,181 RGD:1624291
RGD:13792537
G Elovl4 ELOVL fatty acid elongase 4 JBrowse link 8 91,310,690 91,338,625 RGD:1624291
RGD:13792537
G Elovl5 ELOVL fatty acid elongase 5 JBrowse link 8 85,220,941 85,287,449 RGD:8554529
RGD:13792537
RGD:1624291
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link 2 234,187,490 234,296,124 RGD:13792537
G Elovl7 ELOVL fatty acid elongase 7 JBrowse link 2 40,373,211 40,386,643 RGD:1624291
RGD:1600115
RGD:13792537
G Fads2 fatty acid desaturase 2 JBrowse link 1 225,906,582 226,152,568 RGD:70542
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 JBrowse link 17 81,173,238 81,196,012 RGD:1624291
RGD:13792537
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 JBrowse link 11 68,893,684 68,985,635 RGD:1624291
RGD:13792537
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 JBrowse link 8 70,471,572 70,509,874 RGD:1624291
RGD:13792537
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 JBrowse link 5 106,728,401 106,758,068 RGD:1624291
RGD:13792537
G LOC102549542 elongation of very long chain fatty acids protein 6-like JBrowse link 2 234,375,172 234,486,639 RGD:13792537
G Tecr trans-2,3-enoyl-CoA reductase JBrowse link 19 24,705,478 24,732,024 RGD:1600115
RGD:1624291
RGD:13792537
G Tecrl trans-2,3-enoyl-CoA reductase-like JBrowse link 14 26,662,851 26,735,878 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11641
      small molecule metabolic process 1789
        organic acid metabolic process 1044
          organic acid biosynthetic process 296
            carboxylic acid biosynthetic process 294
              monocarboxylic acid biosynthetic process 189
                (R)-mandelate catabolic process to benzoate 0
                (R)-mevalonic acid biosynthetic process + 0
                1-aminocyclopropane-1-carboxylate biosynthetic process 1
                3,4-dihydroxybenzoate biosynthetic process 0
                3-(2,3-dihydroxyphenyl)propanoate biosynthetic process 0
                3-(3-hydroxyphenyl)propanoate biosynthetic process 0
                4-hydroxyphenylacetate biosynthetic process 0
                L-pipecolic acid biosynthetic process 0
                abscisic acid biosynthetic process + 0
                acetate biosynthetic process + 2
                aldonic acid biosynthetic process + 0
                asparagine biosynthetic process + 2
                bile acid biosynthetic process + 19
                biotin biosynthetic process 0
                chrysobactin biosynthetic process 0
                cinnamic acid biosynthetic process + 0
                clavulanic acid biosynthetic process 0
                coenzyme B biosynthetic process 0
                creatine biosynthetic process 2
                cspyrone B1 biosynthetic process 0
                dermatan sulfate biosynthetic process 3
                dethiobiotin biosynthetic process 0
                ectoine biosynthetic process 0
                endocrocin biosynthetic process + 0
                fatty acid biosynthetic process + 139
                ferulate biosynthetic process 0
                formate biosynthetic process 0
                galacturonate biosynthetic process + 0
                gallate biosynthetic process 0
                gamma-aminobutyric acid biosynthetic process 3
                glucuronate biosynthetic process + 0
                glycolate biosynthetic process + 1
                glycyrrhetinate biosynthetic process 0
                helvolic acid biosynthetic process + 0
                indoleacetic acid biosynthetic process + 0
                jasmonic acid biosynthetic process + 0
                kynurenic acid biosynthetic process 2
                lactate biosynthetic process + 5
                mandelate biosynthetic process 0
                methylgallate biosynthetic process 0
                monensin A biosynthetic process 0
                monodictyphenone biosynthetic process + 0
                nicotinate biosynthetic process 0
                o-orsellinic acid biosynthetic process + 0
                olivetolic acid biosynthetic process 0
                p-cumate biosynthetic process 0
                pantothenate biosynthetic process 0
                para-aminobenzoic acid biosynthetic process 0
                penicillin biosynthetic process + 0
                pentalenolactone biosynthetic process 0
                phaseic acid biosynthetic process 0
                picolinic acid biosynthetic process 0
                pyochelin biosynthetic process 0
                pyruvate biosynthetic process + 6
                quinate biosynthetic process 0
                retinoic acid biosynthetic process + 11
                rhizobactin 1021 biosynthetic process 0
                salicylic acid biosynthetic process + 0
                shikimate biosynthetic process 0
                sinapate biosynthetic process 0
                tensidol B biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11641
      cellular metabolic process 10644
        organic acid metabolic process 1044
          oxoacid metabolic process 1017
            carboxylic acid metabolic process 973
              monocarboxylic acid metabolic process 637
                monocarboxylic acid biosynthetic process 189
                  (R)-mandelate catabolic process to benzoate 0
                  (R)-mevalonic acid biosynthetic process + 0
                  1-aminocyclopropane-1-carboxylate biosynthetic process 1
                  3,4-dihydroxybenzoate biosynthetic process 0
                  3-(2,3-dihydroxyphenyl)propanoate biosynthetic process 0
                  3-(3-hydroxyphenyl)propanoate biosynthetic process 0
                  4-hydroxyphenylacetate biosynthetic process 0
                  L-pipecolic acid biosynthetic process 0
                  abscisic acid biosynthetic process + 0
                  acetate biosynthetic process + 2
                  aldonic acid biosynthetic process + 0
                  asparagine biosynthetic process + 2
                  bile acid biosynthetic process + 19
                  biotin biosynthetic process 0
                  chrysobactin biosynthetic process 0
                  cinnamic acid biosynthetic process + 0
                  clavulanic acid biosynthetic process 0
                  coenzyme B biosynthetic process 0
                  creatine biosynthetic process 2
                  cspyrone B1 biosynthetic process 0
                  dermatan sulfate biosynthetic process 3
                  dethiobiotin biosynthetic process 0
                  ectoine biosynthetic process 0
                  endocrocin biosynthetic process + 0
                  fatty acid biosynthetic process + 139
                  ferulate biosynthetic process 0
                  formate biosynthetic process 0
                  galacturonate biosynthetic process + 0
                  gallate biosynthetic process 0
                  gamma-aminobutyric acid biosynthetic process 3
                  glucuronate biosynthetic process + 0
                  glycolate biosynthetic process + 1
                  glycyrrhetinate biosynthetic process 0
                  helvolic acid biosynthetic process + 0
                  indoleacetic acid biosynthetic process + 0
                  jasmonic acid biosynthetic process + 0
                  kynurenic acid biosynthetic process 2
                  lactate biosynthetic process + 5
                  mandelate biosynthetic process 0
                  methylgallate biosynthetic process 0
                  monensin A biosynthetic process 0
                  monodictyphenone biosynthetic process + 0
                  nicotinate biosynthetic process 0
                  o-orsellinic acid biosynthetic process + 0
                  olivetolic acid biosynthetic process 0
                  p-cumate biosynthetic process 0
                  pantothenate biosynthetic process 0
                  para-aminobenzoic acid biosynthetic process 0
                  penicillin biosynthetic process + 0
                  pentalenolactone biosynthetic process 0
                  phaseic acid biosynthetic process 0
                  picolinic acid biosynthetic process 0
                  pyochelin biosynthetic process 0
                  pyruvate biosynthetic process + 6
                  quinate biosynthetic process 0
                  retinoic acid biosynthetic process + 11
                  rhizobactin 1021 biosynthetic process 0
                  salicylic acid biosynthetic process + 0
                  shikimate biosynthetic process 0
                  sinapate biosynthetic process 0
                  tensidol B biosynthetic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.