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ONTOLOGY REPORT - ANNOTATIONS


Term:cardiac muscle cell contraction
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Accession:GO:0086003 term browser browse the term
Definition:The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a cardiac muscle cell.


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cardiac muscle cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Camk2d calcium/calmodulin dependent protein kinase II delta JBrowse link NW_004955428 25,583,501 25,880,395 RGD:9068941
G Sgcd sarcoglycan delta JBrowse link NW_004955408 10,273,344 10,820,108 RGD:9068941
G Slc9a1 solute carrier family 9 member A1 JBrowse link NW_004955452 6,409,833 6,467,841 RGD:9068941
atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank2 ankyrin 2 JBrowse link NW_004955457 13,624,590 13,938,427 RGD:9068941
G Kcna5 potassium voltage-gated channel subfamily A member 5 JBrowse link NW_004955413 2,835,730 2,838,761 RGD:9068941
G Kcne5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link NW_004955490 6,242,197 6,243,627 RGD:9068941
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link NW_004955422 14,212,563 14,544,556 RGD:9068941
G Nup155 nucleoporin 155 JBrowse link NW_004955426 21,997,208 22,057,205 RGD:9068941
G Scn3b sodium voltage-gated channel beta subunit 3 JBrowse link NW_004955412 24,391,764 24,412,912 RGD:9068941
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link NW_004955427 25,295,517 25,371,419 RGD:9068941
cardiac muscle cell action potential involved in contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1c calcium voltage-gated channel subunit alpha1 C JBrowse link NW_004955454 4,573,647 5,199,046 RGD:9068941
G Cacna1d calcium voltage-gated channel subunit alpha1 D JBrowse link NW_004955430 3,450,151 3,796,983 RGD:9068941
G Cacna1g calcium voltage-gated channel subunit alpha1 G JBrowse link NW_004955451 11,136,885 11,194,321 RGD:9068941
G Cacna2d1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 JBrowse link NW_004955410 3,544,398 3,963,582 RGD:9068941
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 JBrowse link NW_004955407 33,807,581 33,814,356 RGD:9068941
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 JBrowse link NW_004955407 33,734,969 33,736,609 RGD:9068941
G Kcnj2 potassium inwardly rectifying channel subfamily J member 2 JBrowse link NW_004955478 2,734,795 2,745,217 RGD:9068941
G Pkp2 plakophilin 2 JBrowse link NW_004955505 2,878,001 2,959,299 RGD:9068941
G Scn1a sodium voltage-gated channel alpha subunit 1 JBrowse link NW_004955449 8,072,910 8,220,763 RGD:9068941
G Scn1b sodium voltage-gated channel beta subunit 1 JBrowse link NW_004955468 4,375,517 4,383,383 RGD:9068941
G Scn2b sodium voltage-gated channel beta subunit 2 JBrowse link NW_004955412 19,341,008 19,353,563 RGD:9068941
G Scn3b sodium voltage-gated channel beta subunit 3 JBrowse link NW_004955412 24,391,764 24,412,912 RGD:9068941
G Scn4b sodium voltage-gated channel beta subunit 4 JBrowse link NW_004955412 19,312,697 19,330,913 RGD:9068941
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link NW_004955427 25,295,517 25,371,419 RGD:9068941
membrane depolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1c calcium voltage-gated channel subunit alpha1 C JBrowse link NW_004955454 4,573,647 5,199,046 RGD:9068941
G Cacnb2 calcium voltage-gated channel auxiliary subunit beta 2 JBrowse link NW_004955429 9,642,725 9,966,175 RGD:9068941
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link NW_004955427 25,295,517 25,371,419 RGD:9068941
membrane repolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kcna5 potassium voltage-gated channel subfamily A member 5 JBrowse link NW_004955413 2,835,730 2,838,761 RGD:9068941
G Kcnj5 potassium inwardly rectifying channel subfamily J member 5 JBrowse link NW_004955412 29,850,097 29,874,213 RGD:9068941
G Kcnn2 potassium calcium-activated channel subfamily N member 2 JBrowse link NW_004955408 34,223,523 34,366,191 RGD:9068941
