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ONTOLOGY REPORT - ANNOTATIONS


Term:sensory organ morphogenesis
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Accession:GO:0090596 term browser browse the term
Definition:Morphogenesis of a sensory organ. A sensory organ is defined as a tissue or set of tissues that work together to receive and transmit signals from external or internal stimuli. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.


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auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 ISO MGI:MGI:4354110 (MGI:MGI:4353582|PMID:19363478) RGD PMID:19363478 MGI:MGI:4353582 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:MGI:2663662|MGI:MGI:2663669 (MGI:MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:MGI:2139764 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:MGI:2145950|MGI:MGI:4440621 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:MGI:4417931 (MGI:MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO
IEA
MGI:MGI:5558098 (MGI:MGI:5544506|PMID:24302887)
GO_REF:0000107
RGD
Ensembl
PMID:24302887 GO_REF:0000107, MGI:MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:MGI:1856799 (MGI:MGI:3709803|PMID:11875276) RGD PMID:11875276 MGI:MGI:3709803 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Cdh23 cadherin-related 23 ISO MGI:MGI:1856228|MGI:MGI:1856681|MGI:MGI:1891428|MGI:MGI:2154548|MGI:MGI:2154549 (MGI:MGI:1929001|PMID:11138008), (MGI:MGI:1933915|PMID:11322776), (MGI:MGI:3526751|PMID:15537665), (MGI:MGI:3625226|PMID:12121736), (MGI:MGI:3686545|PMID:17050716), (MGI:MGI:5468200|PMID:23217710), (MGI:MGI:75953|PMID:7610888), (MGI:MGI:81497|PMID:8790740), (MGI:MGI:86134|PMID:9039475) RGD PMID:7610888, PMID:8790740, PMID:9039475, PMID:11138008, PMID:11322776, PMID:12121736, PMID:15537665, PMID:17050716, PMID:23217710 MGI:MGI:1929001, MGI:MGI:1933915, MGI:MGI:3526751, MGI:MGI:3625226, MGI:MGI:3686545, MGI:MGI:5468200, MGI:MGI:75953, MGI:MGI:81497, MGI:MGI:86134 NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
JBrowse link
G Clic5 chloride intracellular channel 5 ISO
IBA
MGI:MGI:3663254 (MGI:MGI:3663248|PMID:17021174)
PMID:21873635
RGD PMID:17021174, PMID:21873635 MGI:MGI:3663248, RGD:13792537 NCBI chr 9:19,121,676...19,372,673
Ensembl chr 9:19,121,677...19,372,673
JBrowse link
G Clrn1 clarin 1 IEA
ISO
GO_REF:0000107
MGI:MGI:3850171 (MGI:MGI:3849925|PMID:19414487), (MGI:MGI:4353469|PMID:19423712)
Ensembl
RGD
PMID:19414487, PMID:19423712 GO_REF:0000107, MGI:MGI:3849925, MGI:MGI:4353469 NCBI chr 2:149,049,925...149,088,787
Ensembl chr 2:149,049,925...149,088,787
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 ISO MGI:MGI:2139535|MGI:MGI:6281113|MGI:MGI:6281114 (MGI:MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:MGI:6278501 NCBI chr18:36,308,925...36,334,643
Ensembl chr18:36,308,925...36,322,320
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 ISO MGI:MGI:3055797|MGI:MGI:3718054 (MGI:MGI:3578102|PMID:15905332), (MGI:MGI:3759710|PMID:17876667), (MGI:MGI:5468200|PMID:23217710) RGD PMID:15905332, PMID:17876667, PMID:23217710 MGI:MGI:3578102, MGI:MGI:3759710, MGI:MGI:5468200 NCBI chr20:5,815,837...5,826,137
Ensembl chr20:5,815,837...5,826,137
JBrowse link
G Myo3a myosin IIIA ISO MGI:MGI:2448580 (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo3b myosin IIIB ISO MGI:MGI:2183924 (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Myo7a myosin VIIA ISO MGI:MGI:1860092|MGI:MGI:2155422 (MGI:MGI:2156358|PMID:11753415), (MGI:MGI:3625226|PMID:12121736), (MGI:MGI:3686545|PMID:17050716) RGD PMID:11753415, PMID:12121736, PMID:17050716 MGI:MGI:2156358, MGI:MGI:3625226, MGI:MGI:3686545 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Pcdh15 protocadherin related 15 ISO MGI:MGI:1855958|MGI:MGI:1856394|MGI:MGI:1856396|MGI:MGI:1890219|MGI:MGI:2151877|MGI:MGI:3505691 (MGI:MGI:1928787|PMID:10978835), (MGI:MGI:3526751|PMID:15537665), (MGI:MGI:3619110|PMID:11124469), (MGI:MGI:3654702|PMID:16887306), (MGI:MGI:5468200|PMID:23217710) RGD PMID:10978835, PMID:11124469, PMID:15537665, PMID:16887306, PMID:23217710 MGI:MGI:1928787, MGI:MGI:3526751, MGI:MGI:3619110, MGI:MGI:3654702, MGI:MGI:5468200 NCBI chr20:14,952,213...15,334,745
Ensembl chr20:14,952,213...15,334,745
JBrowse link
G Pdzd7 PDZ domain containing 7 ISO
IBA
MGI:MGI:4433578 (MGI:MGI:5565635|PMID:24334608)
PMID:21873635
RGD PMID:24334608, PMID:21873635 MGI:MGI:5565635, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G Pls1 plastin 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5608770|PMID:25124451)
