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ONTOLOGY REPORT - ANNOTATIONS


Term:lytic vacuole organization
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Accession:GO:0080171 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lytic vacuole.
Synonyms:exact_synonym: lytic vacuole organisation
 narrow_synonym: lytic vacuolar assembly
 related_synonym: lytic vacuole biogenesis;   lytic vacuole organization and biogenesis


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lysosomal lumen acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase, H+ transporting, lysosomal accessory protein 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:12,587,759...12,617,051
Ensembl chr  X:12,587,801...12,617,049
JBrowse link
G Atp6v0c ATPase, H+ transporting, lysosomal V0 subunit C TAS (MGI:MGI:2149889|PMID:11441017) MGI PMID:11441017 MGI:MGI:2149889 NCBI chr17:24,163,865...24,169,678
Ensembl chr17:24,163,866...24,169,702
JBrowse link
G Ccdc115 coiled-coil domain containing 115 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:34,436,670...34,439,672
Ensembl chr 1:34,436,670...34,439,672
JBrowse link
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 7:126,571,207...126,585,817
Ensembl chr 7:126,571,207...126,585,817
JBrowse link
G Cln5 ceroid-lipofuscinosis, neuronal 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:103,070,216...103,077,630
Ensembl chr14:103,070,216...103,077,628
JBrowse link
G Cln6 ceroid-lipofuscinosis, neuronal 6 ISS
ISO
(MGI:MGI:2157193|PMID:11727201) UniProtKB
MGI
PMID:11727201 GO_REF:0000096, MGI:MGI:2157193, MGI:MGI:4834177 NCBI chr 9:62,838,785...62,852,006
Ensembl chr 9:62,838,785...62,852,006
JBrowse link
G Grn granulin ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:102,430,507...102,436,809
Ensembl chr11:102,430,315...102,437,048
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:122,836,077...122,859,175
Ensembl chr 4:122,836,242...122,859,175
JBrowse link
G Snapin SNAP-associated protein IMP (MGI:MGI:4879078|PMID:20920792) MGI PMID:20920792 MGI:MGI:4879078 NCBI chr 3:90,488,026...90,491,013
Ensembl chr 3:90,488,026...90,491,033
JBrowse link
G Tmem199 transmembrane protein 199 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:78,507,055...78,512,168
Ensembl chr11:78,507,055...78,512,172
JBrowse link
G Tmem9 transmembrane protein 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:136,008,219...136,035,030
Ensembl chr 1:136,008,150...136,035,342
JBrowse link
lysosomal lumen pH elevation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:126,571,207...126,585,817
Ensembl chr 7:126,571,207...126,585,817
JBrowse link
lysosomal membrane organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr11:59,211,412...59,228,267
Ensembl chr11:59,211,412...59,228,270
JBrowse link
lysosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP-binding cassette, sub-family A (ABC1), member 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:53,030,789...53,159,988
Ensembl chr 4:53,030,787...53,159,895
JBrowse link
G Acp2 acid phosphatase 2, lysosomal IMP
IBA
(MGI:MGI:894905|PMID:9228031)
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:3522374|PMID:15604265)
MGI
GO_Central
PMID:9228031, PMID:15604265, PMID:21873635 MGI:MGI:3522374, MGI:MGI:6201960, MGI:MGI:894905 NCBI chr 2:91,202,812...91,214,098
Ensembl chr 2:91,202,885...91,214,098
JBrowse link
