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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA-dependent DNA replication
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Accession:GO:0090329 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of DNA-dependent DNA replication, the process in which new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.


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regulation of DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:1624291
negative regulation of DNA endoreduplication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo5 F-box protein 5 JBrowse link 1 42,461,277 42,467,646 RGD:1624291
negative regulation of DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gmnn geminin, DNA replication inhibitor JBrowse link 17 42,302,523 42,310,783 RGD:1624291
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:11557986
G Lig3 DNA ligase 3 JBrowse link 10 70,134,734 70,158,051 RGD:1624291
positive regulation of DNA endoreduplication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G E2f7 E2F transcription factor 7 JBrowse link 7 53,275,659 53,318,261 RGD:1624291
RGD:1600115
G E2f8 E2F transcription factor 8 JBrowse link 1 104,185,436 104,203,683 RGD:1600115
RGD:1624291
positive regulation of DNA-dependent DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdt1 chromatin licensing and DNA replication factor 1 JBrowse link 19 55,381,565 55,386,511 RGD:1624291
positive regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk2 cyclin dependent kinase 2 JBrowse link 7 3,124,953 3,132,533 RGD:1624291
RGD:1600115
G Ciz1 CDKN1A interacting zinc finger protein 1 JBrowse link 3 11,392,046 11,409,218 RGD:1624291
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chtf18 chromosome transmission fidelity factor 18 JBrowse link 10 15,090,762 15,098,825 RGD:1624291
G Chtf8 chromosome transmission fidelity factor 8 JBrowse link 19 39,077,580 39,087,880 RGD:1624291
RGD:1600115
G Dscc1 DNA replication and sister chromatid cohesion 1 JBrowse link 7 94,759,076 94,774,787 RGD:1624291
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:11535022
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:1624291
G Polg2 DNA polymerase gamma 2, accessory subunit JBrowse link 10 94,968,836 94,979,259 RGD:1624291
G Rfc2 replication factor C subunit 2 JBrowse link 12 25,130,375 25,143,480 RGD:1624291
RGD:1600115
G Rfc3 replication factor C subunit 3 JBrowse link 12 1,460,581 1,471,344 RGD:1624291
G Rfc4 replication factor C subunit 4 JBrowse link 11 81,358,592 81,373,044 RGD:1624291
G Rfc5 replication factor C subunit 5 JBrowse link 12 44,931,494 44,941,051 RGD:1624291
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stoml2 stomatin like 2 JBrowse link 5 58,472,561 58,476,158 RGD:1624291
RGD:1600115
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgfr1 Fibroblast growth factor receptor 1 JBrowse link 16 71,265,390 71,319,046 RGD:1624291
RGD:1600115
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1600115
RGD:1624291
G Cdc7 cell division cycle 7 JBrowse link 14 3,826,658 3,846,891 RGD:1624291
G Dbf4 DBF4 zinc finger JBrowse link 4 22,898,527 22,914,091 RGD:13792537
G Dbf4b DBF4 zinc finger B JBrowse link 10 90,710,468 90,723,313 RGD:1624291
G Ino80 INO80 complex ATPase subunit JBrowse link 3 111,186,371 111,266,542 RGD:1624291
G Wiz WIZ zinc finger JBrowse link 7 14,374,358 14,402,647 RGD:1624291
regulation of DNA endoreduplication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Senp2 SUMO specific peptidase 2 JBrowse link 11 82,627,973 82,664,702 RGD:1624291
regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp365 zinc finger protein 365 JBrowse link 20 22,060,160 22,083,766 RGD:1624291
RGD:1600115
regulation of DNA-dependent DNA replication initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdt1 chromatin licensing and DNA replication factor 1 JBrowse link 19 55,381,565 55,386,511 RGD:1624291
RGD:13792537
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:1624291
RGD:1600115
G Ticrr TOPBP1-interacting checkpoint and replication regulator JBrowse link 1 141,391,738 141,433,615 RGD:1624291
G Wdr18 WD repeat domain 18 JBrowse link 7 12,561,318 12,569,120 RGD:13792537
G Wrnip1 WRN helicase interacting protein 1 JBrowse link 17 32,933,395 32,953,641 RGD:1600115
RGD:1624291
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zmpste24 zinc metallopeptidase STE24 JBrowse link 5 139,982,404 140,015,541 RGD:1624291
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:1624291
