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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA methylation-dependent heterochromatin assembly
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Accession:GO:0090308 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin.
Synonyms:broad_synonym: regulation of methylation-dependent chromatin silencing


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regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO (PMID:21496894) RGD PMID:21496894 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO
ISS
(MGI:MGI:5285126|PMID:21496894)
GO_REF:0000024
RGD
UniProt
PMID:21496894 GO_REF:0000024, MGI:MGI:5285126 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (PMID:21496894) RGD PMID:21496894 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO (PMID:27732843) RGD PMID:27732843 NCBI chr 4:170,476,998...170,563,063
Ensembl chr 4:170,518,673...170,559,532
JBrowse link
G Dnmt1 DNA methyltransferase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24623306)
Ensembl
UniProt
RGD
PMID:24623306 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (PMID:28581500), (PMID:29211708)
(MGI:MGI:6271895|PMID:29728365)
RGD PMID:28581500, PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISS
ISO
GO_REF:0000024
(PMID:28581500), (PMID:29211708)
UniProt
RGD
PMID:28581500, PMID:29211708 GO_REF:0000024 NCBI chr15:36,918,843...36,946,712
Ensembl chr15:36,918,843...36,946,708
JBrowse link
G Pphln1 periphilin 1 ISO (PMID:28581500) RGD PMID:28581500 NCBI chr 7:134,602,109...134,693,807
Ensembl chr 7:134,603,121...134,695,864
JBrowse link
G Resf1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) RGD PMID:29728365 MGI:MGI:6271895 NCBI chr 4:183,879,177...183,905,807
Ensembl chr 4:183,896,303...183,905,297
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO
IBA
(PMID:24623306), (PMID:27732843)
PMID:21873635
(MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
RGD PMID:20164836, PMID:24623306, PMID:27732843, PMID:29728365, PMID:21873635 MGI:MGI:5440670, MGI:MGI:6271895, RGD:13792537 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:38,699,135...39,745,035
Ensembl chr15:39,712,861...39,742,103
Ensembl chr15:39,712,861...39,742,103
JBrowse link
G Tasor transcription activation suppressor ISO (PMID:28581500), (PMID:29211708) RGD PMID:28581500, PMID:29211708 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Trim28 tripartite motif-containing 28 ISO
ISS
(PMID:24623306)
(MGI:MGI:5440670|PMID:20164836)
GO_REF:0000024
RGD
UniProt
PMID:20164836, PMID:24623306 GO_REF:0000024, MGI:MGI:5440670 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    cellular process 18791
      regulation of cellular process 12570
        regulation of cellular component biogenesis 1048
          regulation of chromatin assembly 22
            regulation of heterochromatin assembly 20
              regulation of DNA methylation-dependent heterochromatin assembly 14
                negative regulation of DNA methylation-dependent heterochromatin assembly 3
                positive regulation of DNA methylation-dependent heterochromatin assembly 10
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                regulation of RNA metabolic process 3616
                  regulation of RNA biosynthetic process 3343
                    negative regulation of RNA biosynthetic process 1376
                      negative regulation of nucleic acid-templated transcription 1374
                        negative regulation of transcription, DNA-templated 1341
                          chromatin organization involved in negative regulation of transcription 130
                            heterochromatin assembly 52
                              regulation of heterochromatin assembly 20
                                regulation of DNA methylation-dependent heterochromatin assembly 14
                                  negative regulation of DNA methylation-dependent heterochromatin assembly 3
                                  positive regulation of DNA methylation-dependent heterochromatin assembly 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.