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link NW_004955422 14,212,563 14,544,556 RGD:9068941
membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 JBrowse link NW_004955407 33,807,581 33,814,356 RGD:9068941
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 JBrowse link NW_004955407 33,734,969 33,736,609 RGD:9068941
G Kcnh2 potassium voltage-gated channel subfamily H member 2 JBrowse link NW_004955491 5,391,444 5,422,241 RGD:9068941
G Kcnj8 potassium inwardly rectifying channel subfamily J member 8 JBrowse link NW_004955413 17,364,447 17,371,255 RGD:9068941
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link NW_004955422 14,212,563 14,544,556 RGD:9068941
negative regulation of membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kcne3 potassium voltage-gated channel subfamily E regulatory subunit 3 JBrowse link NW_004955414 17,166,537 17,200,385 RGD:9068941
negative regulation of ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bin1 bridging integrator 1 JBrowse link NW_004955459 3,376,149 3,423,157 RGD:9068941
positive regulation of atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trpm4 transient receptor potential cation channel subfamily M member 4 JBrowse link NW_004955559 1,539,036 1,581,800 RGD:9068941
positive regulation of cardiac muscle cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1h calcium voltage-gated channel subunit alpha1 H JBrowse link NW_004955442 16,047,965 16,108,862 RGD:9068941
regulation of atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank2 ankyrin 2 JBrowse link NW_004955457 13,624,590 13,938,427 RGD:9068941
G Gja5 gap junction protein alpha 5 JBrowse link NW_004955568 635,319 652,692 RGD:9068941
G Ryr2 ryanodine receptor 2 JBrowse link NW_004955492 2,647,597 3,275,512 RGD:9068941
regulation of cardiac muscle cell action potential involved in regulation of contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap9 A-kinase anchoring protein 9 JBrowse link NW_004955432 8,933,037 9,090,872 RGD:9068941
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 JBrowse link NW_004955482 7,233,336 7,295,754 RGD:9068941
G Cav3 caveolin 3 JBrowse link NW_004955561 326,008 335,911 RGD:9068941
G Fgf13 fibroblast growth factor 13 JBrowse link NW_004955489 6,122,707 6,621,624 RGD:9068941
G Hcn4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 JBrowse link NW_004955450 4,139,852 4,181,377 RGD:9068941
G Rangrf RAN guanine nucleotide release factor JBrowse link NW_004955467 8,622,843 8,624,401 RGD:9068941
regulation of cardiac muscle cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adora1 adenosine A1 receptor JBrowse link NW_004955406 39,148,811 39,183,577 RGD:9068941
G Adrb1 adrenoceptor beta 1 JBrowse link NW_004955431 19,025,663 19,027,026 RGD:9068941
G Akap6 A-kinase anchoring protein 6 JBrowse link NW_004955409 28,067,814 28,516,881 RGD:9068941
G Ank2 ankyrin 2 JBrowse link NW_004955457 13,624,590 13,938,427 RGD:9068941
G Atp1a1 ATPase Na+/K+ transporting subunit alpha 1 JBrowse link NW_004955435 19,537,224 19,563,631 RGD:9068941
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 JBrowse link NW_004955468 11,898,786 11,924,341 RGD:9068941
G Casq2 calsequestrin 2 JBrowse link NW_004955435 18,941,975 18,996,027 RGD:9068941
G Fxyd1 FXYD domain containing ion transport regulator 1 JBrowse link NW_004955468 4,456,909 4,460,895 RGD:9068941
G Gata4 GATA binding protein 4 JBrowse link NW_004955403 52,958,318 53,029,267 RGD:9068941
G Kcnj2 potassium inwardly rectifying channel subfamily J member 2 JBrowse link NW_004955478 2,734,795 2,745,217 RGD:9068941
G Pde4b phosphodiesterase 4B JBrowse link NW_004955423 24,464,503 24,906,409 RGD:9068941
G Pde4d phosphodiesterase 4D JBrowse link NW_004955446 7,914,326 9,252,527 RGD:9068941
G Pln phospholamban JBrowse link NW_004955436 1,439,098 1,447,070 RGD:9068941
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link NW_004955427 25,295,517 25,371,419 RGD:9068941
G Sri sorcin JBrowse link NW_004955432 5,541,311 5,559,781 RGD:9068941
G Stc1 stanniocalcin 1 JBrowse link NW_004955403 46,969,837 46,982,075 RGD:9068941
