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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine-containing compound catabolic process
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Accession:GO:0072529 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms:exact_synonym: pyrimidine and derivative catabolic process;   pyrimidine-containing compound breakdown;   pyrimidine-containing compound catabolism;   pyrimidine-containing compound degradation


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5-methylcytosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:13792537
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:1624291
RGD:13792537
G Tet3 tet methylcytosine dioxygenase 3 JBrowse link 4 115,060,702 115,160,800 RGD:13792537
cytidine deamination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:1624291
RGD:1600115
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1600115
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 JBrowse link 9 14,529,218 14,542,731 RGD:1600115
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 JBrowse link 7 121,108,108 121,128,346 RGD:1600115
G Cda cytidine deaminase JBrowse link 5 156,703,579 156,734,541 RGD:2316616
RGD:13792537
RGD:1624291
G Cdadc1 cytidine and dCMP deaminase domain containing 1 JBrowse link 15 39,865,094 39,894,122 RGD:1624291
RGD:1600115
G LOC100909857 cytidine deaminase-like JBrowse link 5 156,756,678 156,781,306 RGD:13792537
dCTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dctpp1 dCTP pyrophosphatase 1 JBrowse link 1 198,703,459 198,706,852 RGD:1624291
RGD:13792537
RGD:1600115
dTTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dctpp1 dCTP pyrophosphatase 1 JBrowse link 1 198,703,459 198,706,852 RGD:1624291
dUMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nt5m 5',3'-nucleotidase, mitochondrial JBrowse link 10 46,216,494 46,244,478 RGD:1624291
RGD:1600115
dUTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07001512.1 RGD:13792537
G Dut deoxyuridine triphosphatase JBrowse link 3 117,514,399 117,525,450 RGD:2300191
RGD:2301218
RGD:13792537
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nt5c 5', 3'-nucleotidase, cytosolic JBrowse link 10 104,052,807 104,054,805 RGD:1624291
RGD:1600115
pyrimidine nucleobase catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crmp1 collapsin response mediator protein 1 JBrowse link 14 78,266,931 78,312,777 RGD:13792537
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1599794
RGD:1624291
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624291
RGD:13792537
G Dpysl2 dihydropyrimidinase-like 2 JBrowse link 15 43,475,640 43,581,725 RGD:13792537
G Dpysl3 dihydropyrimidinase-like 3 JBrowse link 18 37,716,371 37,819,347 RGD:13792537
G Dpysl4 dihydropyrimidinase-like 4 JBrowse link 1 211,423,022 211,438,533 RGD:13792537
G Dpysl5 dihydropyrimidinase-like 5 JBrowse link 6 26,939,696 27,024,129 RGD:13792537
G LOC103692570 dihydropyrimidinase-related protein 5-like JBrowse link 6 26,423,841 26,446,080 RGD:13792537
pyrimidine nucleoside catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upb1 beta-ureidopropionase 1 JBrowse link 20 14,167,383 14,193,724 RGD:1600115
RGD:1624291
thymidine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1624291
RGD:1600115
thymine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 JBrowse link 6 108,146,552 108,167,185 RGD:1599052
RGD:13792537
RGD:1600115
RGD:1624291
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1624291
RGD:1600115
RGD:13792537
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624990
UDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 JBrowse link 15 51,222,954 51,250,787 RGD:1624291
RGD:1600115
uracil catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1600115
RGD:13792537
RGD:1624291
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624990
RGD:1624291
uridine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1624291
RGD:1600115

Term paths to the root
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Term Annotations click to browse term
  biological_process 19317
    metabolic process 11540
      nitrogen compound metabolic process 9888
        cellular nitrogen compound metabolic process 6323
          cellular nitrogen compound catabolic process 407
            pyrimidine-containing compound catabolic process 27
              5-methylcytosine catabolic process 3
              pyrimidine nucleobase catabolic process + 9
              pyrimidine nucleoside catabolic process + 10
              pyrimidine nucleotide catabolic process + 6
              thiamine diphosphate catabolic process 0
              thiamine-containing compound catabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.