Ensembl
RGD
PMID:25124451 GO_REF:0000107, MGI:MGI:5608770 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
JBrowse link
G Rest RE1-silencing transcription factor ISS
ISO
GO_REF:0000024
(MGI:MGI:6193260|PMID:29961578)
UniProt
RGD
PMID:29961578 GO_REF:0000024, MGI:MGI:6193260 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 ISO (MGI:MGI:5789047|PMID:27269051) RGD PMID:27269051 MGI:MGI:5789047 NCBI chr17:42,324,594...42,549,907
Ensembl chr17:42,324,594...42,422,053
JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:MGI:2139764 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:MGI:2145950|MGI:MGI:4440621 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Slc9a3r1 SLC9A3 regulator 1 ISO MGI:MGI:3526430 (MGI:MGI:5578076|PMID:24920589) RGD PMID:24920589 MGI:MGI:5578076 NCBI chr10:103,713,045...103,730,145
Ensembl chr10:103,713,045...103,730,145
JBrowse link
G Sod1 superoxide dismutase 1 ISS
ISO
GO_REF:0000024
MGI:MGI:1857872 (MGI:MGI:1344578|PMID:10466888), (MGI:MGI:3700629|PMID:10464373)
UniProt
RGD
PMID:10464373, PMID:10466888 GO_REF:0000024, MGI:MGI:1344578, MGI:MGI:3700629 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
JBrowse link
G Strc stereocilin ISO MGI:MGI:3818633 (MGI:MGI:3818235|PMID:18849963), (MGI:MGI:5430850|PMID:21165971) RGD PMID:18849963, PMID:21165971 MGI:MGI:3818235, MGI:MGI:5430850 NCBI chr 3:113,324,403...113,343,513
Ensembl chr 3:113,324,698...113,342,675
JBrowse link
G Tprn taperin ISO MGI:MGI:2685697 (MGI:MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:MGI:6278501 NCBI chr 3:2,480,232...2,487,710
Ensembl chr 3:2,480,232...2,487,710
JBrowse link
G Triobp TRIO and F-actin binding protein ISO MGI:MGI:4881773 (MGI:MGI:4881391|PMID:20510926) RGD PMID:20510926 MGI:MGI:4881391 NCBI chr 7:120,173,892...120,237,145
Ensembl chr 7:120,176,530...120,230,420
JBrowse link
G Whrn whirlin ISO
IBA
IEA
MGI:MGI:4432119 (MGI:MGI:5796227|PMID:27117407)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:27117407, PMID:21873635 GO_REF:0000107, MGI:MGI:5796227, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 ISO MGI:MGI:1857807 (MGI:MGI:2180433|PMID:11891232) RGD PMID:11891232 MGI:MGI:2180433 NCBI chr 4:85,551,503...85,563,683
Ensembl chr 4:85,551,502...85,569,360
JBrowse link
G Aqp5 aquaporin 5 ISO MGI:MGI:2150059 (MGI:MGI:2180433|PMID:11891232) RGD PMID:11891232 MGI:MGI:2180433 NCBI chr 7:141,249,044...141,252,576
Ensembl chr 7:141,249,044...141,252,578
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI:MGI:88180 (MGI:MGI:1095762|PMID:9268572) RGD PMID:9268572 MGI:MGI:1095762 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO MGI:MGI:1857654|MGI:MGI:2136986 (MGI:MGI:3610441|PMID:16154126), (MGI:MGI:3701027|PMID:16854970) RGD PMID:16154126, PMID:16854970 MGI:MGI:3610441, MGI:MGI:3701027 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Col8a1 collagen type VIII alpha 1 chain ISO MGI:MGI:88464 (MGI:MGI:3587134|PMID:16051690) RGD PMID:16051690 MGI:MGI:3587134 NCBI chr11:44,877,690...45,006,203
Ensembl chr11:44,877,859...45,007,891
JBrowse link
G Col8a2 collagen type VIII alpha 2 chain ISO MGI:MGI:88463 (MGI:MGI:3587134|PMID:16051690) RGD PMID:16051690 MGI:MGI:3587134 NCBI chr 5:144,308,527...144,335,142
Ensembl chr 5:144,308,611...144,335,172
JBrowse link
G Ephb1 Eph receptor B1 ISO MGI:MGI:2677305 (MGI:MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:MGI:2675767 NCBI chr 8:110,376,954...110,813,193
Ensembl chr 8:110,376,954...110,813,000
JBrowse link
G Ephb2 Eph receptor B2 ISO MGI:MGI:2149765 (MGI:MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:MGI:2675767 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Fat1 FAT atypical cadherin 1 ISO MGI:MGI:2662293 (MGI:MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:MGI:5766588 NCBI chr16:50,372,150...50,501,716
Ensembl chr16:50,372,128...50,501,921
JBrowse link
G Gdf11 growth differentiation factor 11 ISO MGI:MGI:2449673 (MGI:MGI:3581514|PMID:15976303) RGD PMID:15976303 MGI:MGI:3581514 NCBI chr 7:3,306,863...3,315,856
Ensembl chr 7:3,306,863...3,315,856
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856276 (MGI:MGI:52587|PMID:8387379) RGD PMID:8387379 MGI:MGI:52587 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Grcc10 gene rich cluster, C10 gene ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665, PMID:23633300, PMID:24798461 NCBI chr 4:157,264,383...157,266,042
Ensembl chr 4:157,264,383...157,266,018
