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ONTOLOGY REPORT - ANNOTATIONS


Term:intracellular transport of virus
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Accession:GO:0075733 term browser browse the term
Definition:The directed movement of a virus, or part of a virus, within the host cell.
Synonyms:exact_synonym: egress of virus within host cell;   intracellular transport of viral material;   movement of virus within host cell;   viral genome transport in host cell
 related_synonym: intracellular virion transport;   viral egress
 alt_id: GO:0046788;   GO:0046795;   GO:0046796


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intracellular transport of virus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AAAS aladin WD repeat nucleoporin JBrowse link 12 53,307,456 53,321,610 RGD:2290271
G CD209 CD209 molecule JBrowse link 19 7,739,993 7,747,609 RGD:2290271
G CLEC4M C-type lectin domain family 4 member M JBrowse link 19 7,763,052 7,770,559 RGD:2290271
G KPNA1 karyopherin subunit alpha 1 JBrowse link 3 122,421,902 122,514,939 RGD:2290271
G KPNB1 karyopherin subunit beta 1 JBrowse link 17 47,649,919 47,685,505 RGD:2290271
G MVB12A multivesicular body subunit 12A JBrowse link 19 17,405,741 17,425,332 RGD:2290271
G MVB12B multivesicular body subunit 12B JBrowse link 9 126,326,829 126,507,040 RGD:2290271
G NDC1 NDC1 transmembrane nucleoporin JBrowse link 1 53,765,478 53,838,296 RGD:2290271
G NMT2 N-myristoyltransferase 2 JBrowse link 10 15,104,588 15,168,693 RGD:2290271
G NUP107 nucleoporin 107 JBrowse link 12 68,686,971 68,745,809 RGD:2290271
G NUP133 nucleoporin 133 JBrowse link 1 229,440,259 229,508,342 RGD:2290271
G NUP153 nucleoporin 153 JBrowse link 6 17,615,035 17,706,925 RGD:2290271
G NUP155 nucleoporin 155 JBrowse link 5 37,288,137 37,371,106 RGD:2290271
G NUP160 nucleoporin 160 JBrowse link 11 47,778,083 47,848,544 RGD:2290271
G NUP188 nucleoporin 188 JBrowse link 9 128,947,699 129,007,096 RGD:2290271
G NUP205 nucleoporin 205 JBrowse link 7 135,557,917 135,648,753 RGD:2290271
G NUP210 nucleoporin 210 JBrowse link 3 13,316,235 13,420,322 RGD:2290271
G NUP214 nucleoporin 214 JBrowse link 9 131,125,586 131,234,663 RGD:2290271
G NUP35 nucleoporin 35 JBrowse link 2 183,117,480 183,161,684 RGD:2290271
G NUP37 nucleoporin 37 JBrowse link 12 102,073,103 102,120,131 RGD:2290271
G NUP42 nucleoporin 42 JBrowse link 7 23,181,298 23,201,011 RGD:2290271
G NUP43 nucleoporin 43 JBrowse link 6 149,724,315 149,746,529 RGD:2290271
G NUP50 nucleoporin 50 JBrowse link 22 45,163,925 45,188,017 RGD:2290271
G NUP54 nucleoporin 54 JBrowse link 4 76,114,659 76,148,515 RGD:2290271
G NUP58 nucleoporin 58 JBrowse link 13 25,301,084 25,349,795 RGD:2290271
G NUP62 nucleoporin 62 JBrowse link 19 49,906,825 49,929,504 RGD:2290271
G NUP85 nucleoporin 85 JBrowse link 17 75,205,436 75,235,759 RGD:2290271
G NUP88 nucleoporin 88 JBrowse link 17 5,384,833 5,419,739 RGD:2290271
G NUP93 nucleoporin 93 JBrowse link 16 56,730,129 56,850,286 RGD:2290271
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 11 3,675,010 3,797,554 RGD:2290271
G POM121 POM121 transmembrane nucleoporin JBrowse link 7 72,879,335 72,951,459 RGD:2290271
G POM121C POM121 transmembrane nucleoporin C JBrowse link 7 75,416,786 75,486,299 RGD:2290271
G RAE1 ribonucleic acid export 1 JBrowse link 20 57,351,239 57,379,202 RGD:2290271
G RAN RAN, member RAS oncogene family JBrowse link 12 130,871,879 130,877,678 RGD:2290271
G RANBP2 RAN binding protein 2 JBrowse link 2 108,719,446 109,842,301 RGD:2290271
G RPS27A ribosomal protein S27a JBrowse link 2 55,231,903 55,235,853 RGD:2290271
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 3 10,300,929 10,321,188 RGD:2290271
G SEH1L SEH1 like nucleoporin JBrowse link 18 12,947,984 12,987,665 RGD:2290271
G TPR translocated promoter region, nuclear basket protein JBrowse link 1 186,311,652 186,375,253 RGD:2290271