G Acp4 acid phosphatase 4 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 7:44,252,003...44,261,390
Ensembl chr 7:44,252,148...44,257,378
JBrowse link
G Acpp acid phosphatase, prostate IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 9:104,288,240...104,337,722
Ensembl chr 9:104,288,251...104,337,748
JBrowse link
G Aktip thymoma viral proto-oncogene 1 interacting protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:91,111,781...91,135,494
Ensembl chr 8:91,111,784...91,199,976
JBrowse link
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit IMP (MGI:MGI:1330543|PMID:9931340), (MGI:MGI:6415001|PMID:30786955) MGI PMID:9931340, PMID:30786955 MGI:MGI:1330543, MGI:MGI:6415001 NCBI chr13:94,358,960...94,566,316
Ensembl chr13:94,358,960...94,566,317
JBrowse link
G Becn1 beclin 1, autophagy related IMP (MGI:MGI:3801567|PMID:18497889) MGI PMID:18497889 MGI:MGI:3801567 NCBI chr11:101,288,258...101,302,286
Ensembl chr11:101,285,952...101,302,286
JBrowse link
G Chmp5 charged multivesicular body protein 5 IMP (MGI:MGI:3622513|PMID:16567502) MGI PMID:16567502 MGI:MGI:3622513 NCBI chr 4:40,948,553...40,965,302
Ensembl chr 4:40,948,407...40,965,303
JBrowse link
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) IMP
IBA
(MGI:MGI:1343910|PMID:10440905)
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:1337525|PMID:10191119), (MGI:MGI:1346962|PMID:10527801)
(MGI:MGI:3527911|PMID:15588329)
MGI
GO_Central
PMID:10191119, PMID:10440905, PMID:10527801, PMID:15588329, PMID:21873635 MGI:MGI:1337525, MGI:MGI:1343910, MGI:MGI:1346962, MGI:MGI:3527911, MGI:MGI:6201960 NCBI chr 7:126,571,207...126,585,817
Ensembl chr 7:126,571,207...126,585,817
JBrowse link
G Cln5 ceroid-lipofuscinosis, neuronal 5 IMP
IBA
(MGI:MGI:3512689|PMID:15459177)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15459177, PMID:21873635 MGI:MGI:3512689, MGI:MGI:6201960 NCBI chr14:103,070,216...103,077,630
Ensembl chr14:103,070,216...103,077,628
JBrowse link
G Cln6 ceroid-lipofuscinosis, neuronal 6 IMP
IBA
(MGI:MGI:1203267|PMID:9600738), (MGI:MGI:5751614|PMID:26681805)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:9600738, PMID:21873635, PMID:26681805 MGI:MGI:1203267, MGI:MGI:5751614, MGI:MGI:6201960 NCBI chr 9:62,838,785...62,852,006
Ensembl chr 9:62,838,785...62,852,006
JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein IMP (MGI:MGI:1333651|PMID:10087069), (MGI:MGI:65559|PMID:8144516), (MGI:MGI:66707|PMID:8160780), (MGI:MGI:71226|PMID:7613514) MGI PMID:7613514, PMID:8144516, PMID:8160780, PMID:10087069 MGI:MGI:1333651, MGI:MGI:65559, MGI:MGI:66707, MGI:MGI:71226 NCBI chr 8:14,881,335...14,901,720
Ensembl chr 8:14,881,335...14,901,720
JBrowse link
G Clvs1 clavesin 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) RGD
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:6201960 NCBI chr 4:9,144,745...9,451,691
Ensembl chr 4:9,269,293...9,451,691
JBrowse link
G Clvs2 clavesin 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:33,512,286...33,624,684
Ensembl chr10:33,512,286...33,624,769
JBrowse link
G Fam160a2 family with sequence similarity 160, member A2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:105,371,211...105,400,142
Ensembl chr 7:105,371,211...105,400,054
JBrowse link
G Gaa glucosidase, alpha, acid ISO
IMP
(MGI:MGI:1195358|PMID:9384603), (MGI:MGI:1346721|PMID:10547605), (MGI:MGI:2136118|PMID:11328962), (MGI:MGI:3664400|PMID:12115977)
(MGI:MGI:1275872|PMID:9668092), (MGI:MGI:3618942|PMID:15169761)