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO MGI:MGI:103223 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:MGI:3827087 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Mfn2 mitofusin 2 ISO MGI:MGI:1861626 (MGI:MGI:3589043|PMID:16104381) RGD PMID:16104381 MGI:MGI:3589043 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3605480 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Nf1 neurofibromin 1 ISO
ISS
IEA
MGI:MGI:1857444 (MGI:MGI:66069|PMID:7926784)
GO_REF:0000024
GO_REF:0000107
RGD
HGNC
Ensembl
PMID:7926784 GO_REF:0000024, GO_REF:0000107, MGI:MGI:66069 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Ring1 ring finger protein 1 ISO MGI:MGI:99150 (MGI:MGI:3628673|PMID:16624538) RGD PMID:16624538 MGI:MGI:3628673 NCBI chr20:3,812,287...3,815,834
Ensembl chr20:3,812,287...3,815,834
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:MGI:3693412 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Tenm3 teneurin transmembrane protein 3 ISO (PMID:22766609) RGD PMID:22766609 NCBI chr16:46,422,676...46,929,023
Ensembl chr16:46,731,403...46,926,245
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931048|MGI:MGI:2387296 (MGI:MGI:3607459|PMID:16251428) RGD PMID:16251428 MGI:MGI:3607459 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:106918|MGI:MGI:2136645 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
G Yy1 YY1 transcription factor ISO MGI:MGI:1101770 (MGI:MGI:3628673|PMID:16624538) RGD PMID:16624538 MGI:MGI:3628673 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Prom1 prominin 1 ISO
IBA
(PMID:18654668)
PMID:21873635
(MGI:MGI:3838023|PMID:19228982)
RGD PMID:18654668, PMID:19228982, PMID:21873635 MGI:MGI:3838023, RGD:13792537 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:MGI:5693671 NCBI chr10:102,299,593...102,576,554
Ensembl chr10:102,303,028...102,576,878
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO GO:0060219 (MGI:MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO MGI:MGI:5140723 (MGI:MGI:5014119|PMID:21646512) RGD PMID:21646512 MGI:MGI:5014119 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO
ISS
(MGI:MGI:3703484|PMID:17064680) RGD PMID:17064680, PMID:17064680 MGI:MGI:3703484, RGD:10047226 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO
IEA
MGI:MGI:3692444 (MGI:MGI:5492288|PMID:23676271)
GO_REF:0000107
RGD
Ensembl
PMID:23676271 GO_REF:0000107, MGI:MGI:5492288 NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
JBrowse link
G Notch2 notch receptor 2 ISO
IEA
MGI:MGI:3617328 (MGI:MGI:5492288|PMID:23676271)
GO_REF:0000107
RGD
Ensembl
PMID:23676271 GO_REF:0000107, MGI:MGI:5492288 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO
IEA
(MGI:MGI:5285004|PMID:21856951)
GO_REF:0000107
RGD
Ensembl
PMID:21856951 GO_REF:0000107, MGI:MGI:5285004 NCBI chr 1:163,317,281...163,328,697
Ensembl chr 1:163,317,282...163,328,591
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:2136645 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:MGI:3719969 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 ISO MGI:MGI:1915838 (MGI:MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:MGI:3814781 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:MGI:106613 (MGI:MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:MGI:3589836 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:MGI:108100|MGI:MGI:94941 (MGI:MGI:3589836|PMID:16116426), (MGI:MGI:3821448|PMID:19008950) RGD PMID:16116426, PMID:19008950 MGI:MGI:3589836, MGI:MGI:3821448 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO MGI:MGI:106613|MGI:MGI:2135272 (MGI:MGI:3821448|PMID:19008950) RGD PMID:19008950 MGI:MGI:3821448 NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:1857803 (MGI:MGI:1335261|PMID:10072433) RGD PMID:10072433 MGI:MGI:1335261 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Frzb frizzled-related protein ISO MGI:MGI:98958 (MGI:MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:MGI:3714704 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
JBrowse link
G Fzd2 frizzled class receptor 2 ISO
IEA
MGI:MGI:2135272 (MGI:MGI:4837757|PMID:20940229)
GO_REF:0000107
RGD
Ensembl
PMID:20940229 GO_REF:0000107, MGI:MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1857509 (MGI:MGI:3709667|PMID:17395647) RGD PMID:17395647 MGI:MGI:3709667 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:MGI:2135272 (MGI:MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:MGI:4819429 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hpn hepsin ISO
ISS
(MGI:MGI:5306554|PMID:20683358)
GO_REF:0000024
RGD
UniProt
PMID:20683358 GO_REF:0000024, MGI:MGI:5306554 NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967