G Sumo1 small ubiquitin like modifier 1 JBrowse link NW_004955457 12,538,974 12,565,803 RGD:9068941
regulation of ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1c calcium voltage-gated channel subunit alpha1 C JBrowse link NW_004955454 4,573,647 5,199,046 RGD:9068941
G Cav1 caveolin 1 JBrowse link NW_004955432 22,258,262 22,292,403 RGD:9068941
G Ctnna3 catenin alpha 3 JBrowse link NW_004955425 18,623,645 20,126,200 RGD:9068941
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link NW_004955420 13,068,289 13,273,805 RGD:9068941
G Dsc2 desmocollin 2 JBrowse link NW_004955402 18,465,631 18,496,948 RGD:9068941
G Dsg2 desmoglein 2 JBrowse link NW_004955402 18,826,400 18,876,188 RGD:9068941
G Dsp desmoplakin JBrowse link NW_004955465 6,356,970 6,391,206 RGD:9068941
G Jup junction plakoglobin JBrowse link NW_004955451 15,993,055 16,004,152 RGD:9068941
G Pkp2 plakophilin 2 JBrowse link NW_004955505 2,878,001 2,959,299 RGD:9068941
G Ryr2 ryanodine receptor 2 JBrowse link NW_004955492 2,647,597 3,275,512 RGD:9068941
G Trpm4 transient receptor potential cation channel subfamily M member 4 JBrowse link NW_004955559 1,539,036 1,581,800 RGD:9068941
regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link NW_004955420 13,068,289 13,273,805 RGD:9068941
ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank2 ankyrin 2 JBrowse link NW_004955457 13,624,590 13,938,427 RGD:9068941
G Cav3 caveolin 3 JBrowse link NW_004955561 326,008 335,911 RGD:9068941
G Gja5 gap junction protein alpha 5 JBrowse link NW_004955568 635,319 652,692 RGD:9068941
G Gpd1l glycerol-3-phosphate dehydrogenase 1 like JBrowse link NW_004955430 23,481,957 23,536,407 RGD:9068941
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 JBrowse link NW_004955407 33,807,581 33,814,356 RGD:9068941
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 JBrowse link NW_004955407 33,734,969 33,736,609 RGD:9068941
G Kcne5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link NW_004955490 6,242,197 6,243,627 RGD:9068941
G Kcnh2 potassium voltage-gated channel subfamily H member 2 JBrowse link NW_004955491 5,391,444 5,422,241 RGD:9068941
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link NW_004955422 14,212,563 14,544,556 RGD:9068941
G Nedd4l NEDD4 like E3 ubiquitin protein ligase JBrowse link NW_004955402 42,339,380 42,688,661 RGD:9068941
G Pkp2 plakophilin 2 JBrowse link NW_004955505 2,878,001 2,959,299 RGD:9068941
G Ryr2 ryanodine receptor 2 JBrowse link NW_004955492 2,647,597 3,275,512 RGD:9068941
G Scn3b sodium voltage-gated channel beta subunit 3 JBrowse link NW_004955412 24,391,764 24,412,912 RGD:9068941
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link NW_004955427 25,295,517 25,371,419 RGD:9068941
G Snta1 syntrophin alpha 1 JBrowse link NW_004955422 27,844,699 27,872,104 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11825
    cellular process 11034
      movement of cell or subcellular component 1750
        actin filament-based movement 102
          actin-mediated cell contraction 84
            cardiac muscle cell contraction 63
              cardiac muscle cell action potential involved in contraction + 40
              negative regulation of cardiac muscle cell contraction + 2
              positive regulation of cardiac muscle cell contraction + 2
              regulation of cardiac muscle cell contraction + 38
Path 2
Term Annotations click to browse term
  biological_process 11825
    multicellular organismal process 6121
      system process 1546
        muscle system process 402
          muscle contraction 281
            striated muscle contraction 158
              cardiac muscle contraction 119
                cardiac muscle cell contraction 63
                  cardiac muscle cell action potential involved in contraction + 40
                  negative regulation of cardiac muscle cell contraction + 2
                  positive regulation of cardiac muscle cell contraction + 2
                  regulation of cardiac muscle cell contraction + 38
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.