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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleic acid phosphodiester bond hydrolysis
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Accession:GO:0090305 term browser browse the term
Definition:The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
Synonyms:exact_synonym: nucleic acid cleavage


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nucleic acid phosphodiester bond hydrolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ac1576 uncharacterized LOC102552783 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:71,342,035...71,358,887
Ensembl chr10:71,342,035...71,358,190
JBrowse link
G Aen apoptosis enhancing nuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:140,584,328...140,593,749
Ensembl chr 1:140,584,380...140,593,745
JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:48,257,575...48,262,244
Ensembl chr12:48,257,609...48,262,243
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:82,874,242...82,907,467
Ensembl chr 3:82,874,248...82,906,581
JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:19,799,943...19,826,057
Ensembl chr16:19,800,463...19,803,796
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:23,146,085...23,166,676
Ensembl chr  X:23,146,085...23,166,675
JBrowse link
G Aplf aprataxin and PNKP like factor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:119,514,822...119,568,764
Ensembl chr 4:119,514,840...119,568,736
JBrowse link
G Aptx aprataxin IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:56,987,714...57,009,481
Ensembl chr 5:56,987,909...57,008,859
JBrowse link
G Aste1 asteroid homolog 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:113,936,991...113,954,833
Ensembl chr 8:113,936,991...113,954,832
JBrowse link
G Atad5 ATPase family, AAA domain containing 5 ISO MGI:4127920 (MGI:5763555|PMID:25404367) RGD PMID:25404367 MGI:5763555 NCBI chr10:67,427,042...67,475,825
Ensembl chr10:67,427,066...67,473,649
JBrowse link
G Dclre1a DNA cross-link repair 1A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:277,335,792...277,355,701
Ensembl chr 1:277,335,790...277,355,075
JBrowse link
G Dclre1b DNA cross-link repair 1B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:206,285,085...206,293,599
Ensembl chr 2:206,285,089...206,293,599
JBrowse link
G Dclre1c DNA cross-link repair 1C IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:78,782,512...78,812,140
Ensembl chr17:78,783,437...78,812,111
JBrowse link
G Ddx1 DEAD-box helicase 1 ISO (PMID:18710941) RGD PMID:18710941 NCBI chr 6:38,422,892...38,453,762
Ensembl chr 6:38,422,888...38,453,797
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108
G Dnase1l1 deoxyribonuclease 1-like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:156,429,521...156,438,066
Ensembl chr  X:156,429,585...156,438,066
JBrowse link
G Dxo decapping exoribonuclease ISS
ISO
IBA
GO_REF:0000024
(MGI:5488528|PMID:23523372)
PMID:21873635
UniProt
RGD
PMID:23523372, PMID:21873635 GO_REF:0000024, MGI:5488528, RGD:13792537 NCBI chr20:4,517,307...4,519,391
Ensembl chr20:4,517,307...4,519,389
JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:82,366,820...82,375,510
Ensembl chr10:82,367,084...82,374,171
JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:14,253,552...14,257,017
Ensembl chr10:14,254,252...14,256,930
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO
IEA
(PMID:22285541)
GO_REF:0000107
RGD
Ensembl
PMID:22285541 GO_REF:0000107 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:94,479,931...94,563,086
Ensembl chr 7:94,480,396...94,563,001
JBrowse link
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:21,613,148...21,684,483
Ensembl chr 1:21,613,148...21,684,480
JBrowse link
G Exd1 exonuclease 3'-5' domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:111,326,388...111,354,419
Ensembl chr 3:111,326,480...111,354,419
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 ISO (PMID:26807646) RGD PMID:26807646 NCBI chr 6:104,017,620...104,051,442
Ensembl chr 6:104,017,607...104,051,446
JBrowse link
G Exo1 exonuclease 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:93,936,989...93,962,749
Ensembl chr13:93,939,022...93,960,342
JBrowse link
G Exo5 exonuclease 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:139,849,930...139,853,247
Ensembl chr 5:139,849,930...139,853,247
JBrowse link
G Fancm FA complementation group M IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:86,823,195...86,877,067
Ensembl chr 6:86,823,684...86,876,633
JBrowse link
G Fen1 flap structure-specific endonuclease 1 ISO (PMID:18499658) RGD PMID:18499658 NCBI chr 1:226,251,516...226,256,160
Ensembl chr 1:226,251,518...226,255,886
JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:36,910,064...36,940,868
Ensembl chr 6:36,910,675...36,940,868
JBrowse link
G Harbi1 harbinger transposase derived 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:80,614,886...80,624,213
Ensembl chr 3:80,614,937...80,624,205
JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:65,081,591...65,102,344
Ensembl chr  X:65,081,591...65,102,380
JBrowse link
G Meiob meiosis specific with OB-fold IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:14,174,645...14,206,026
Ensembl chr10:14,174,732...14,206,025
JBrowse link
G Mgme1 mitochondrial genome maintenance exonuclease 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:138,397,925...138,406,672
Ensembl chr 3:138,398,011...138,406,666
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:13,304,355...13,350,329
Ensembl chr 8:13,305,152...13,352,489
JBrowse link
G Myg1 MYG1 exonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:143,929,662...143,936,865
Ensembl chr 7:143,929,662...143,936,864
JBrowse link
G N4bp2 NEDD4 binding protein 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:43,963,353...44,092,844
Ensembl chr14:44,038,614...44,078,897
JBrowse link
G Neil1 nei-like DNA glycosylase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:61,817,258...61,824,023