MGI PMID:9384603, PMID:9668092, PMID:10547605, PMID:11328962, PMID:12115977, PMID:15169761 GO_REF:0000096, MGI:MGI:1195358, MGI:MGI:1275872, MGI:MGI:1346721, MGI:MGI:2136118, MGI:MGI:3618942, MGI:MGI:3664400, MGI:MGI:4834177 NCBI chr11:119,267,963...119,285,458
Ensembl chr11:119,267,887...119,285,454
JBrowse link
G Gba glucosidase, beta, acid IMP
ISO
(MGI:MGI:5817293|PMID:27378698) UniProt
MGI
PMID:27378698 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5817293 NCBI chr 3:89,202,905...89,208,873
Ensembl chr 3:89,202,928...89,208,966
JBrowse link
G Gnptab N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:88,379,134...88,447,324
Ensembl chr10:88,379,132...88,447,329
JBrowse link
G Grn granulin IMP (MGI:MGI:6274951|PMID:27789271) UniProt PMID:27789271 MGI:MGI:6274951 NCBI chr11:102,430,507...102,436,809
Ensembl chr11:102,430,315...102,437,048
JBrowse link
G Hexa hexosaminidase A IMP
IGI
(MGI:MGI:77946|PMID:8747922)
(MGI:MGI:1097747|PMID:9302266), (MGI:MGI:1271008|PMID:9645704), (MGI:MGI:1352198|PMID:10591619), (MGI:MGI:3033296|PMID:14972652)
(MGI:MGI:83770|PMID:8896570), (MGI:MGI:894634|PMID:9184660)
(MGI:MGI:69059|PMID:7937929), (MGI:MGI:86923|PMID:9103204)
MGI PMID:7937929, PMID:8747922, PMID:8896570, PMID:9103204, PMID:9184660, PMID:9302266, PMID:9645704, PMID:10591619, PMID:14972652 MGI:MGI:1097747, MGI:MGI:1271008, MGI:MGI:1352198, MGI:MGI:3033296, MGI:MGI:69059, MGI:MGI:77946, MGI:MGI:83770, MGI:MGI:86923, MGI:MGI:894634 NCBI chr 9:59,539,540...59,565,109
Ensembl chr 9:59,539,540...59,565,109
JBrowse link
G Hexb hexosaminidase B IMP
IGI
(MGI:MGI:1271008|PMID:9645704), (MGI:MGI:78473|PMID:8789434)
(MGI:MGI:83770|PMID:8896570), (MGI:MGI:894634|PMID:9184660)
MGI PMID:8789434, PMID:8896570, PMID:9184660, PMID:9645704 MGI:MGI:1271008, MGI:MGI:78473, MGI:MGI:83770, MGI:MGI:894634 NCBI chr13:97,176,331...97,198,357
Ensembl chr13:97,176,331...97,198,357
JBrowse link
G Hook1 hook microtubule tethering protein 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:95,967,181...96,025,412
Ensembl chr 4:95,967,240...96,025,413
JBrowse link
G Hook2 hook microtubule tethering protein 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:84,988,776...85,003,352
Ensembl chr 8:84,990,603...85,003,349
JBrowse link
G Hook3 hook microtubule tethering protein 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:26,021,421...26,119,618
Ensembl chr 8:26,021,421...26,119,224
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 IMP (MGI:MGI:6415001|PMID:30786955) MGI PMID:30786955 MGI:MGI:6415001 NCBI chr19:42,755,190...42,780,015
Ensembl chr19:42,755,105...42,779,978
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 ISS
ISO
(MGI:MGI:3687925|PMID:12663659) UniProtKB
MGI
PMID:12663659 GO_REF:0000096, MGI:MGI:3687925, MGI:MGI:4834177 NCBI chr 5:112,342,983...112,378,424
Ensembl chr 5:112,343,083...112,378,414
JBrowse link
G Idua iduronidase, alpha-L IMP (MGI:MGI:86916|PMID:9097952)
(MGI:MGI:4414887|PMID:19751987)
MGI PMID:9097952, PMID:19751987 MGI:MGI:4414887, MGI:MGI:86916 NCBI chr 5:108,660,331...108,685,446
Ensembl chr 5:108,660,331...108,684,557
JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 IMP (MGI:MGI:4887551|PMID:19177150) UniProtKB PMID:19177150 MGI:MGI:4887551 NCBI chr 7:101,905,837...101,911,903
Ensembl chr 7:101,905,904...101,926,675
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Lyst lysosomal trafficking regulator IMP (MGI:MGI:1099544|PMID:9368050)