JBrowse link
G Myo3a myosin IIIA ISO (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018
JBrowse link
G Myo3b myosin IIIB ISO (MGI:MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547
JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Pax2 paired box 2 ISS
ISO
GO_REF:0000024
MGI:MGI:1857673|UniProtKB:Q00288 (MGI:MGI:3702803|PMID:16916509), (MGI:MGI:4822275|PMID:20727173), (MGI:MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055, PMID:16916509, PMID:20727173 GO_REF:0000024, MGI:MGI:3702803, MGI:MGI:4822275, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pou3f4 POU class 3 homeobox 4 ISO
ISS
UniProtKB:P70323 (MGI:MGI:5284768|PMID:18231833)
GO_REF:0000024
RGD
UniProt
PMID:18231833 GO_REF:0000024, MGI:MGI:5284768 NCBI chr  X:82,143,789...82,145,066
Ensembl chr  X:82,143,789...82,145,066
JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO MGI:MGI:3640803 (MGI:MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:MGI:2663662|MGI:MGI:2663669 (MGI:MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:MGI:2655195 (MGI:MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:2385468|MGI:MGI:3841145 (MGI:MGI:4454502|PMID:20346939)
GO_REF:0000024
RGD
UniProt
PMID:20346939 GO_REF:0000024, MGI:MGI:4454502 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:MGI:2179136|UniProtKB:P62515 (MGI:MGI:3765363|PMID:17825816), (MGI:MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:17825816, PMID:18231833 GO_REF:0000024, MGI:MGI:3765363, MGI:MGI:5284768 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbx18 T-box transcription factor 18 ISO MGI:MGI:3044915 (MGI:MGI:3788971|PMID:18353863) RGD PMID:18353863 MGI:MGI:3788971 NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
G Tshr thyroid stimulating hormone receptor IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:115,170,290...115,306,871
Ensembl chr 6:115,170,865...115,306,871
JBrowse link
G Tshr-ps1 thyroid stimulating hormone receptor, pseudogene 1 ISO (MGI:MGI:3652455|PMID:10575115) RGD PMID:10575115 MGI:MGI:3652455 NCBI chr 4:93,447,412...93,448,194 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:108100|MGI:MGI:1857642|MGI:MGI:1888513|MGI:MGI:2655333|MGI:MGI:98958 (MGI:MGI:3589836|PMID:16116426), (MGI:MGI:3714704|PMID:17433286), (MGI:MGI:3814781|PMID:18606138), (MGI:MGI:3821448|PMID:19008950), (MGI:MGI:4819429|PMID:20643356), (MGI:MGI:4837757|PMID:20940229) RGD PMID:16116426, PMID:17433286, PMID:18606138, PMID:19008950, PMID:20643356, PMID:20940229 MGI:MGI:3589836, MGI:MGI:3714704, MGI:MGI:3814781, MGI:MGI:3821448, MGI:MGI:4819429, MGI:MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1857617|MGI:MGI:2135272 (MGI:MGI:3714704|PMID:17433286)
GO_REF:0000107
RGD
Ensembl
PMID:17433286 GO_REF:0000107, MGI:MGI:3714704 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO
IEA
MGI:MGI:1861230 (MGI:MGI:5294688|PMID:21980308)
GO_REF:0000107
RGD
Ensembl
PMID:21980308 GO_REF:0000107, MGI:MGI:5294688 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:MGI:1862038 (MGI:MGI:1861752|PMID:10932191) RGD PMID:10932191 MGI:MGI:1861752 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Gjb6 gap junction protein, beta 6 ISO MGI:MGI:2447863 (MGI:MGI:2447513|PMID:12490528) RGD PMID:12490528 MGI:MGI:2447513 NCBI chr15:37,400,888...37,411,656
Ensembl chr15:37,400,889...37,410,848
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
MGI:MGI:2179191 (MGI:MGI:3050165|PMID:15190012)
GO_REF:0000024
RGD
UniProt
PMID:15190012 GO_REF:0000024, MGI:MGI:3050165 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:MGI:5315747 (MGI:MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 ISO MGI:MGI:1857654 (MGI:MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:MGI:1332362 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:97490 (MGI:MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:3777403 (MGI:MGI:3775669|PMID:18056999) RGD PMID:18056999 MGI:MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Foxf2 forkhead box F2 ISO (MGI:MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:MGI:5297296 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Fzd5 frizzled class receptor 5 ISO
IEA
(MGI:MGI:3826935|PMID:18832390)
GO_REF:0000107
RGD
Ensembl
PMID:18832390 GO_REF:0000107, MGI:MGI:3826935 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:MGI:3578529 (MGI:MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:MGI:6094959 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:MGI:2682066 (MGI:MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:MGI:6094959 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:2156191|MGI:MGI:4415718 (MGI:MGI:3823171|PMID:18985738), (MGI:MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:18985738, PMID:19653321, PMID:21873635 MGI:MGI:3823171, MGI:MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1306784 (MGI:MGI:3807101|PMID:18653562)
