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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of DNA methylation-dependent heterochromatin assembly
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Accession:GO:0090309 term browser browse the term
Definition:Any process that increases the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin.
Synonyms:broad_synonym: positive regulation of methylation-dependent chromatin silencing


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positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO (PMID:27732843) RGD PMID:27732843 NCBI chr 4:170,476,998...170,563,063
Ensembl chr 4:170,518,673...170,559,532
JBrowse link
G Dnmt1 DNA methyltransferase 1 IEA
ISO
ISS
GO_REF:0000107
(PMID:24623306)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24623306 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (PMID:28581500), (PMID:29211708)
(MGI:MGI:6271895|PMID:29728365)
RGD PMID:28581500, PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISS
ISO
GO_REF:0000024
(PMID:28581500), (PMID:29211708)
UniProt
RGD
PMID:28581500, PMID:29211708 GO_REF:0000024 NCBI chr15:36,918,843...36,946,712
Ensembl chr15:36,918,843...36,946,708
JBrowse link
G Pphln1 periphilin 1 ISO (PMID:28581500) RGD PMID:28581500 NCBI chr 7:134,602,109...134,693,807
Ensembl chr 7:134,603,121...134,695,864
JBrowse link
G Resf1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) RGD PMID:29728365 MGI:MGI:6271895 NCBI chr 4:183,879,177...183,905,807
Ensembl chr 4:183,896,303...183,905,297
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO
IBA
(PMID:24623306), (PMID:27732843)
PMID:21873635
(MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
RGD PMID:20164836, PMID:24623306, PMID:27732843, PMID:29728365, PMID:21873635 MGI:MGI:5440670, MGI:MGI:6271895, RGD:13792537 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:38,699,135...39,745,035
Ensembl chr15:39,712,861...39,742,103
Ensembl chr15:39,712,861...39,742,103
JBrowse link
G Tasor transcription activation suppressor ISO (PMID:28581500), (PMID:29211708) RGD PMID:28581500, PMID:29211708 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Trim28 tripartite motif-containing 28 ISO
ISS
(PMID:24623306)
(MGI:MGI:5440670|PMID:20164836)
GO_REF:0000024
RGD
UniProt
PMID:20164836, PMID:24623306 GO_REF:0000024, MGI:MGI:5440670 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      positive regulation of metabolic process 4057
        positive regulation of macromolecule metabolic process 3759
          positive regulation of DNA methylation-dependent heterochromatin assembly 10
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleic acid metabolic process 4985
              RNA metabolic process 4469
                RNA biosynthetic process 3477
                  regulation of RNA biosynthetic process 3341
                    regulation of nucleic acid-templated transcription 3336
                      negative regulation of nucleic acid-templated transcription 1376
                        negative regulation of transcription, DNA-templated 1346
                          chromatin organization involved in negative regulation of transcription 130
                            heterochromatin assembly 52
                              regulation of heterochromatin assembly 20
                                regulation of DNA methylation-dependent heterochromatin assembly 14
                                  positive regulation of DNA methylation-dependent heterochromatin assembly 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.