(MGI:MGI:53816|PMID:4697831), (MGI:MGI:53992|PMID:1113502), (MGI:MGI:55104|PMID:6170520), (MGI:MGI:56449|PMID:4031470)
MGI PMID:1113502, PMID:4031470, PMID:4697831, PMID:6170520, PMID:9368050 MGI:MGI:1099544, MGI:MGI:53816, MGI:MGI:53992, MGI:MGI:55104, MGI:MGI:56449 NCBI chr13:13,590,311...13,778,803
Ensembl chr13:13,590,397...13,778,803
JBrowse link
G Mbtps1 membrane-bound transcription factor peptidase, site 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:119,508,151...119,558,864
Ensembl chr 8:119,508,156...119,558,735
JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 IMP (MGI:MGI:5575728|PMID:24423645)
(MGI:MGI:5751614|PMID:26681805)
MGI PMID:24423645, PMID:26681805 MGI:MGI:5575728, MGI:MGI:5751614 NCBI chr 3:40,818,065...40,846,880
Ensembl chr 3:40,818,103...40,846,886
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
G Myo7a myosin VIIA ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:98,051,054...98,119,522
Ensembl chr 7:98,051,060...98,119,524
JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) IMP (MGI:MGI:3769195|PMID:17712420) MGI PMID:17712420 MGI:MGI:3769195 NCBI chr11:101,070,090...101,077,672
Ensembl chr11:101,070,012...101,077,672
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 IMP (MGI:MGI:3612221|PMID:16368712)
(MGI:MGI:3654230|PMID:16542649)
MGI PMID:16368712, PMID:16542649 MGI:MGI:3612221, MGI:MGI:3654230 NCBI chr 4:122,836,077...122,859,175
Ensembl chr 4:122,836,242...122,859,175
JBrowse link
G Snapin SNAP-associated protein IMP
IBA
(MGI:MGI:4879078|PMID:20920792)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:20920792, PMID:21873635 MGI:MGI:4879078, MGI:MGI:6201960 NCBI chr 3:90,488,026...90,491,013
Ensembl chr 3:90,488,026...90,491,033
JBrowse link
G Spg11 SPG11, spatacsin vesicle trafficking associated IMP (MGI:MGI:5749311|PMID:26284655) MGI PMID:26284655 MGI:MGI:5749311 NCBI chr 2:122,053,526...122,119,434
Ensembl chr 2:122,053,520...122,118,386
JBrowse link
G Tfeb transcription factor EB ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:47,737,037...47,792,416
Ensembl chr17:47,737,030...47,792,419
JBrowse link
G Tmem106b transmembrane protein 106B IMP
IBA
(MGI:MGI:5588048|PMID:25066864)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:25066864 MGI:MGI:5588048, MGI:MGI:6201960 NCBI chr 6:13,069,759...13,089,269
Ensembl chr 6:13,069,759...13,089,269
JBrowse link
G Tpcn2 two pore segment channel 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:145,181,633...145,284,011
Ensembl chr 7:145,186,524...145,284,011
JBrowse link
G Tpp1 tripeptidyl peptidase I IMP (MGI:MGI:3522013|PMID:15483130) MGI PMID:15483130 MGI:MGI:3522013 NCBI chr 7:105,744,811...105,752,282
Ensembl chr 7:105,744,811...105,752,235
JBrowse link
G Vps18 VPS18 CORVET/HOPS core subunit ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 2:119,288,742...119,298,453
Ensembl chr 2:119,288,740...119,298,453
JBrowse link
G Vps35 VPS35 retromer complex component IMP (MGI:MGI:5694519|PMID:26203154) ParkinsonsUK-UCL PMID:26203154 MGI:MGI:5694519 NCBI chr 8:85,260,385...85,299,517
Ensembl chr 8:85,260,392...85,299,802
JBrowse link
G Washc5 WASH complex subunit 5 IMP
ISO
(MGI:MGI:6199426|PMID:30061306) MGI PMID:30061306 MGI:MGI:6199426 NCBI chr15:59,331,863...59,374,194
Ensembl chr15:59,331,997...59,374,167
JBrowse link
G Zkscan3 zinc finger with KRAB and SCAN domains 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,387,004...21,402,755