G Cdt1 chromatin licensing and DNA replication factor 1 JBrowse link 19 55,381,565 55,386,511 RGD:1624291
G Dach1 dachshund family transcription factor 1 JBrowse link 15 82,095,003 82,482,272 RGD:1624291
G Ilkap ILK associated serine/threonine phosphatase JBrowse link 9 98,514,599 98,536,586 RGD:632254
G Nuggc nuclear GTPase, germinal center associated JBrowse link 15 49,011,951 49,055,246 RGD:1624291
replication fork arrest term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Msh3 mutS homolog 3 JBrowse link 2 21,790,048 21,931,791 RGD:13792537
G Slfn13 schlafen family member 13 JBrowse link 10 70,326,157 70,343,024 RGD:1624291
G Timeless timeless circadian regulator JBrowse link 7 2,643,288 2,667,329 RGD:13792537
G Tipin timeless interacting protein JBrowse link 8 69,753,363 69,768,640 RGD:13792537
G Tipinl1 TIMELESS interacting protein like 1 JBrowse link 5 173,761 174,959 RGD:13792537
replication fork protection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca2 BRCA2, DNA repair associated JBrowse link 12 503,660 544,754 RGD:1624291
RGD:1600115
G Donson DNA replication fork stabilization factor DONSON JBrowse link 11 31,834,608 31,847,751 RGD:1624291
G Fbh1 F-box DNA helicase 1 JBrowse link 17 70,399,093 70,437,151 RGD:1624291
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 JBrowse link 9 79,943,775 79,990,230 RGD:13792537
G Timeless timeless circadian regulator JBrowse link 7 2,643,288 2,667,329 RGD:13792537
G Tipin timeless interacting protein JBrowse link 8 69,753,363 69,768,640 RGD:13792537
RGD:1600115
G Tipinl1 TIMELESS interacting protein like 1 JBrowse link 5 173,761 174,959 RGD:13792537
G Zfp830 zinc finger protein 830 JBrowse link 10 70,118,250 70,119,714 RGD:1624291
RGD:13792537
RGD:1600115
G Zranb3 zinc finger RANBP2-type containing 3 JBrowse link 13 44,661,375 44,812,430 RGD:1624291
RGD:13792537
signal transduction involved in intra-S DNA damage checkpoint term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chek2 checkpoint kinase 2 JBrowse link 12 51,845,574 51,878,098 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19576
    regulation of biological process 12839
      regulation of metabolic process 6833
        regulation of macromolecule metabolic process 6325
          regulation of macromolecule biosynthetic process 3753
            regulation of cellular macromolecule biosynthetic process 3624
              regulation of DNA replication 115
                regulation of DNA-dependent DNA replication 51
                  negative regulation of DNA-dependent DNA replication + 16
                  positive regulation of DNA-dependent DNA replication + 13
                  regulation of DNA endoreduplication + 4
                  regulation of DNA primase activity + 0
                  regulation of DNA replication termination + 0
                  regulation of DNA strand resection involved in replication fork processing + 1
                  regulation of DNA-dependent DNA replication initiation + 7
                  regulation of DNA-directed DNA polymerase activity + 10
                  regulation of mitochondrial DNA replication + 3
                  regulation of nuclear cell cycle DNA replication + 14
                  regulation of replication fork arrest at rDNA repeats 0
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      biosynthetic process 5967
        organic substance biosynthetic process 5872
          macromolecule biosynthetic process 4939
            cellular macromolecule biosynthetic process 4805
              DNA replication 246
                DNA-dependent DNA replication 145
                  regulation of DNA-dependent DNA replication 51
                    negative regulation of DNA-dependent DNA replication + 16
                    positive regulation of DNA-dependent DNA replication + 13
                    regulation of DNA endoreduplication + 4
                    regulation of DNA primase activity + 0
                    regulation of DNA replication termination + 0
                    regulation of DNA strand resection involved in replication fork processing + 1
                    regulation of DNA-dependent DNA replication initiation + 7
                    regulation of DNA-directed DNA polymerase activity + 10
                    regulation of mitochondrial DNA replication + 3
                    regulation of nuclear cell cycle DNA replication + 14
                    regulation of replication fork arrest at rDNA repeats 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.