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ONTOLOGY REPORT - ANNOTATIONS


Term:cochlea development
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Accession:GO:0090102 term browser browse the term
Definition:The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound.


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cochlea development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 ISO (MGI:MGI:6316556|PMID:30639848) RGD PMID:30639848 MGI:MGI:6316556 NCBI chr 8:77,107,355...77,237,483
Ensembl chr 8:77,107,536...77,237,483
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO (MGI:MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:MGI:1275896 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Calb1 calbindin 1 IEP RGD PMID:16120789 RGD:7175527 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G Ccna2 cyclin A2 IEP RGD PMID:19429027 RGD:10054469 NCBI chr 2:123,274,727...123,282,266
Ensembl chr 2:123,275,881...123,282,214
JBrowse link
G Cdh1 cadherin 1 ISO MGI:MGI:2389021|MGI:MGI:3841145 (MGI:MGI:5297632|PMID:21925491), (MGI:MGI:6316556|PMID:30639848) RGD PMID:21925491, PMID:30639848 MGI:MGI:5297632, MGI:MGI:6316556 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader ISO MGI:MGI:3574034 (MGI:MGI:4880797|PMID:21246654) RGD PMID:21246654 MGI:MGI:4880797 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Dchs1 dachsous cadherin-related 1 ISO MGI:MGI:4867020 (MGI:MGI:4939936|PMID:21303848) RGD PMID:21303848 MGI:MGI:4939936 NCBI chr 1:170,594,981...170,629,062
Ensembl chr 1:170,594,822...170,628,915
JBrowse link
G Epha4 Eph receptor A4 ISO (MGI:MGI:6316556|PMID:30639848) RGD PMID:30639848 MGI:MGI:6316556 NCBI chr 9:83,111,222...83,253,486
Ensembl chr 9:83,111,222...83,253,458
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:MGI:1931521 (MGI:MGI:3714212|PMID:17557302) RGD PMID:17557302 MGI:MGI:3714212 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Gabra5 gamma-aminobutyric acid type A receptor subunit alpha 5 ISO (MGI:MGI:3664129|PMID:17021187) RGD PMID:17021187 MGI:MGI:3664129 NCBI chr 1:112,833,941...112,947,482
Ensembl chr 1:112,833,944...112,947,451
JBrowse link
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 ISO (MGI:MGI:3664129|PMID:17021187) RGD PMID:17021187 MGI:MGI:3664129 NCBI chr10:27,973,694...28,193,072
Ensembl chr10:27,973,681...28,187,565
JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 ISO
IEA
(MGI:MGI:3664129|PMID:17021187)
GO_REF:0000107
RGD
Ensembl
PMID:17021187 GO_REF:0000107, MGI:MGI:3664129 NCBI chr 1:113,034,251...113,265,364
Ensembl chr 1:112,976,770...113,265,364
JBrowse link
G Gata2 GATA binding protein 2 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Gata3 GATA binding protein 3 IEP RGD PMID:20006695 RGD:9479067 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO
IEA
MGI:MGI:1341884|MGI:MGI:2149672 (MGI:MGI:3794221|PMID:18302773)
GO_REF:0000107
RGD
Ensembl
PMID:18302773 GO_REF:0000107, MGI:MGI:3794221 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO MGI:MGI:104853|MGI:MGI:104876|MGI:MGI:2447620 (MGI:MGI:3794221|PMID:18302773) RGD PMID:18302773 MGI:MGI:3794221 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Ift20 intraflagellar transport 20 ISO MGI:MGI:3817268 (MGI:MGI:5615303|PMID:25605782) RGD PMID:25605782 MGI:MGI:5615303 NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351
JBrowse link
G Ift27 intraflagellar transport 27 ISO MGI:MGI:4461616 (MGI:MGI:5615303|PMID:25605782) RGD PMID:25605782 MGI:MGI:5615303 NCBI chr 7:119,393,384...119,409,710
Ensembl chr 7:119,393,384...119,409,710
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:MGI:2135272 (MGI:MGI:3773480|PMID:18066062) RGD PMID:18066062 MGI:MGI:3773480 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Kcnk2 potassium two pore domain channel subfamily K member 2 IEP RGD PMID:15094499 RGD:2316534 NCBI chr13:107,690,111...107,886,476