GO_REF:0000107
RGD
Ensembl
PMID:18653562 GO_REF:0000107, MGI:MGI:3807101 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:MGI:1277166 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:MGI:98372 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2176682 (MGI:MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Th tyrosine hydroxylase ISO (MGI:MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:MGI:3617102 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO
IEA
MGI:MGI:1857515 (MGI:MGI:3790562|PMID:18436818)
GO_REF:0000107
RGD
Ensembl
PMID:18436818 GO_REF:0000107, MGI:MGI:3790562 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO MGI:MGI:1861722 (MGI:MGI:3608158|PMID:16207763), (MGI:MGI:3624188|PMID:16611695) RGD PMID:16207763, PMID:16611695 MGI:MGI:3608158, MGI:MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO MGI:MGI:1353450|MGI:MGI:3043947 (MGI:MGI:3608158|PMID:16207763), (MGI:MGI:3624188|PMID:16611695) RGD PMID:16207763, PMID:16611695 MGI:MGI:3608158, MGI:MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IEA
ISO
GO_REF:0000107
(PMID:25406291)
Ensembl
RGD
PMID:25406291 GO_REF:0000107 NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014
JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
JBrowse link
G Fbn2 fibrillin 2 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Foxl2 forkhead box L2 ISO MGI:MGI:3044226 (MGI:MGI:3043431|PMID:15056605) RGD PMID:15056605 MGI:MGI:3043431 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
G Mfap2 microfibril associated protein 2 ISO
IBA
(PMID:25406291)
PMID:21873635
RGD PMID:25406291, PMID:21873635 RGD:13792537 NCBI chr 5:159,534,202...159,539,750
Ensembl chr 5:159,534,202...159,539,750
JBrowse link
G Mfap5 microfibril associated protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,313,671...155,336,228
Ensembl chr 4:155,313,671...155,336,228
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:MGI:97858 (MGI:MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:MGI:3608158 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:97857 (MGI:MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:MGI:3608158 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Vax2 ventral anterior homeobox 2 IEA
ISO
GO_REF:0000107
MGI:MGI:2159246 (MGI:MGI:1349226|PMID:10595508), (MGI:MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:10595508, PMID:11830579 GO_REF:0000107, MGI:MGI:1349226, MGI:MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated ISO
IEA
MGI:MGI:2653120 (MGI:MGI:4422144|PMID:19754878)
GO_REF:0000107
RGD
Ensembl
PMID:19754878 GO_REF:0000107, MGI:MGI:4422144 NCBI chr 8:36,625,757...36,712,091
Ensembl chr 8:36,625,733...36,710,949
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
(MGI:MGI:3772525|PMID:18094249)
GO_REF:0000024
RGD
UniProt
PMID:18094249 GO_REF:0000024, MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:4415718 (MGI:MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:19653321, PMID:21873635 MGI:MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:12692551) RGD PMID:12692551 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:MGI:1344892|PMID:10469643) RGD PMID:10469643 MGI:MGI:1344892 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 ISO MGI:MGI:2662293 (MGI:MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:MGI:5766588 NCBI chr16:50,372,150...50,501,716
Ensembl chr16:50,372,128...50,501,921
JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:16431952)
Ensembl
RGD
PMID:16431952 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:MGI:2388397 (MGI:MGI:2138055|PMID:11456441) RGD PMID:11456441 MGI:MGI:2138055 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:22940085 RGD:10043154 NCBI chr 5:2,257,910...2,497,429 JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO MGI:MGI:2676366 (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:4849309|PMID:21052544) RGD PMID:12915475, PMID:21052544 MGI:MGI:2675211, MGI:MGI:4849309 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal ISO MGI:MGI:3612338 (MGI:MGI:3610644|PMID:16043865) RGD PMID:16043865 MGI:MGI:3610644 NCBI chr10:109,528,307...109,540,675
Ensembl chr10:109,533,487...109,540,026
JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT ISO MGI:MGI:2446461 (MGI:MGI:2179933|PMID:12019334) RGD PMID:12019334 MGI:MGI:2179933 NCBI chr 5:48,303,366...48,341,571