Ensembl chr13:21,387,003...21,402,755
JBrowse link
negative regulation of lysosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1, autophagy related ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr11:101,288,258...101,302,286
Ensembl chr11:101,285,952...101,302,286
JBrowse link
phagolysosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin, actin binding protein 1A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:126,699,774...126,704,816
Ensembl chr 7:126,699,773...126,707,787
JBrowse link
G Myo7a myosin VIIA IMP (MGI:MGI:2662763|PMID:12743369) MGI PMID:12743369 MGI:MGI:2662763 NCBI chr 7:98,051,054...98,119,522
Ensembl chr 7:98,051,060...98,119,524
JBrowse link
G P2rx7 purinergic receptor P2X, ligand-gated ion channel, 7 IMP (MGI:MGI:3699774|PMID:11544318) MGI PMID:11544318 MGI:MGI:3699774 NCBI chr 5:122,643,927...122,692,336
Ensembl chr 5:122,643,911...122,691,432
JBrowse link
G Srpx sushi-repeat-containing protein IMP (MGI:MGI:3852261|PMID:19368996) MGI PMID:19368996 MGI:MGI:3852261 NCBI chr  X:10,037,977...10,117,640
Ensembl chr  X:10,037,977...10,117,709
JBrowse link
phagolysosome assembly involved in apoptotic cell clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab14 RAB14, member RAS oncogene family IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:35,180,205...35,201,120
Ensembl chr 2:35,180,205...35,201,120
JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) IMP (MGI:MGI:5698740|PMID:26450516) UniProt PMID:26450516 MGI:MGI:5698740 NCBI chr 7:126,571,207...126,585,817
Ensembl chr 7:126,571,207...126,585,817
JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) IMP (MGI:MGI:5698740|PMID:26450516) UniProt PMID:26450516 MGI:MGI:5698740 NCBI chr 7:126,571,207...126,585,817
Ensembl chr 7:126,571,207...126,585,817
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing ISO
IDA
(MGI:MGI:6103777|PMID:28779020) MGI
UniProt
PMID:28779020 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6103777 NCBI chr 1:65,186,640...65,278,696
Ensembl chr 1:65,186,683...65,278,695
JBrowse link
G Pla2g5 phospholipase A2, group V IMP (MGI:MGI:3841317|PMID:19342668) UniProt PMID:19342668 MGI:MGI:3841317 NCBI chr 4:138,799,247...138,863,562
Ensembl chr 4:138,799,244...138,863,482
JBrowse link
G Rab20 RAB20, member RAS oncogene family ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:11,453,390...11,478,640
Ensembl chr 8:11,453,518...11,478,710
JBrowse link
G Rab34 RAB34, member RAS oncogene family IMP
IBA
ISO
(MGI:MGI:5467668|PMID:23197834)
(MGI:MGI:6201960|PMID:21873635)
ParkinsonsUK-UCL
GO_Central
MGI
PMID:21873635, PMID:23197834 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5467668, MGI:MGI:6201960 NCBI chr11:78,188,427...78,192,193
Ensembl chr11:78,188,430...78,192,193
JBrowse link
G Rab39 RAB39, member RAS oncogene family ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:53,684,110...53,706,232
Ensembl chr 9:53,684,110...53,706,232
JBrowse link
G Rab7 RAB7, member RAS oncogene family ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 6:87,999,106...88,045,270
Ensembl chr 6:87,999,106...88,045,270
JBrowse link
G Rab7b RAB7B, member RAS oncogene family IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 1:131,688,681...131,715,443
Ensembl chr 1:131,688,695...131,715,439
JBrowse link
G Syt7 synaptotagmin VII IMP (MGI:MGI:3690533|PMID:16982801) UniProtKB PMID:16982801 MGI:MGI:3690533 NCBI chr19:10,388,802...10,453,181