Ensembl chr13:107,690,087...107,886,476
JBrowse link
G Kcnk3 potassium two pore domain channel subfamily K member 3 IEP RGD PMID:15094499 RGD:2316534 NCBI chr 6:27,154,274...27,190,209
Ensembl chr 6:27,151,612...27,190,132
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO (PMID:26196677) RGD PMID:26196677 NCBI chr 4:120,825,699...120,840,221
Ensembl chr 4:120,825,699...120,840,111
JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:18420419 RGD:2317082 NCBI chr 5:75,392,790...75,498,694
Ensembl chr 5:75,392,790...75,498,694
JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10494076 RGD:2325650 NCBI chr 1:139,890,537...140,262,503
Ensembl chr 1:139,890,560...140,262,503
JBrowse link
G Ocm oncomodulin IEP RGD PMID:16120789 RGD:7175527 NCBI chr12:12,611,121...12,634,472
Ensembl chr12:12,624,723...12,634,472
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:17828551 RGD:13208944 NCBI chr11:74,717,600...74,793,902
Ensembl chr11:74,720,254...74,793,803
JBrowse link
G Otof otoferlin IEP RGD PMID:17229086 RGD:2316502 NCBI chr 6:27,328,343...27,424,864
Ensembl chr 6:27,328,406...27,424,864
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 ISO (MGI:MGI:5477842|PMID:23533177) RGD PMID:23533177 MGI:MGI:5477842 NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Psap prosaposin IEA
ISO
GO_REF:0000107
MGI:MGI:1888378 (MGI:MGI:3694123|PMID:17167097)
Ensembl
RGD
PMID:17167097 GO_REF:0000107, MGI:MGI:3694123 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Pvalb parvalbumin IEP RGD PMID:16120789 RGD:7175527 NCBI chr 7:119,428,657...119,443,674
Ensembl chr 7:119,429,019...119,441,487
JBrowse link
G Rpgrip1l Rpgrip1-like ISO MGI:MGI:3716208 (MGI:MGI:5449641|PMID:22927466) RGD PMID:22927466 MGI:MGI:5449641 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:24064385 RGD:9999152 NCBI chr 7:30,215,231...30,274,993
Ensembl chr 7:30,216,104...30,274,984
JBrowse link
G Slc26a5 solute carrier family 26 member 5 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:9,795,811...9,860,904
Ensembl chr 4:9,821,541...9,860,571
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:MGI:4417931 (MGI:MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Sobp sine oculis binding protein homolog ISO (MGI:MGI:3801556|PMID:18579736) RGD PMID:18579736 MGI:MGI:3801556 NCBI chr20:47,731,713...47,910,466
Ensembl chr20:47,750,762...47,910,375
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:98715 (MGI:MGI:3773480|PMID:18066062) RGD PMID:18066062 MGI:MGI:3773480 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 ISO MGI:MGI:1915838 (MGI:MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:MGI:3814781 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:MGI:106613 (MGI:MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:MGI:3589836 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:MGI:108100|MGI:MGI:94941 (MGI:MGI:3589836|PMID:16116426), (MGI:MGI:3821448|PMID:19008950) RGD PMID:16116426, PMID:19008950 MGI:MGI:3589836, MGI:MGI:3821448 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO MGI:MGI:106613|MGI:MGI:2135272 (MGI:MGI:3821448|PMID:19008950) RGD PMID:19008950 MGI:MGI:3821448 NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO
IEA
MGI:MGI:1857803 (MGI:MGI:1335261|PMID:10072433)
GO_REF:0000107
RGD
Ensembl
PMID:10072433 GO_REF:0000107, MGI:MGI:1335261 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Frzb frizzled-related protein ISO MGI:MGI:98958 (MGI:MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:MGI:3714704 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
JBrowse link
G Fzd2 frizzled class receptor 2 ISO
IEA
MGI:MGI:2135272 (MGI:MGI:4837757|PMID:20940229)
GO_REF:0000107
RGD
Ensembl
PMID:20940229 GO_REF:0000107, MGI:MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1857509 (MGI:MGI:3709667|PMID:17395647) RGD PMID:17395647 MGI:MGI:3709667 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:MGI:2135272 (MGI:MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:MGI:4819429 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hpn hepsin ISO