Ensembl chr 8:61,817,258...61,823,102
JBrowse link
G Pde12 phosphodiesterase 12 ISO (PMID:22285541) RGD PMID:22285541 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625
JBrowse link
G Pld3 phospholipase D family, member 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:84,339,269...84,361,686
Ensembl chr 1:84,339,261...84,353,725
JBrowse link
G Pld4 phospholipase D family, member 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:137,323,713...137,331,231
Ensembl chr 6:137,323,713...137,331,231
JBrowse link
G Plscr1 phospholipid scramblase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:99,625,523...99,645,882
Ensembl chr 8:99,625,545...99,725,217
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:141,172,117...141,188,893
Ensembl chr 1:141,172,531...141,188,031
JBrowse link
G Polq DNA polymerase theta IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:66,585,860...66,695,369
Ensembl chr11:66,585,881...66,695,353
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:60,461,513...60,469,646
Ensembl chr 2:60,461,551...60,469,685
JBrowse link
G Rad50 RAD50 double strand break repair protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:39,002,130...39,054,042
Ensembl chr10:39,001,498...39,054,142
JBrowse link
G Rad9a RAD9 checkpoint clamp component A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:219,443,347...219,450,574
Ensembl chr 1:219,444,092...219,450,451
JBrowse link
G Rad9b RAD9 checkpoint clamp component B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:39,699,076...39,731,218
Ensembl chr12:39,699,181...39,729,516
JBrowse link
G Rag1 recombination activating 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:91,206,394...91,217,491
Ensembl chr 3:91,206,394...91,217,491
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:3,134,630...3,227,702
Ensembl chr18:3,162,543...3,227,688
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:44,803,664...44,961,362
Ensembl chr20:44,803,666...44,961,382
JBrowse link
G Rexo1 RNA exonuclease 1 homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:12,022,268...12,041,660
Ensembl chr 7:12,022,285...12,041,701
JBrowse link
G Rexo1l1-ps1 REX1, RNA exonuclease 1 homolog-like 1, pseudogene 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:143,830,019...143,832,825
Ensembl chr 2:143,830,636...143,832,327
JBrowse link
G Rexo5 RNA exonuclease 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:189,549,960...189,643,698
Ensembl chr 1:189,549,960...189,622,094
JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic IEA GO_REF:0000108 GOC GO_REF:0000108
G Rnase1l1 ribonuclease, RNase A family, 1-like 1 (pancreatic) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,043,491...28,045,098
Ensembl chr15:28,043,758...28,044,210
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO (PMID:22231448) RGD PMID:22231448 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:198,114,514...198,120,061
Ensembl chr 1:198,112,245...198,120,061
JBrowse link
G Stk31 serine threonine kinase 31 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:79,055,493...79,153,849
Ensembl chr 4:79,055,280...79,153,831
JBrowse link
G Tatdn1 TatD DNase domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:98,782,164...98,813,001
Ensembl chr 7:98,782,178...98,804,499
JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:123,895,860...123,963,688
Ensembl chr 6:123,897,956...123,963,675
JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:42,229,667...42,241,025
Ensembl chr17:42,229,642...42,241,066
JBrowse link
G Tsen15 tRNA splicing endonuclease subunit 15 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:69,765,093...69,781,019
Ensembl chr13:69,765,091...69,781,019
JBrowse link
G Wrn WRN RecQ like helicase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:44,661,375...44,812,430
Ensembl chr13:44,661,398...44,798,543
JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:165,922,893...165,935,822
Ensembl chr 5:165,922,915...165,935,821
JBrowse link
G Dffb DNA fragmentation factor subunit beta IDA
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(PMID:15572351), (PMID:22253444)
InterPro
RGD
PMID:15572351, PMID:22253444, PMID:11425895, PMID:21873635 GO_REF:0000002, RGD:628524, RGD:13792537 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Dicer1 dicer 1 ribonuclease III IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 TAS
ISO
IBA
(MGI:2385551|PMID:12050166)
PMID:21873635
(PMID:23229555)
RGD PMID:12050166, PMID:23229555, PMID:9665719, PMID:21873635 MGI:2385551, RGD:728743, RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:26,022,855...26,025,523
Ensembl chr19:26,022,849...26,025,532
JBrowse link
G Dnase2b deoxyribonuclease 2 beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:252,436,363...252,475,506
Ensembl chr 2:252,436,332...252,451,999
JBrowse link
G Endog endonuclease G IBA
ISO
PMID:21873635
MGI:3034030|MGI:3514265 (MGI:3029597|PMID:14663139)
RGD PMID:14663139, PMID:21873635 MGI:3029597, RGD:13792537 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Exog exo/endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Foxl2 forkhead box L2 ISO (PMID:16153597) RGD PMID:16153597 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor ISO (MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:3843427 NCBI chr 7:117,514,529...117,538,342
Ensembl chr 7:117,514,533...117,538,342
JBrowse link
G Nol9 nucleolar protein 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:169,213,076...169,233,173
Ensembl chr 5:169,213,115...169,230,141
JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
cleavage involved in rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,069,387...37,072,758
Ensembl chr10:37,069,344...37,072,733
JBrowse link
G Nhp2 NHP2 ribonucleoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:38,397,466...38,409,924
Ensembl chr19:38,397,466...38,409,924
JBrowse link