Ensembl chr19:10,389,090...10,453,180
JBrowse link
G Tmem175 transmembrane protein 175 IMP (MGI:MGI:5693670|PMID:26317472) UniProtKB PMID:26317472 MGI:MGI:5693670 NCBI chr 5:108,629,779...108,647,770
Ensembl chr 5:108,629,770...108,648,782
JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11, spatacsin vesicle trafficking associated IMP (MGI:MGI:5749311|PMID:26284655) MGI PMID:26284655 MGI:MGI:5749311 NCBI chr 2:122,053,526...122,119,434
Ensembl chr 2:122,053,520...122,118,386
JBrowse link
positive regulation of lysosomal membrane permeability term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein 8 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 9:40,801,276...40,805,202
Ensembl chr 9:40,800,984...40,810,087
JBrowse link
G Mt3 metallothionein 3 IMP (MGI:MGI:4881636|PMID:20544854) UniProtKB PMID:20544854 MGI:MGI:4881636 NCBI chr 8:94,152,607...94,154,148
Ensembl chr 8:94,152,607...94,154,146
JBrowse link
positive regulation of lysosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin IDA
ISO
(MGI:MGI:5905514|PMID:28073925) UniProt
MGI
PMID:28073925 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5905514 NCBI chr11:102,430,507...102,436,809
Ensembl chr11:102,430,315...102,437,048
JBrowse link
regulation of lysosomal lumen pH term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gm6377 predicted gene 6377 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:109,196,756...109,200,445
Ensembl chr  X:109,196,756...109,200,439
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Tasl TLR adaptor interacting with endolysosomal SLC15A4 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr  X:85,776,968...85,891,499
Ensembl chr  X:85,870,354...85,891,499
JBrowse link
G Tmem165 transmembrane protein 165 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:76,183,880...76,209,244
Ensembl chr 5:76,183,880...76,209,245
JBrowse link
G Tmem175 transmembrane protein 175 IMP (MGI:MGI:5693670|PMID:26317472) UniProtKB PMID:26317472 MGI:MGI:5693670 NCBI chr 5:108,629,779...108,647,770
Ensembl chr 5:108,629,770...108,648,782
JBrowse link
G Vps33a VPS33A CORVET/HOPS core subunit ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:123,528,757...123,573,043
Ensembl chr 5:123,528,659...123,573,038
JBrowse link
regulation of lysosomal membrane permeability term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal-associated protein transmembrane 4B ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:34,238,026...34,284,295
Ensembl chr15:34,238,028...34,284,302
JBrowse link
regulation of lysosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal-associated protein transmembrane 4B ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:34,238,026...34,284,295
Ensembl chr15:34,238,028...34,284,302
JBrowse link
G Trex1 three prime repair exonuclease 1 IMP (MGI:MGI:5460923|PMID:23160154) MGI PMID:23160154 MGI:MGI:5460923 NCBI chr 9:109,057,932...109,059,723
Ensembl chr 9:109,057,933...109,059,734
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23369
    cellular process 17359
      cellular component organization or biogenesis 6385
        cellular component organization 6197
          organelle organization 3829
            vacuole organization 177
              lytic vacuole organization 73
                lysosome organization + 73
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.