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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


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extracellular matrix assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain ISO MGI:MGI:1856327 (MGI:MGI:5468210|PMID:22910579) RGD PMID:22910579 MGI:MGI:5468210 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 ISO (MGI:MGI:6094666|PMID:28774593) RGD PMID:28774593 MGI:MGI:6094666 NCBI chr10:88,326,337...88,338,199
Ensembl chr10:88,326,080...88,338,207
JBrowse link
G Gas6 growth arrest specific 6 IEP PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Gpm6b glycoprotein m6b IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21638316)
Ensembl
UniProt
RGD
PMID:21638316 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:29,604,607...29,751,174
Ensembl chr  X:29,607,075...29,648,403
JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 ISO
IEA
MGI:MGI:4437572 (MGI:MGI:4437139|PMID:20181608)
GO_REF:0000107
RGD
Ensembl
PMID:20181608 GO_REF:0000107, MGI:MGI:4437139 NCBI chr 2:187,395,104...187,402,076
Ensembl chr 2:187,396,349...187,401,786
JBrowse link
G Has1 hyaluronan synthase 1 ISO
IBA
(MGI:MGI:5508296|PMID:10455188)
PMID:21873635
RGD PMID:10455188, PMID:21873635 MGI:MGI:5508296, RGD:13792537 NCBI chr 1:59,720,612...59,732,409
Ensembl chr 1:59,720,612...59,732,409
JBrowse link
G Has2 hyaluronan synthase 2 ISO
IBA
ISS
(MGI:MGI:5508296|PMID:10455188)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10455188, PMID:21873635 GO_REF:0000024, MGI:MGI:5508296, RGD:13792537 NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
JBrowse link
G Has3 hyaluronan synthase 3 ISO
IBA
(MGI:MGI:5508296|PMID:10455188)
PMID:21873635
RGD PMID:10455188, PMID:21873635 MGI:MGI:5508296, RGD:13792537 NCBI chr19:39,063,298...39,077,745
Ensembl chr19:39,063,998...39,077,722
JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 ISO (PMID:23867277) RGD PMID:23867277 NCBI chr13:73,423,396...73,460,890
Ensembl chr13:73,423,397...73,460,935
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO
IEA
MGI:MGI:1856877 (MGI:MGI:5468210|PMID:22910579)
GO_REF:0000107
RGD
Ensembl
PMID:22910579 GO_REF:0000107, MGI:MGI:5468210 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO
ISS
(PMID:19734317)
GO_REF:0000024
(MGI:MGI:4820704|PMID:19734317)
RGD
UniProt
PMID:19734317 GO_REF:0000024, MGI:MGI:4820704 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
basement membrane assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079
JBrowse link
G Lamb2 laminin subunit beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
JBrowse link
G Lamb3 laminin subunit beta 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:112,031,614...112,073,187
Ensembl chr13:112,031,594...112,073,186
JBrowse link
G Ntn4 netrin 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:34,533,543...34,649,330
Ensembl chr 7:34,533,543...34,649,481
JBrowse link
G Ntng1 netrin G1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:212,695,464...213,073,046
Ensembl chr 2:212,696,624...212,852,870
JBrowse link
G Ntng2 netrin G2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,742,511...7,800,834
Ensembl chr 3:7,742,531...7,796,385
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO MGI:MGI:3620600|MGI:MGI:3620601|MGI:MGI:3620603 (MGI:MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:MGI:3618677 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Ramp2 receptor activity modifying protein 2 ISO
ISS
(MGI:MGI:3772552|PMID:18097473)
GO_REF:0000024
RGD
UniProt
PMID:18097473 GO_REF:0000024, MGI:MGI:3772552 NCBI chr10:89,166,170...89,168,962
Ensembl chr10:89,166,890...89,168,965
JBrowse link
elastic fiber assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha ISO MGI:MGI:1856097|MGI:MGI:3588774 (MGI:MGI:3616522|PMID:16338116), (MGI:MGI:54141|PMID:937819), (MGI:MGI:54357|PMID:20889), (MGI:MGI:63907|PMID:3385878) RGD PMID:20889, PMID:937819, PMID:3385878, PMID:16338116 MGI:MGI:3616522, MGI:MGI:54141, MGI:MGI:54357, MGI:MGI:63907 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 ISO MGI:MGI:4410301 (MGI:MGI:4397710|PMID:19855011) RGD PMID:19855011 MGI:MGI:4397710 NCBI chr 1:220,853,695...220,861,420
Ensembl chr 1:220,854,403...220,861,420
JBrowse link
G Eln elastin TAS RGD PMID:10090127 RGD:731206 NCBI chr12:24,978,478...25,021,864