ISS
(MGI:MGI:5306554|PMID:20683358)
GO_REF:0000024
RGD
UniProt
PMID:20683358 GO_REF:0000024, MGI:MGI:5306554 NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
JBrowse link
G Myo3a myosin IIIA ISO (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo3b myosin IIIB ISO (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Pax2 paired box 2 ISS
ISO
GO_REF:0000024
MGI:MGI:1857673|UniProtKB:Q00288 (MGI:MGI:3702803|PMID:16916509), (MGI:MGI:4822275|PMID:20727173), (MGI:MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055, PMID:16916509, PMID:20727173 GO_REF:0000024, MGI:MGI:3702803, MGI:MGI:4822275, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pou3f4 POU class 3 homeobox 4 ISO
ISS
UniProtKB:P70323 (MGI:MGI:5284768|PMID:18231833)
GO_REF:0000024
RGD
UniProt
PMID:18231833 GO_REF:0000024, MGI:MGI:5284768 NCBI chr  X:82,143,789...82,145,066
Ensembl chr  X:82,143,789...82,145,066
JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO MGI:MGI:3640803 (MGI:MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:MGI:2663662|MGI:MGI:2663669 (MGI:MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:MGI:2655195 (MGI:MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:2385468|MGI:MGI:3841145 (MGI:MGI:4454502|PMID:20346939)
GO_REF:0000024
RGD
UniProt
PMID:20346939 GO_REF:0000024, MGI:MGI:4454502 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:MGI:2179136|UniProtKB:P62515 (MGI:MGI:3765363|PMID:17825816), (MGI:MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:17825816, PMID:18231833 GO_REF:0000024, MGI:MGI:3765363, MGI:MGI:5284768 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbx18 T-box transcription factor 18 ISO MGI:MGI:3044915 (MGI:MGI:3788971|PMID:18353863) RGD PMID:18353863 MGI:MGI:3788971 NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
G Tshr thyroid stimulating hormone receptor IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:115,170,290...115,306,871
Ensembl chr 6:115,170,865...115,306,871
JBrowse link
G Tshr-ps1 thyroid stimulating hormone receptor, pseudogene 1 ISO (MGI:MGI:3652455|PMID:10575115) RGD PMID:10575115 MGI:MGI:3652455 NCBI chr 4:93,447,412...93,448,194 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:108100|MGI:MGI:1857642|MGI:MGI:1888513|MGI:MGI:2655333|MGI:MGI:98958 (MGI:MGI:3589836|PMID:16116426), (MGI:MGI:3714704|PMID:17433286), (MGI:MGI:3814781|PMID:18606138), (MGI:MGI:3821448|PMID:19008950), (MGI:MGI:4819429|PMID:20643356), (MGI:MGI:4837757|PMID:20940229) RGD PMID:16116426, PMID:17433286, PMID:18606138, PMID:19008950, PMID:20643356, PMID:20940229 MGI:MGI:3589836, MGI:MGI:3714704, MGI:MGI:3814781, MGI:MGI:3821448, MGI:MGI:4819429, MGI:MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1857617|MGI:MGI:2135272 (MGI:MGI:3714704|PMID:17433286)
GO_REF:0000107
RGD
Ensembl
PMID:17433286 GO_REF:0000107, MGI:MGI:3714704 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO
IEA
MGI:MGI:1861230 (MGI:MGI:5294688|PMID:21980308)
GO_REF:0000107
RGD
Ensembl
PMID:21980308 GO_REF:0000107, MGI:MGI:5294688 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    developmental process 6813
      anatomical structure development 6257
        cochlea development 63
          cochlea morphogenesis 28
Path 2
Term Annotations click to browse term
  biological_process 20015
    developmental process 6813
      anatomical structure development 6257
        multicellular organism development 5736
          system development 5273
            animal organ development 4027
              sensory organ development 693
                ear development 268
                  inner ear development 241
                    cochlea development 63
                      cochlea morphogenesis 28
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.