G TSG101 tumor susceptibility 101 JBrowse link 11 18,480,311 18,526,942 RGD:2290271
G UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link 19 18,563,766 18,577,550 RGD:2290271
G UBAP1 ubiquitin associated protein 1 JBrowse link 9 34,179,005 34,252,523 RGD:2290271
G UBB ubiquitin B JBrowse link 17 16,380,793 16,382,745 RGD:2290271
G UBC ubiquitin C JBrowse link 12 124,911,646 124,914,650 RGD:2290271
G VPS28 VPS28 subunit of ESCRT-I JBrowse link 8 144,423,601 144,428,563 RGD:2290271
G VPS37A VPS37A subunit of ESCRT-I JBrowse link 8 17,246,892 17,333,455 RGD:2290271
G VPS37B VPS37B subunit of ESCRT-I JBrowse link 12 122,865,330 122,896,143 RGD:2290271
G VPS37C VPS37C subunit of ESCRT-I JBrowse link 11 61,130,257 61,161,426 RGD:2290271
G VPS37D VPS37D subunit of ESCRT-I JBrowse link 7 73,665,346 73,672,110 RGD:2290271
G XPO1 exportin 1 JBrowse link 2 61,477,849 61,538,522 RGD:2290271
entry of viral genome into host nucleus through nuclear pore complex via importin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KPNA2 karyopherin subunit alpha 2 JBrowse link 17 68,035,735 68,046,859 RGD:2290271
G KPNA6 karyopherin subunit alpha 6 JBrowse link 1 32,108,043 32,176,563 RGD:2290271
microtubule-dependent intracellular transport of viral material towards nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DYNLT1 dynein light chain Tctex-type 1 JBrowse link 6 158,636,474 158,644,743 RGD:2290271
negative regulation of intracellular transport of viral material term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BST2 bone marrow stromal cell antigen 2 JBrowse link 19 17,402,939 17,405,630 RGD:2290271
G TRIM15 tripartite motif containing 15 JBrowse link 6 30,163,546 30,172,693 RGD:2290271
positive regulation of intracellular transport of viral material term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FMR1 FMRP translational regulator 1 JBrowse link X 147,911,919 147,951,127 RGD:2290271
viral penetration into host nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KPNA3 karyopherin subunit alpha 3 JBrowse link 13 49,699,307 49,792,682 RGD:2290271
G NUP153 nucleoporin 153 JBrowse link 6 17,615,035 17,706,925 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17988
    localization 6841
      multi-organism localization 62
        multi-organism transport 62
          transport of virus 60
            intracellular transport of virus 57
              actin-dependent intracellular transport of virus + 0
              exit of virus from host cell nucleus + 0
              microtubule-dependent intracellular transport of viral material + 1
              negative regulation of intracellular transport of viral material 2
              positive regulation of intracellular transport of viral material 1
              regulation of intracellular transport of viral material + 3
              transport of viral material towards nucleus + 1
              viral penetration into host nucleus + 4
Path 2
Term Annotations click to browse term
  biological_process 17988
    multi-organism process 3177
      interspecies interaction between organisms 1059
        symbiotic process 983
          viral process 917
            viral life cycle 330
              intracellular transport of virus 57
                actin-dependent intracellular transport of virus + 0
                exit of virus from host cell nucleus + 0
                microtubule-dependent intracellular transport of viral material + 1
                negative regulation of intracellular transport of viral material 2
                positive regulation of intracellular transport of viral material 1
                regulation of intracellular transport of viral material + 3
                transport of viral material towards nucleus + 1
                viral penetration into host nucleus + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.