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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear transcriptional repressor complex
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Accession:GO:0090568 term browser browse the term
Definition:A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription.


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chromatin silencing complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bahd1 bromo adjacent homology domain containing 1 JBrowse link 3 110,708,790 110,732,038 RGD:1624291
G Baz2a bromodomain adjacent to zinc finger domain, 2A JBrowse link 7 2,518,267 2,548,840 RGD:1624291
G Rrp8 ribosomal RNA processing 8 JBrowse link 1 170,574,670 170,578,693 RGD:1624291
RGD:13792537
RGD:1600115
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:1600115
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link X 146,532,002 146,533,538 RGD:1624291
G Suv39h1l1 suppressor of variegation 3-9 homolog 1 (Drosophila)-like 1 JBrowse link X 15,171,280 15,185,191 RGD:1600115
Cry-Per complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pasd1 PAS domain containing repressor 1 JBrowse link 16
16
70,001,708
70,011,911
70,006,009
70,027,313
RGD:1624291
DRM complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin52 lin-52 DREAM MuvB core complex component JBrowse link 6 108,167,412 108,264,459 RGD:1600115
negative cofactor 2 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dr1 down-regulator of transcription 1 JBrowse link 14 2,463,651 2,475,004 RGD:13792537
G LOC100910207 protein Dr1-like JBrowse link 14 1,621,021 1,632,432 RGD:13792537
NuRD complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd3 chromodomain helicase DNA binding protein 3 JBrowse link 10 55,943,467 55,970,417 RGD:1624291
G Chd4 chromodomain helicase DNA binding protein 4 JBrowse link 4 157,612,531 157,645,660 RGD:1624291
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:1624291
G Gatad2a GATA zinc finger domain containing 2A JBrowse link 16 21,177,793 21,267,768 RGD:1624291
RGD:13792537
G Gatad2b GATA zinc finger domain containing 2B JBrowse link 2 189,654,871 189,735,056 RGD:13792537
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:1624291
G Mta1 metastasis associated 1 JBrowse link 6 137,911,302 137,950,066 RGD:1624291
RGD:13792537
RGD:1600115
G Mta2 metastasis associated 1 family, member 2 JBrowse link 1 225,140,863 225,149,584 RGD:1624291
RGD:13792537
G Mta3 metastasis associated 1 family, member 3 JBrowse link 6 6,904,449 7,036,929 RGD:1624291
RGD:13792537
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:1624291
RGD:1600115
G Sall1 spalt-like transcription factor 1 JBrowse link 19 23,387,737 23,405,025 RGD:1624291
G Zbtb7a zinc finger and BTB domain containing 7a JBrowse link 7 11,429,266 11,446,119 RGD:1600115
RGD:1624291
RNA polymerase II transcription repressor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx20 DEAD-box helicase 20 JBrowse link 2 208,144,142 208,154,764 RGD:1624291
G Etv3 ETS variant transcription factor 3 JBrowse link 2 186,872,483 186,887,294 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:1624291
Tle3-Aes complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tbx15 T-box transcription factor 15 JBrowse link 2 201,289,042 201,390,752 RGD:1624291
RGD:13792537
G Tbx18 T-box transcription factor 18 JBrowse link 8 95,359,354 95,387,363 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19738
    cellular anatomical entity 19354
      nucleoplasm 3364
        nuclear transcriptional repressor complex 32
          Beta-catenin-ICAT complex 0
          Cry-Per complex 1
          NuRD complex 16
          RNA polymerase I transcription repressor complex 0
          RNA polymerase II transcription repressor complex + 9
          RNA polymerase III transcription repressor complex 0
          RNA polymerase IV transcription repressor complex 0
          RNA polymerase V transcription repressor complex 0
          SHREC complex 0
          SHREC2 complex 0
          chromatin silencing complex + 7
Path 2
Term Annotations click to browse term
  cellular_component 19738
    cellular anatomical entity 19354
      organelle 12457
        intracellular organelle 11936
          intracellular membrane-bounded organelle 9924
            nucleus 6747
              nuclear lumen 3991
                nucleoplasm 3364
                  nuclear transcriptional repressor complex 32
                    Beta-catenin-ICAT complex 0
                    Cry-Per complex 1
                    NuRD complex 16
                    RNA polymerase I transcription repressor complex 0
                    RNA polymerase II transcription repressor complex + 9
                    RNA polymerase III transcription repressor complex 0
                    RNA polymerase IV transcription repressor complex 0
                    RNA polymerase V transcription repressor complex 0
                    SHREC complex 0
                    SHREC2 complex 0
                    chromatin silencing complex + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.