G Rrp36 ribosomal RNA processing 36 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:16,618,853...16,627,128
Ensembl chr 9:16,619,040...16,625,609
JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,542,415...6,583,856
Ensembl chr16:6,542,216...6,587,619
JBrowse link
G Dcp1b decapping mRNA 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,249,654...151,287,018
Ensembl chr 4:151,250,041...151,285,702
JBrowse link
G Edc3 enhancer of mRNA decapping 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,482,126...62,527,665
Ensembl chr 8:62,482,140...62,526,202
JBrowse link
G Edc4 enhancer of mRNA decapping 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,852,659...37,864,651
Ensembl chr19:37,852,659...37,866,355
JBrowse link
DNA catabolic process, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1 deoxyribonuclease 1 ISS
ISO
IBA
PMID:29191910
(MGI:6094744|PMID:29191910)
PMID:21873635
RGD PMID:29191910, PMID:29191910, PMID:21873635 MGI:6094744, RGD:13464261, RGD:13792537 NCBI chr10:11,757,681...11,760,672
Ensembl chr10:11,757,682...11,760,620
JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,429,521...156,438,066
Ensembl chr  X:156,429,585...156,438,066
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,812,335...13,814,514
Ensembl chr10:13,812,707...13,814,304
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 ISS
ISO
IBA
PMID:29191910
(MGI:6094744|PMID:29191910)
PMID:21873635
RGD PMID:29191910, PMID:29191910, PMID:21873635 MGI:6094744, RGD:13464261, RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Endog endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Exog exo/endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Fbh1 F-box DNA helicase 1 ISO (PMID:23361013) RGD PMID:23361013 NCBI chr17:70,399,093...70,437,151
Ensembl chr17:70,399,049...70,437,144
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit ISO (PMID:23361013) RGD PMID:23361013 NCBI chr 1:220,862,474...220,867,973
Ensembl chr 1:220,862,386...220,867,815
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO
IBA
(PMID:21602889)
PMID:21873635
RGD PMID:21602889, PMID:21873635 RGD:13792537 NCBI chr 3:5,500,578...5,510,908
Ensembl chr 3:5,500,589...5,510,908
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO (PMID:20521842), (PMID:21491884), (PMID:24573677) RGD PMID:20521842, PMID:21491884, PMID:24573677 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:170,991,573...171,008,226
Ensembl chr 3:170,994,038...171,013,185
JBrowse link
DNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,540,145...189,549,891
Ensembl chr 1:189,540,145...189,549,891
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,406,009...136,533,408
Ensembl chr 5:136,406,130...136,533,389
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 ISO
IBA
(PMID:11401564)
PMID:21873635
RGD PMID:11401564, PMID:21873635 RGD:13792537 NCBI chr 1:140,602,553...140,608,892
Ensembl chr 1:140,601,791...140,608,946
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO
IBA
(PMID:21602889)
PMID:21873635
RGD PMID:21602889, PMID:21873635 RGD:13792537 NCBI chr 3:5,500,578...5,510,908
Ensembl chr 3:5,500,589...5,510,908
JBrowse link
G Trex1 three prime repair exonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Trex2 three prime repair exonuclease 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:157,374,305...157,375,913
Ensembl chr  X:157,374,305...157,375,913
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO (PMID:15565158) RGD PMID:15565158 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Fcf1 FCF1 rRNA-processing protein ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:108,796,182...108,808,051
Ensembl chr 6:108,796,182...108,808,048
JBrowse link
G Nop9 NOP9 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Tbl3 transducin (beta)-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,066,984...14,072,197
Ensembl chr10:14,066,948...14,072,230
JBrowse link
G Utp23 UTP23, small subunit processome component ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 7:91,384,329...91,389,605
Ensembl chr 7:91,384,187...91,389,598
JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G AC135409.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:50,604,768...50,605,053 JBrowse link
G AC141489.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:159,606,647...159,606,989 JBrowse link
G Fcf1 FCF1 rRNA-processing protein ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:108,796,182...108,808,051
Ensembl chr 6:108,796,182...108,808,048
JBrowse link
G Kri1 KRI1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:22,301,025...22,317,049
Ensembl chr 8:22,301,498...22,315,339
JBrowse link
G Nop9 NOP9 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
G Rps21 ribosomal protein S21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:175,629,176...175,630,198
Ensembl chr 3:175,629,374...175,630,048
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,606,647...159,606,990 JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,430,710...9,432,343
Ensembl chr 5:9,430,728...9,432,343
JBrowse link
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpp40 ribonuclease P/MRP subunit p40 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:150,433,567...150,471,783
Ensembl chr 4:150,433,570...150,471,834
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Tsr1 TSR1, ribosome maturation factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:61,746,070...61,757,518
Ensembl chr10:61,746,059...61,757,518
JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:50,604,768...50,605,053 JBrowse link
G AC141489.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:159,606,647...159,606,989 JBrowse link
G Rps21 ribosomal protein S21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:175,629,176...175,630,198
Ensembl chr 3:175,629,374...175,630,048
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,606,647...159,606,990 JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Nop9 NOP9 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Tbl3 transducin (beta)-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,066,984...14,072,197