Ensembl chr 5:48,303,366...48,341,642
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO MGI:MGI:2152779 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO MGI:MGI:3783323 (MGI:MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:MGI:3778702 NCBI chr 4:28,972,339...28,975,419
Ensembl chr 4:28,972,434...28,975,419
JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:48,437,720...48,443,421
Ensembl chr 8:48,437,918...48,443,421
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:64,797,518...64,801,587
Ensembl chr 8:64,797,518...64,800,467
JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:217,779,983...218,005,710
Ensembl chr 2:217,963,456...218,005,509
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856158 (MGI:MGI:2654287|PMID:12648492)
GO_REF:0000107
RGD
Ensembl
PMID:12648492 GO_REF:0000107, MGI:MGI:2654287 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO MGI:MGI:2670574 (MGI:MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:MGI:5607451 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Prdm1 PR/SET domain 1 ISO MGI:MGI:3605621|MGI:MGI:3608904|MGI:MGI:4881674 (MGI:MGI:4454584|PMID:20463215) RGD PMID:20463215 MGI:MGI:4454584 NCBI chr20:49,464,921...49,556,623
Ensembl chr20:49,464,919...49,556,518
JBrowse link
G Prkci protein kinase C, iota ISO MGI:MGI:3526850|MGI:MGI:3608904 (MGI:MGI:3607414|PMID:16267237) RGD PMID:16267237 MGI:MGI:3607414 NCBI chr 2:115,941,998...116,002,550
Ensembl chr 2:115,941,993...116,002,561
JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:10,277,775...10,286,243
Ensembl chr16:10,277,775...10,286,243
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO MGI:MGI:5467544 (MGI:MGI:5462166|PMID:22605914) RGD PMID:22605914 MGI:MGI:5462166 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rorb RAR-related orphan receptor B ISO
ISS
(MGI:MGI:3652638|PMID:16574740)
GO_REF:0000024
RGD
UniProt
PMID:16574740 GO_REF:0000024, MGI:MGI:3652638 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO MGI:MGI:2386674 (MGI:MGI:2654998|PMID:12651948) RGD PMID:12651948 MGI:MGI:2654998 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO MGI:MGI:2655714 (MGI:MGI:2654998|PMID:12651948) RGD PMID:12651948 MGI:MGI:2654998 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Th tyrosine hydroxylase ISO (MGI:MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:MGI:3617102 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:MGI:4397555 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931048|MGI:MGI:2387296 (MGI:MGI:3607459|PMID:16251428) RGD PMID:16251428 MGI:MGI:3607459 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,510,009...5,614,416
Ensembl chr17:5,511,385...5,614,435
JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha ISO UniProtKB:F6T226 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:109,481,352...109,621,462
Ensembl chr 8:109,482,614...109,621,408
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO
ISS
(MGI:MGI:3045481|PMID:15207851)
GO_REF:0000024
RGD
UniProt
PMID:15207851 GO_REF:0000024, MGI:MGI:3045481 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:2178753 (MGI:MGI:2680889|PMID:14625556) RGD PMID:14625556 MGI:MGI:2680889 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
fungiform papilla formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO
IEA
(MGI:MGI:3696593|PMID:17128274)
GO_REF:0000107
RGD
Ensembl
PMID:17128274 GO_REF:0000107, MGI:MGI:3696593 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Hdac1 histone deacetylase 1 ISO UniProtKB:P70288 (MGI:MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:MGI:4889029 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac2 histone deacetylase 2 ISO UniProtKB:O09106 (MGI:MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:MGI:4889029 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
fungiform papilla morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Six1 SIX homeobox 1 ISO (MGI:MGI:5448822|PMID:21978088) RGD PMID:21978088 MGI:MGI:5448822 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six4 SIX homeobox 4 ISO (MGI:MGI:5448822|PMID:21978088) RGD PMID:21978088 MGI:MGI:5448822 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 ISO (MGI:MGI:3772525|PMID:18094249) RGD PMID:18094249 MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase ISO
IEA
MGI:MGI:88141 (MGI:MGI:3622851|PMID:11921339)
GO_REF:0000107
RGD
Ensembl
PMID:11921339 GO_REF:0000107, MGI:MGI:3622851 NCBI chr10:64,565,121...64,657,079
Ensembl chr10:64,567,268...64,657,089
