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ONTOLOGY REPORT - ANNOTATIONS


Term:tubulin deacetylation
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Accession:GO:0090042 term browser browse the term
Definition:The removal of an acetyl group from tubulin. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.


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tubulin deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flna filamin A ISO (PMID:26157139) RGD PMID:26157139 NCBI chr  X:156,460,785...156,487,245
Ensembl chr  X:156,463,953...156,487,245
JBrowse link
G Hdac6 histone deacetylase 6 ISO MGI:MGI:3776868 (MGI:MGI:2651953|PMID:12606581), (MGI:MGI:3653156|PMID:16810319), (MGI:MGI:3757892|PMID:17785525), (MGI:MGI:4820954|PMID:19893491)
(PMID:19228685), (PMID:20308065), (PMID:23093407)
RGD PMID:12606581, PMID:16810319, PMID:17785525, PMID:19228685, PMID:19893491, PMID:20308065, PMID:23093407 MGI:MGI:2651953, MGI:MGI:3653156, MGI:MGI:3757892, MGI:MGI:4820954 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671
JBrowse link
G Sirt2 sirtuin 2 NOT IDA
ISO
IEA
PMID:17344398
MGI:MGI:1915724|MGI:MGI:2144471 (MGI:MGI:4462728|PMID:20562830), (MGI:MGI:5470016|PMID:23126280), (MGI:MGI:5488534|PMID:23502856), (MGI:MGI:5567889|PMID:24334550)
(PMID:18722353), (PMID:23886946), (PMID:24177535), (PMID:24681946)
(PMID:24177535)
GO_REF:0000107
RGD
Ensembl
PMID:18722353, PMID:20562830, PMID:23126280, PMID:23502856, PMID:23886946, PMID:24177535, PMID:24334550, PMID:24681946, PMID:17344398 GO_REF:0000107, MGI:MGI:4462728, MGI:MGI:5470016, MGI:MGI:5488534, MGI:MGI:5567889, RGD:8553877 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
negative regulation of tubulin deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bex4 brain expressed, X-linked 4 ISO
ISS
(PMID:27512957)
GO_REF:0000024
RGD
UniProt
PMID:27512957 GO_REF:0000024
G Dysf dysferlin ISO (MGI:MGI:5315068|PMID:22174839) RGD PMID:22174839 MGI:MGI:5315068 NCBI chr 4:115,700,942...115,901,873
Ensembl chr 4:115,712,850...115,901,873
JBrowse link
G Fry FRY microtubule binding protein ISO (MGI:MGI:5693359|PMID:23886946) RGD PMID:23886946 MGI:MGI:5693359 NCBI chr12:5,573,729...5,822,874
Ensembl chr12:5,573,729...5,822,874
JBrowse link
G Mapt microtubule-associated protein tau ISO
IEA
UniProtKB:Q9UBN7 (PMID:19457097)
GO_REF:0000107
UniProtKB:Q9Z2V5 (MGI:MGI:6119868|PMID:19457097)
RGD
Ensembl
PMID:19457097 GO_REF:0000107, MGI:MGI:6119868 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO UniProtKB:Q8BRK8 (MGI:MGI:6148443|PMID:27430620) RGD PMID:27430620 MGI:MGI:6148443 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 IEA
ISO
GO_REF:0000107
UniProtKB:Q5EG47 (MGI:MGI:6148443|PMID:27430620)
Ensembl
RGD
PMID:27430620 GO_REF:0000107, MGI:MGI:6148443 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569
JBrowse link
G Tppp tubulin polymerization promoting protein ISO
ISS
(PMID:20308065), (PMID:23093407)
GO_REF:0000024
RGD
UniProt
PMID:20308065, PMID:23093407 GO_REF:0000024 NCBI chr 1:31,866,755...31,890,778
Ensembl chr 1:31,870,899...31,890,778
JBrowse link
positive regulation of tubulin deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fnta farnesyltransferase, CAAX box, alpha ISO
IEA
(PMID:19228685)
GO_REF:0000107
RGD
Ensembl
PMID:19228685 GO_REF:0000107 NCBI chr16:70,834,957...70,854,724
Ensembl chr16:70,834,957...70,854,724
JBrowse link
G Hdac6 histone deacetylase 6 IMP RGD PMID:24464872 RGD:9681552 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671
JBrowse link
regulation of tubulin deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ep300 E1A binding protein p300 ISO (PMID:18722353) RGD PMID:18722353 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Nek3 NIMA-related kinase 3 ISO (MGI:MGI:4361101|PMID:19509051) RGD PMID:19509051 MGI:MGI:4361101 NCBI chr16:74,781,371...74,806,567
Ensembl chr16:74,785,281...74,806,149
JBrowse link
G Tada2a transcriptional adaptor 2A ISO MGI:MGI:1927664 (MGI:MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:MGI:4462728 NCBI chr10:71,393,701...71,441,435
Ensembl chr10:71,393,692...71,441,389
JBrowse link
G Tada3 transcriptional adaptor 3 ISO MGI:MGI:1927664 (MGI:MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:MGI:4462728 NCBI chr 4:145,318,417...145,330,291
Ensembl chr 4:145,318,435...145,329,878
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      primary metabolic process 10901
        protein metabolic process 6214
          cellular protein metabolic process 5552
            cellular protein modification process 3937
              protein deacylation 121
                protein deacetylation 109
                  tubulin deacetylation 15
                    negative regulation of tubulin deacetylation + 7
                    positive regulation of tubulin deacetylation + 2
                    regulation of tubulin deacetylation + 13
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      organic substance metabolic process 11636
        organonitrogen compound metabolic process 7132
          protein metabolic process 6214
            protein modification process 3937
              cellular protein modification process 3937
                protein deacylation 121
                  protein deacetylation 109
                    tubulin deacetylation 15
                      negative regulation of tubulin deacetylation + 7
                      positive regulation of tubulin deacetylation + 2
                      regulation of tubulin deacetylation + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.