Ensembl chr10:14,066,948...14,072,230
JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,540,145...189,549,891
Ensembl chr 1:189,540,145...189,549,891
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,406,009...136,533,408
Ensembl chr 5:136,406,130...136,533,389
JBrowse link
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
meiotic DNA double-strand break formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC119332.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:219,864,113...219,898,243 JBrowse link
G Hormad1 HORMA domain containing 1 ISS
ISO
GO_REF:0000024
(MGI:4868505|PMID:21079677), (MGI:5009722|PMID:21478856)
UniProt
RGD
PMID:21079677, PMID:21478856 GO_REF:0000024, MGI:4868505, MGI:5009722 NCBI chr 2:197,681,820...197,720,197
Ensembl chr 2:197,682,000...197,719,254
JBrowse link
G Iho1 interactor of HORMAD1 1 IBA
ISO
PMID:21873635
(MGI:5822944|PMID:27723721)
RGD PMID:27723721, PMID:21873635 MGI:5822944, RGD:13792537 NCBI chr 8:117,182,484...117,215,390
Ensembl chr 8:117,183,343...117,211,170
JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 IBA
ISO
PMID:21873635
(MGI:4457793|PMID:20551173)
RGD PMID:20551173, PMID:21873635 MGI:4457793, RGD:13792537 NCBI chr 8:89,369,417...89,556,942
Ensembl chr 8:89,369,417...89,556,942
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:13,304,355...13,350,329
Ensembl chr 8:13,305,152...13,352,489
JBrowse link
G RGD1563323 similar to hypothetical protein FLJ22531 ISO (MGI:5752405|PMID:26917764) RGD PMID:26917764 MGI:5752405 NCBI chr 1:219,864,108...219,952,143 JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:170,991,573...171,008,226
Ensembl chr 3:170,994,038...171,013,185
JBrowse link
meiotic DNA double-strand break formation involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd31 ankyrin repeat domain 31 ISO (MGI:6316415|PMID:31003867), (MGI:6316551|PMID:31000436) RGD PMID:31000436, PMID:31003867 MGI:6316415, MGI:6316551 NCBI chr 2:27,571,129...27,743,668 JBrowse link
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:21593607)
Ensembl
UniProt
RGD
PMID:21593607, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr10:51,478,378...51,501,167
Ensembl chr10:51,478,378...51,501,165
JBrowse link
mRNA cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 ISO (MGI:6114871|PMID:25164867) RGD PMID:25164867 MGI:6114871 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
G LOC103690054 DNA-directed RNA polymerase II subunit RPB9 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:91,041,173...91,042,258
Ensembl chr 1:91,041,214...91,042,230
Ensembl chr 1:91,041,214...91,042,230
JBrowse link
G Polr1h RNA polymerase I subunit H IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:2,088,518...2,092,436
Ensembl chr20:2,088,533...2,092,436
JBrowse link
G Polr2i RNA polymerase II subunit I IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:88,686,812...88,688,249
Ensembl chr 1:88,686,731...88,688,258
JBrowse link
mRNA cleavage involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 ISS
ISO
IEA
GO_REF:0000024
(MGI:5616320|PMID:16357216)
(PMID:15260970), (PMID:17524464), (PMID:18771919)
GO_REF:0000104
UniProt
RGD
PMID:15260970, PMID:16357216, PMID:17524464, PMID:18771919 GO_REF:0000024, GO_REF:0000104, MGI:5616320 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Mir196a microRNA 196a ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502, PMID:15361871 MGI:3042528, MGI:3510301 NCBI chr 7:144,584,235...144,584,344
Ensembl chr 7:144,584,235...144,584,344
JBrowse link
G Mir196b microRNA 196b ISO (MGI:3042528|PMID:15105502) RGD PMID:15105502 MGI:3042528 NCBI chr 4:82,199,056...82,199,140
Ensembl chr 4:82,199,056...82,199,140
JBrowse link
G Mir196c microRNA 196c ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502, PMID:15361871 MGI:3042528, MGI:3510301 NCBI chr10:84,113,578...84,113,657
Ensembl chr10:84,113,578...84,113,657
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
mRNA cleavage involved in gene silencing by siRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA
ISO
GO_REF:0000107
(PMID:15260970), (PMID:22795694)
Ensembl
RGD
PMID:15260970, PMID:22795694 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 ISO (PMID:21317875) RGD PMID:21317875 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha ISO (PMID:15572351)
MGI:2179456 (MGI:2182584|PMID:10601318), (MGI:3029597|PMID:14663139)
RGD PMID:10601318, PMID:14663139, PMID:15572351 MGI:2182584, MGI:3029597 NCBI chr 5:165,922,893...165,935,822
Ensembl chr 5:165,922,915...165,935,821
JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 IMP RGD PMID:27184051 RGD:13781945 NCBI chr 5:166,409,460...166,430,291
Ensembl chr 5:166,409,461...166,430,254
JBrowse link
G Pam16 presequence translocase associated motor 16 IDA RGD PMID:24069394 RGD:13462066 NCBI chr10:11,146,359...11,153,936
Ensembl chr10:11,146,359...11,153,936
JBrowse link
nucleotide-excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO
IBA
(PMID:8692841)
PMID:21873635
RGD PMID:8692841, PMID:21873635 RGD:13792537 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO
IBA
(PMID:17466626), (PMID:8692841)
PMID:21873635
RGD PMID:8692841, PMID:17466626, PMID:21873635 RGD:13792537 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:10413517) RGD PMID:10413517 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603015), (PMID:20603016), (PMID:25430771) RGD PMID:20603015, PMID:20603016, PMID:25430771 NCBI chr 1:125,182,117...125,209,772
Ensembl chr 1:125,181,838...125,209,727
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) RGD PMID:19506022 NCBI chr 4:145,282,828...145,289,367
Ensembl chr 4:145,282,797...145,289,326
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO
IBA
(PMID:21148310)
PMID:21873635
RGD PMID:21148310, PMID:21873635 RGD:13792537 NCBI chr 5:61,749,767...61,793,641
Ensembl chr 5:61,749,767...61,792,928