Ensembl chr12:24,978,483...25,021,863
JBrowse link
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:MGI:5605894 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
G Fbln5 fibulin 5 ISO
IBA
ISS
(PMID:17035250)
PMID:21873635
(MGI:MGI:2681470|PMID:11805835), (MGI:MGI:2681471|PMID:11805834)
GO_REF:0000024
RGD
UniProt
PMID:11805834, PMID:11805835, PMID:17035250, PMID:21873635 GO_REF:0000024, MGI:MGI:2681470, MGI:MGI:2681471, RGD:13792537 NCBI chr 6:125,644,797...125,723,957
Ensembl chr 6:125,644,804...125,723,944
JBrowse link
G LOC102553715 microfibril-associated glycoprotein 4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:49,000,914...49,003,935
Ensembl chr10:49,000,973...49,003,931
JBrowse link
G Lox lysyl oxidase IMP
ISO
MGI:MGI:3610732 (MGI:MGI:3604822|PMID:16192629), (MGI:MGI:3609311|PMID:12417550), (MGI:MGI:5616293|PMID:23413430) RGD PMID:12417550, PMID:16192629, PMID:23413430, PMID:16432278 MGI:MGI:3604822, MGI:MGI:3609311, MGI:MGI:5616293, RGD:1600669 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
JBrowse link
G Mfap4 microfibril associated protein 4 ISO
IBA
(PMID:22355679)
PMID:21873635
RGD PMID:22355679, PMID:21873635 RGD:13792537 NCBI chr10:47,765,463...47,768,484
Ensembl chr10:47,765,432...47,768,483
JBrowse link
G Myh11 myosin heavy chain 11 IEA
ISO
GO_REF:0000107
(PMID:16444274)
Ensembl
RGD
PMID:16444274 GO_REF:0000107 NCBI chr10:764,421...859,184
Ensembl chr10:764,421...859,184
JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 ISO (MGI:MGI:4453293|PMID:19940141) RGD PMID:19940141 MGI:MGI:4453293 NCBI chr 8:64,811,940...65,413,498
Ensembl chr 8:64,817,191...65,003,296
JBrowse link
G Tnxb tenascin XB ISO (PMID:15102077) RGD PMID:15102077
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 ISO
IEA
MGI:MGI:5754386 (MGI:MGI:5662198|PMID:25572963)
GO_REF:0000107
RGD
Ensembl
PMID:25572963 GO_REF:0000107, MGI:MGI:5662198 NCBI chr 4:118,946,267...119,131,202
Ensembl chr 4:118,946,268...119,131,202
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO UniProtKB:Q86SQ0|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 IEA
ISO
GO_REF:0000107
UniProtKB:Q7Z460|UniProtKB:Q86SQ0 (PMID:23940118)
Ensembl
RGD
PMID:23940118 GO_REF:0000107 NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 ISO UniProtKB:Q7Z460|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:MGI:5605894 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
G Rgcc regulator of cell cycle ISO (PMID:21307346) RGD PMID:21307346 NCBI chr15:61,551,861...61,564,695
Ensembl chr15:61,551,861...61,564,695
JBrowse link
G Smad3 SMAD family member 3 ISO (PMID:21307346) RGD PMID:21307346 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO MGI:MGI:2176205|MGI:MGI:2385468 (MGI:MGI:4848001|PMID:20881014) RGD PMID:20881014 MGI:MGI:4848001 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO UniProtKB:P00797 (PMID:17416596) RGD PMID:17416596 NCBI chr19:57,321,594...57,333,460
Ensembl chr19:57,321,640...57,333,433
JBrowse link
G Has2 hyaluronan synthase 2 IMP RGD PMID:27094859 RGD:12910548 NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:5298073|PMID:21311046) RGD PMID:21311046 MGI:MGI:5298073 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3766861|PMID:17881493) RGD PMID:17881493 MGI:MGI:3766861 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    cellular process 18800
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          cellular component assembly 2983
            extracellular matrix assembly 43
              basement membrane assembly + 13
              biofilm matrix assembly 0
              elastic fiber assembly 12
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 9
              regulation of extracellular matrix assembly + 13
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 20028
    cellular process 18800
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          extracellular structure organization 316
            extracellular matrix organization 315
              extracellular matrix assembly 43
                basement membrane assembly + 13
                biofilm matrix assembly 0
                elastic fiber assembly 12
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 9
                regulation of extracellular matrix assembly + 13
                vitelline membrane formation + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.