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO
IEA
MGI:MGI:3043947 (MGI:MGI:5488831|PMID:23536097)
GO_REF:0000107
RGD
Ensembl
PMID:23536097 GO_REF:0000107, MGI:MGI:5488831 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Atoh1 atonal bHLH transcription factor 1 ISO MGI:MGI:2155983|MGI:MGI:2155984 (MGI:MGI:3525036|PMID:15543141), (MGI:MGI:3607238|PMID:16145671) RGD PMID:15543141, PMID:16145671 MGI:MGI:3525036, MGI:MGI:3607238 NCBI chr 4:95,498,003...95,500,098
Ensembl chr 4:95,498,003...95,500,089
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:MGI:1857876 (MGI:MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:MGI:1275896 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 NOT ISO
ISS
(PMID:19639346)
GO_REF:0000024
(MGI:MGI:2669353|PMID:12782355)
RGD
UniProt
PMID:12782355, PMID:19639346 GO_REF:0000024, MGI:MGI:2669353 NCBI chr 4:115,417,100...115,435,754
Ensembl chr 4:115,416,580...115,437,206
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
JBrowse link
G Bcr BCR activator of RhoGEF and GTPase ISO MGI:MGI:107771 (MGI:MGI:3622851|PMID:11921339) RGD PMID:11921339 MGI:MGI:3622851 NCBI chr20:14,421,250...14,546,406
Ensembl chr20:14,421,141...14,545,772
JBrowse link
G Cdh23 cadherin-related 23 ISO MGI:MGI:1856229|MGI:MGI:1856681|MGI:MGI:2665714 (MGI:MGI:3579755|PMID:15925194), (MGI:MGI:75953|PMID:7610888) RGD PMID:7610888, PMID:15925194 MGI:MGI:3579755, MGI:MGI:61210, MGI:MGI:75953 NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111
JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 ISO MGI:MGI:1862019|MGI:MGI:2668337 (MGI:MGI:2667273|PMID:12842012) RGD PMID:12842012 MGI:MGI:2667273 NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO (PMID:15300250)
MGI:MGI:3511552 (MGI:MGI:3056111|PMID:15353999)
RGD PMID:15300250, PMID:15353999 MGI:MGI:3056111 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit ISO MGI:MGI:3774038 (MGI:MGI:3771935|PMID:18077337) RGD PMID:18077337 MGI:MGI:3771935 NCBI chr 1:167,206,722...167,212,199
Ensembl chr 1:167,206,722...167,210,919
JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit ISO MGI:MGI:2158742 (MGI:MGI:3771935|PMID:18077337) RGD PMID:18077337 MGI:MGI:3771935 NCBI chr14:43,883,450...43,890,171
Ensembl chr14:43,883,458...43,890,171
JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:MGI:1856399 (MGI:MGI:49531|PMID:1952599) RGD PMID:1952599 MGI:MGI:49531 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO
IEA
MGI:MGI:1857275 (MGI:MGI:892501|PMID:9165353)
GO_REF:0000107
RGD
Ensembl
PMID:9165353 GO_REF:0000107, MGI:MGI:892501 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Dlx5 distal-less homeobox 5 IEA
ISO
GO_REF:0000107
MGI:MGI:101927|MGI:MGI:2180474 (MGI:MGI:2384365|PMID:12142028), (MGI:MGI:3689133|PMID:16900517)
Ensembl
RGD
PMID:12142028, PMID:16900517 GO_REF:0000107, MGI:MGI:2384365, MGI:MGI:3689133 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Dlx6 distal-less homeobox 6 ISO MGI:MGI:101926 (MGI:MGI:3689133|PMID:16900517) RGD PMID:16900517 MGI:MGI:3689133 NCBI chr 4:32,373,096...32,377,388
Ensembl chr 4:32,373,641...32,377,253
JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:12,382,636...12,393,266
Ensembl chr 7:12,382,636...12,393,266
JBrowse link
G Ephb2 Eph receptor B2 ISO (MGI:MGI:1859095|PMID:10839360) RGD PMID:10839360 MGI:MGI:1859095 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:1857803|MGI:MGI:2150426|MGI:MGI:97486 (MGI:MGI:1344210|PMID:10471511), (MGI:MGI:3577160|PMID:15817220), (MGI:MGI:3702803|PMID:16916509) RGD PMID:10471511, PMID:15817220, PMID:16916509 MGI:MGI:1344210, MGI:MGI:3577160, MGI:MGI:3702803 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:1347464|MGI:MGI:1859647 (MGI:MGI:3654570|PMID:16691564), (MGI:MGI:3688470|PMID:11062007) RGD PMID:11062007, PMID:16691564 MGI:MGI:3654570, MGI:MGI:3688470 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:1345138 (MGI:MGI:3577817|PMID:15809037) RGD PMID:15809037 MGI:MGI:3577817 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO MGI:MGI:2135961 (MGI:MGI:3056034|PMID:15328018) RGD PMID:15328018 MGI:MGI:3056034 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO
IEA
MGI:MGI:2153351 (MGI:MGI:2386422|PMID:12194867)
GO_REF:0000107
RGD
Ensembl
PMID:12194867 GO_REF:0000107, MGI:MGI:2386422 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2153811 (MGI:MGI:2153190|PMID:10934262) RGD PMID:10934262 MGI:MGI:2153190 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Foxg1 forkhead box G1 ISO MGI:MGI:1099809|MGI:MGI:2388671 (MGI:MGI:3654570|PMID:16691564) RGD PMID:16691564 MGI:MGI:3654570 NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037