JBrowse link
nucleotide-excision repair, DNA incision, 3'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:7657672) RGD PMID:7657672 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:11790111) RGD PMID:11790111 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO
IBA
(PMID:7657672), (PMID:8090225)
PMID:21873635
RGD PMID:7657672, PMID:8090225, PMID:21873635 RGD:13792537 NCBI chr 9:50,928,847...50,970,962
Ensembl chr 9:50,925,619...50,970,955
JBrowse link
nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC117889.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:975,697...1,003,352 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO
IBA
(PMID:7657672)
PMID:21873635
RGD PMID:7657672, PMID:21873635 RGD:13792537 NCBI chr 1:80,256,973...80,268,198
Ensembl chr 1:80,256,973...80,268,198
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO
IBA
(PMID:11790111), (PMID:14728600)
PMID:21873635
RGD PMID:11790111, PMID:14728600, PMID:21873635 RGD:13792537 NCBI chr10:2,010,140...2,037,953
Ensembl chr10:2,010,648...2,037,891
JBrowse link
G Nthl1 nth-like DNA glycosylase 1 ISO
IBA
(PMID:8990169)
(MGI:1289919|PMID:9743625)
PMID:21873635
RGD PMID:8990169, PMID:9743625, PMID:21873635 MGI:1289919, RGD:13792537 NCBI chr10:13,996,660...14,002,827
Ensembl chr10:13,996,645...14,002,910
JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
(PMID:11350920)
GO_REF:0000107
RGD
Ensembl
PMID:11350920 GO_REF:0000107 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Endog endonuclease G IMP RGD PMID:16407272 RGD:9685355 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Hsf1 heat shock transcription factor 1 IMP RGD PMID:21192280 RGD:10403035 NCBI chr 7:117,538,523...117,565,478
Ensembl chr 7:117,538,523...117,565,478
JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 IMP RGD PMID:15125883 RGD:10402776 NCBI chr14:87,457,647...87,465,374
Ensembl chr14:87,457,647...87,465,374
JBrowse link
G Il6 interleukin 6 ISO (PMID:28433754) RGD PMID:28433754 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 zinc finger protein 36 ISO
ISS
(PMID:16364915)
GO_REF:0000024
RGD
UniProt
PMID:16364915 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
positive regulation of meiotic DNA double-strand break formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd31 ankyrin repeat domain 31 ISO (MGI:6316415|PMID:31003867), (MGI:6316551|PMID:31000436) RGD PMID:31000436, PMID:31003867 MGI:6316415, MGI:6316551 NCBI chr 2:27,571,129...27,743,668 JBrowse link
positive regulation of mRNA cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt21 nudix hydrolase 21 ISS
ISO
GO_REF:0000024
(PMID:15937220)
UniProt
RGD
PMID:15937220 GO_REF:0000024 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC096468.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:102,215,722...102,227,554 JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:125,870,372...125,898,039
Ensembl chr 6:125,870,372...125,898,874
JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:11,199,893...11,215,690
Ensembl chr12:11,199,898...11,215,708
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 7:60,385,688...60,417,661
Ensembl chr 7:60,385,688...60,416,925
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISS
ISO
GO_REF:0000024
(PMID:20695905), (PMID:23187700)
UniProt
RGD
PMID:20695905, PMID:23187700 GO_REF:0000024 NCBI chr 1:226,572,399...226,596,185
Ensembl chr 1:226,573,105...226,596,131
JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:104,882,726...104,909,746
Ensembl chr  X:104,882,704...104,909,739
JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:249,574,954...249,578,520
Ensembl chr 1:249,574,954...249,578,520
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr14:36,150,381...36,208,395
Ensembl chr14:36,150,399...36,208,373
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO
ISS
(PMID:9342333)
GO_REF:0000024
RGD
UniProt
PMID:9342333 GO_REF:0000024 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO (PMID:9342333) RGD PMID:9342333 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Nudt21 nudix hydrolase 21 ISO (PMID:20695905) RGD PMID:20695905 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific ISO
ISS
(PMID:21102410)
GO_REF:0000024
RGD
UniProt
PMID:21102410 GO_REF:0000024 NCBI chr 1:225,151,462...225,162,445
Ensembl chr 1:225,151,404...225,162,595
JBrowse link
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor, mitochondria associated 1 ISO MGI:1306796 (MGI:3577148|PMID:15703386) RGD PMID:15703386 MGI:3577148 NCBI chr  X:135,304,063...135,343,062
Ensembl chr  X:135,304,066...135,343,087
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 ISO MGI:1349414 (MGI:3577148|PMID:15703386) RGD PMID:15703386 MGI:3577148 NCBI chr 7:31,699,309...31,784,192
Ensembl chr 7:31,699,885...31,784,192
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO (PMID:12082630) RGD PMID:12082630 NCBI chr 5:107,823,323...107,832,405
Ensembl chr 5:107,823,330...107,841,175
JBrowse link
G Cidea cell death-inducing DFFA-like effector a ISO (MGI:1203887|PMID:9564035) RGD PMID:9564035 MGI:1203887 NCBI chr18:63,082,861...63,108,450
Ensembl chr18:63,098,144...63,108,051
JBrowse link
RNA phosphodiester bond hydrolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ang2 angiogenin, ribonuclease A family, member 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,103,688...28,121,494
Ensembl chr15:28,103,703...28,104,206
JBrowse link
G Dicer1 dicer 1 ribonuclease III IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Ear1 eosinophil-associated, ribonuclease A family, member 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,260,133...28,261,049
Ensembl chr15:28,260,411...28,260,866
JBrowse link
G Helz2 helicase with zinc finger 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:176,730,024...176,744,382
Ensembl chr 3:176,731,769...176,744,377
JBrowse link
G LOC100361866 eosinophil cationic protein-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,240,548...28,241,466
Ensembl chr15:28,240,731...28,241,198
JBrowse link
G LOC103690354 ribonuclease pancreatic beta-type IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,073,963...28,075,677
Ensembl chr15:28,074,953...28,075,411
JBrowse link
G LOC103694853 ribonuclease pancreatic gamma-type IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:28,128,078...28,128,536 JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic ISO
IBA
(PMID:9826755)
PMID:21873635
RGD PMID:9826755, PMID:21873635 RGD:13792537
G Rnase10 ribonuclease A family member 10 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,930,581...27,933,873
Ensembl chr15:27,933,211...27,933,849
JBrowse link
G Rnase11 ribonuclease A family member 11 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,972,201...27,977,885
Ensembl chr15:27,973,491...27,975,471
JBrowse link
G Rnase12 ribonuclease A family member 12 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,981,044...27,993,044
Ensembl chr15:27,981,226...27,981,663
JBrowse link
G Rnase13 ribonuclease A family member 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,322,851...28,325,875
Ensembl chr15:28,323,046...28,323,507
JBrowse link
G Rnase17 ribonuclease 17 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,204,043...28,204,929
Ensembl chr15:28,204,224...28,204,691
JBrowse link
G Rnase1l1 ribonuclease, RNase A family, 1-like 1 (pancreatic) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,043,491...28,045,098
Ensembl chr15:28,043,758...28,044,210
JBrowse link
G Rnase1l2 ribonuclease, RNase A family, 1-like 2 (pancreatic) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,127,147...28,128,797
Ensembl chr15:28,128,078...28,128,536
JBrowse link
G Rnase2 ribonuclease A family member 2 ISO (PMID:9826755) RGD PMID:9826755 NCBI chr15:28,154,482...28,155,291
Ensembl chr15:28,154,482...28,155,291
JBrowse link
G Rnase3 ribonuclease A family member 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,216,744...28,217,614
Ensembl chr15:28,216,744...28,217,614
JBrowse link
G Rnase4 ribonuclease A family member 4 ISO (PMID:3467790) RGD PMID:3467790 NCBI chr15:28,018,040...28,035,395
Ensembl chr15:28,018,040...28,035,389
Ensembl chr15:28,018,040...28,035,389
JBrowse link
G Rnase6 ribonuclease A family member k6 ISO (PMID:9826755) RGD PMID:9826755 NCBI chr15:28,080,307...28,084,269
Ensembl chr15:28,081,004...28,081,465
JBrowse link
G Rnase9 ribonuclease A family member 9 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,964,000...27,968,492
Ensembl chr15:27,964,804...27,968,358
JBrowse link
G Rnasel ribonuclease L IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:71,188,712...71,202,636
Ensembl chr13:71,192,142...71,202,625
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISS
ISO
GO_REF:0000024
(MGI:3842851|PMID:19322177)
UniProt
RGD
PMID:19322177 GO_REF:0000024, MGI:3842851 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
RNA phosphodiester bond hydrolysis, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC118772.1 IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr10:70,484,134...70,506,963 JBrowse link
G Ago1 argonaute RISC component 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,849,943...27,852,083
Ensembl chr15:27,849,979...27,852,082
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:43,363,792...43,391,712
Ensembl chr 6:43,363,792...43,391,712
JBrowse link
G Dbr1 debranching RNA lariats 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:107,826,690...107,838,186
Ensembl chr 8:107,826,424...107,838,339
JBrowse link
G Dgcr8 DGCR8 microprocessor complex subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:86,852,682...86,885,233
Ensembl chr11:86,852,711...86,885,224
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:21753850), (PMID:25549615) RGD PMID:21753850, PMID:25549615 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Drosha drosha ribonuclease III IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Edc3 enhancer of mRNA decapping 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:62,482,126...62,527,665
Ensembl chr 8:62,482,140...62,526,202
JBrowse link
G Endog endonuclease G IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Endou endonuclease, poly(U)-specific IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:139,202,342...139,223,022
Ensembl chr 7:139,201,054...139,223,116
JBrowse link
G Endov endonuclease V IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:108,630,723...108,646,679
Ensembl chr10:108,630,823...108,646,677
JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:192,126,023...192,142,865
Ensembl chr 1:192,126,023...192,142,854
JBrowse link
G Exog exo/endonuclease G IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Fen1 flap structure-specific endonuclease 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:226,251,516...226,256,160
Ensembl chr 1:226,251,518...226,255,886
JBrowse link
G Khnyn KH and NYN domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,551,570...34,563,729
Ensembl chr15:34,552,410...34,561,727
JBrowse link
G Lactb2 lactamase, beta 2 ISO
ISS
(PMID:26826708)
GO_REF:0000024
RGD
UniProt
PMID:26826708 GO_REF:0000024 NCBI chr 5:4,982,348...5,005,111
Ensembl chr 5:4,982,348...5,005,109
JBrowse link
G LOC103690354 ribonuclease pancreatic beta-type IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,073,963...28,075,677
Ensembl chr15:28,074,953...28,075,411
JBrowse link
G LOC103694852 ribonuclease K6-like IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr15:28,081,004...28,081,465 JBrowse link
G LOC103694853 ribonuclease pancreatic gamma-type IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr15:28,128,078...28,128,536 JBrowse link
G LOC688828 similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:113,687,983...113,689,657
Ensembl chr 8:113,687,975...113,689,681
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:38,397,466...38,409,924
Ensembl chr19:38,397,466...38,409,924
JBrowse link
G Nudt16 nudix hydrolase 16 ISO (PMID:29483298) RGD PMID:29483298 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:10,829,866...10,831,782
Ensembl chr10:10,829,867...10,831,782
JBrowse link
G Nynrin NYN domain and retroviral integrase containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,520,040...34,541,671
Ensembl chr15:34,520,142...34,539,930
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:31,608,641...31,629,961
Ensembl chr12:31,609,053...31,629,881
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:13,208,774...13,251,970
Ensembl chr 8:13,208,774...13,251,812
JBrowse link
G Pop1 POP1 homolog, ribonuclease P/MRP subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:73,270,403...73,298,209
Ensembl chr 7:73,270,455...73,298,239
JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:94,661,127...94,669,461
Ensembl chr 1:94,661,128...94,669,461
JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:47,138,346...47,143,152
Ensembl chr12:47,138,346...47,142,852
JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,259,713...22,260,754
Ensembl chr12:22,259,713...22,260,754
JBrowse link
G Prorp protein only RNase P catalytic subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:76,079,880...76,171,298
Ensembl chr 6:76,079,880...76,171,296
JBrowse link
G Rida reactive intermediate imine deaminase A homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:73,256,506...73,270,308
Ensembl chr 7:73,256,508...73,270,308
JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic IEA GO_REF:0000108 GOC GO_REF:0000108
G Rnase1l1 ribonuclease, RNase A family, 1-like 1 (pancreatic) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,043,491...28,045,098
Ensembl chr15:28,043,758...28,044,210
JBrowse link
G Rnase1l2 ribonuclease, RNase A family, 1-like 2 (pancreatic) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,127,147...28,128,797
Ensembl chr15:28,128,078...28,128,536
JBrowse link
G Rnase6 ribonuclease A family member k6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,080,307...28,084,269
Ensembl chr15:28,081,004...28,081,465
JBrowse link
G Rnaseh1 ribonuclease H1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:47,916,188...47,925,582
Ensembl chr 6:47,916,188...47,925,571
JBrowse link
G Rnaseh2a ribonuclease H2, subunit A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:26,074,980...26,084,780
Ensembl chr19:26,074,987...26,084,679
JBrowse link
G Rnaseh2b ribonuclease H2, subunit B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:45,422,010...45,472,792
Ensembl chr15:45,422,010...45,464,892
JBrowse link
G Rnasek ribonuclease K IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:56,848,367...56,850,085
Ensembl chr10:56,848,369...56,850,085
JBrowse link
G Rnaset2 ribonuclease T2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:53,174,879...53,192,048
Ensembl chr 1:53,174,879...53,192,048
JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:18,625,963...18,636,157
Ensembl chr15:18,625,964...18,632,536
JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:2,515,541...2,517,471
Ensembl chr20:2,515,520...2,517,498
JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:62,283,336...62,284,716
Ensembl chr 8:62,283,336...62,284,716
JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:254,697,247...254,720,093
Ensembl chr 1:254,697,247...254,720,087
JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:78,915,450...78,919,144
Ensembl chr17:78,915,604...78,919,143
JBrowse link
G Slfn13 schlafen family member 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:70,326,157...70,343,024
Ensembl chr10:70,326,157...70,342,492
JBrowse link
G Slfn14 schlafen family member 14 ISO (MGI:5705207|PMID:25996083) RGD PMID:25996083 MGI:5705207 NCBI chr10:70,493,340...70,504,810 JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:61,526,024...61,542,583
NCBI chr10:61,771,912...62,007,030
Ensembl chr10:61,772,449...62,007,030
Ensembl chr10:61,772,449...62,007,030
JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:55,772,377...56,171,669
Ensembl chr 4:55,772,377...56,171,668
JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:147,455,506...147,490,869
Ensembl chr 4:147,455,533...147,490,733
JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:64,023,924...64,031,756
Ensembl chr 1:64,024,240...64,030,175
Ensembl chr 1:64,024,240...64,030,175
JBrowse link
G Tsen34l1 tRNA splicing endonuclease subunit 34-like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:64,092,224...64,100,061
Ensembl chr 1:64,092,226...64,099,277
JBrowse link
G Tsn translin IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:34,240,809...34,251,671
Ensembl chr13:34,238,717...34,253,910
JBrowse link
G Tsnax translin-associated factor X IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:57,771,539...57,785,567
Ensembl chr19:57,771,398...57,785,543
JBrowse link
G Ybey ybeY metalloendoribonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,917,111...12,926,587
Ensembl chr20:12,917,111...12,926,587
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
IBA
ISS
(PMID:22055188)
(MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22055188, PMID:26000482, PMID:26255671, PMID:21873635 GO_REF:0000024, MGI:5706859, MGI:5751631, RGD:13792537 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zc3h12b zinc finger CCCH-type containing 12B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:65,040,032...65,074,857
Ensembl chr  X:65,040,104...65,074,712
JBrowse link
G Zc3h12c zinc finger CCCH type containing 12C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,639,439...56,696,968
Ensembl chr 8:56,641,808...56,696,968
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:1,937,620...1,972,919
Ensembl chr 1:1,938,419...1,972,918
JBrowse link
RNA phosphodiester bond hydrolysis, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel1 angel homolog 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:110,644,327...110,681,397
Ensembl chr 6:110,644,267...110,681,408
JBrowse link
G Angel2 angel homolog 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:109,505,021...109,520,976
Ensembl chr13:109,505,697...109,520,419
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:59,526,105...59,617,307
Ensembl chr 7:59,527,124...59,587,385
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:64,130,823...64,147,066
Ensembl chr 1:64,130,908...64,147,251
JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:35,144,291...35,195,126
Ensembl chr10:35,146,337...35,187,416
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:43,538,150...43,551,271
Ensembl chr10:43,538,160...43,551,271
JBrowse link
G Dcp2 decapping mRNA 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:83,466,330...83,494,107
Ensembl chr15:83,466,428...83,494,423
JBrowse link
G Dis3l DIS3-like exosome 3'-5' exoribonuclease IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:69,771,211...69,807,880
Ensembl chr 8:69,771,197...69,807,826
JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:104,017,620...104,051,442
Ensembl chr 6:104,017,607...104,051,446
JBrowse link
G Exosc1 exosome component 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:261,169,798...261,179,865
Ensembl chr 1:261,170,229...261,179,790
JBrowse link
G Exosc4 exosome component 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Exosc5 exosome component 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:82,452,104...82,461,607
Ensembl chr 1:82,452,469...82,461,606
JBrowse link
G Exosc6 exosome component 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:43,190,879...43,193,164
Ensembl chr19:43,191,390...43,192,208
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:140,602,553...140,608,892
Ensembl chr 1:140,601,791...140,608,946
JBrowse link
G Isg20l2 interferon stimulated exonuclease gene 20-like 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:187,302,192...187,311,677
Ensembl chr 2:187,302,192...187,311,676
JBrowse link
G LOC100912393 mRNA-decapping enzyme 2-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:3,940,948...3,965,964
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Noct nocturnin IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:2,717,021...2,736,541
Ensembl chr 7:2,718,700...2,736,157
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:9,214,116...9,331,901
Ensembl chr12:9,216,536...9,331,195
JBrowse link
G Parn poly(A)-specific ribonuclease ISO (PMID:26482878) RGD PMID:26482878 NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
JBrowse link
G Pde12 phosphodiesterase 12 IEA
ISO
GO_REF:0000107
(PMID:21245038), (PMID:21666256)
Ensembl
RGD
PMID:21245038, PMID:21666256 GO_REF:0000107 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Pnldc1 PARN like, ribonuclease domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:48,038,830...48,058,400
Ensembl chr 1:48,039,909...48,058,400
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Rexo2 RNA exonuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:52,802,604...52,814,321
Ensembl chr 8:52,802,595...52,814,321
JBrowse link
G Toe1 target of EGR1, exonuclease ISO (PMID:17178830) RGD PMID:17178830 NCBI chr 5:135,659,733...135,663,299
Ensembl chr 5:135,659,734...135,663,299
JBrowse link
G Trir telomerase RNA component interacting RNase ISO
IBA
(PMID:28322335)
PMID:21873635
RGD PMID:28322335, PMID:21873635 RGD:13792537 NCBI chr19:26,142,720...26,146,136
Ensembl chr19:26,142,720...26,146,136
JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:10,105,750...10,118,701
Ensembl chr19:10,105,701...10,119,128
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO (MGI:86601|PMID:9049243) RGD PMID:9049243 MGI:86601 NCBI chr 8:103,774,125...103,883,563
Ensembl chr 8:103,774,358...103,878,899
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
tRNA 3'-trailer cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr3k RNA polymerase III subunit K IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:177,374,812...177,379,009
Ensembl chr 3:177,374,812...177,379,008
JBrowse link
tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:69,706,522...69,723,869
Ensembl chr18:69,706,522...69,723,869
JBrowse link
UV-damage excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO MGI:1931883 (MGI:3697767|PMID:17049932) RGD PMID:17049932 MGI:3697767 NCBI chr 4:123,134,457...123,161,985
Ensembl chr 4:123,134,457...123,161,985
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      organic substance metabolic process 11643
        macromolecule metabolic process 10077
          nucleic acid metabolic process 4984
            nucleic acid phosphodiester bond hydrolysis 276
              DNA catabolic process, endonucleolytic + 27
              DNA catabolic process, exonucleolytic 8
              RNA phosphodiester bond hydrolysis + 168
              UV-damage excision repair, DNA incision 1
              deadenylation-independent decapping of nuclear-transcribed mRNA + 5
              meiotic DNA double-strand break formation + 8
              nucleotide-excision repair, DNA incision + 10
              viral DNA cleavage involved in viral genome maturation 0
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        cellular aromatic compound metabolic process 5700
          nucleobase-containing compound metabolic process 5488
            nucleic acid metabolic process 4984
              nucleic acid phosphodiester bond hydrolysis 276
                DNA catabolic process, endonucleolytic + 27
                DNA catabolic process, exonucleolytic 8
                RNA phosphodiester bond hydrolysis + 168
                UV-damage excision repair, DNA incision 1
                deadenylation-independent decapping of nuclear-transcribed mRNA + 5
                meiotic DNA double-strand break formation + 8
                nucleotide-excision repair, DNA incision + 10
                viral DNA cleavage involved in viral genome maturation 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.