JBrowse link
G Foxi1 forkhead box I1 ISO MGI:MGI:2448634 (MGI:MGI:2652196|PMID:12642503) RGD PMID:12642503 MGI:MGI:2652196 NCBI chr10:19,160,566...19,164,505
Ensembl chr10:19,160,582...19,164,505
JBrowse link
G Frzb frizzled-related protein ISO MGI:MGI:98958 (MGI:MGI:3823145|PMID:18991062) RGD PMID:18991062 MGI:MGI:3823145 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772
JBrowse link
G Fzd3 frizzled class receptor 3 ISO MGI:MGI:108474 (MGI:MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:MGI:3616416 NCBI chr15:48,601,259...48,670,257
Ensembl chr15:48,601,266...48,670,257
JBrowse link
G Fzd6 frizzled class receptor 6 ISO MGI:MGI:108476 (MGI:MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:MGI:3616416 NCBI chr 7:77,898,329...77,931,034
Ensembl chr 7:77,899,322...77,931,029
JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:MGI:4818492 (MGI:MGI:4821520|PMID:20652952) RGD PMID:20652952 MGI:MGI:4821520 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Gata3 GATA binding protein 3 ISO MGI:MGI:2153826|MGI:MGI:2181200 (MGI:MGI:1928163|PMID:11135239), (MGI:MGI:5013488|PMID:21553382) RGD PMID:11135239, PMID:21553382 MGI:MGI:1928163, MGI:MGI:5013488 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:MGI:1857634 (MGI:MGI:3578572|PMID:15829521), (MGI:MGI:3588904|PMID:15996652) RGD PMID:15829521, PMID:15996652 MGI:MGI:3578572, MGI:MGI:3588904 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor ISO MGI:MGI:2449921 (MGI:MGI:2429425|PMID:12441305) RGD PMID:12441305 MGI:MGI:2429425 NCBI chr14:3,058,035...3,073,332
Ensembl chr14:3,058,993...3,068,371
JBrowse link
G Hmx2 H6 family homeobox 2 ISO MGI:MGI:107160|MGI:MGI:2154542 (MGI:MGI:2154463|PMID:11748138), (MGI:MGI:3055237|PMID:15363417) RGD PMID:11748138, PMID:15363417 MGI:MGI:2154463, MGI:MGI:3055237 NCBI chr 1:203,515,605...203,523,266
Ensembl chr 1:203,515,609...203,523,358
JBrowse link
G Hmx3 H6 family homeobox 3 ISO MGI:MGI:107159|MGI:MGI:1857577 (MGI:MGI:1197796|PMID:9435283), (MGI:MGI:3055237|PMID:15363417) RGD PMID:9435283, PMID:15363417 MGI:MGI:1197796, MGI:MGI:3055237 NCBI chr 1:203,509,731...203,511,695
Ensembl chr 1:203,509,731...203,511,695
JBrowse link
G Hoxa1 homeobox A1 ISO MGI:MGI:3056069 (MGI:MGI:3055618|PMID:15367676) RGD PMID:15367676 MGI:MGI:3055618 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Insig1 insulin induced gene 1 ISO MGI:MGI:1920249 (MGI:MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:MGI:3689278 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515
JBrowse link
G Insig2 insulin induced gene 2 ISO MGI:MGI:1916289 (MGI:MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:MGI:3689278 NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458
JBrowse link
G Itga8 integrin subunit alpha 8 ISO MGI:MGI:2181699 (MGI:MGI:1355040|PMID:10742111) RGD PMID:10742111 MGI:MGI:1355040 NCBI chr17:79,321,893...79,676,927
Ensembl chr17:79,321,900...79,676,499
JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 ISO
IEA
MGI:MGI:3618993 (MGI:MGI:3617033|PMID:16437162)
GO_REF:0000107
RGD
Ensembl
PMID:16437162 GO_REF:0000107, MGI:MGI:3617033 NCBI chr 5:139,625,783...139,677,300
Ensembl chr 5:139,627,576...139,677,300
JBrowse link
G Mafb MAF bZIP transcription factor B ISO MGI:MGI:1856419 (MGI:MGI:3611672|PMID:16325169) RGD PMID:16325169 MGI:MGI:3611672 NCBI chr 3:156,338,993...156,340,913
Ensembl chr 3:156,339,004...156,340,913
JBrowse link
G Myo15a myosin XVA ISO MGI:MGI:1857036 (MGI:MGI:3041655|PMID:14724386), (MGI:MGI:3054106|PMID:11718241) RGD PMID:11718241, PMID:14724386 MGI:MGI:3041655, MGI:MGI:3054106 NCBI chr10:46,840,098...46,897,362
Ensembl chr10:46,840,113...46,896,054
JBrowse link
G Myo6 myosin VI ISO
IBA
MGI:MGI:1856555 (MGI:MGI:77423|PMID:7493015)
PMID:21873635
RGD PMID:7493015, PMID:21873635 MGI:MGI:77423, RGD:13792537 NCBI chr 8:87,583,649...87,731,271
Ensembl chr 8:87,630,916...87,731,269
JBrowse link
G Myo7a myosin VIIA ISO MGI:MGI:1856716|MGI:MGI:1860092|MGI:MGI:2155422|MGI:MGI:3511858 (MGI:MGI:2156358|PMID:11753415), (MGI:MGI:3510503|PMID:15389316), (MGI:MGI:53596|PMID:5795329) RGD PMID:5795329, PMID:11753415, PMID:15389316 MGI:MGI:2156358, MGI:MGI:3510503, MGI:MGI:53596 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Neurog1 neurogenin 1 ISO MGI:MGI:2183171 (MGI:MGI:3607238|PMID:16145671)
UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
RGD PMID:16145671, PMID:23419067 MGI:MGI:3607238 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 ISO MGI:MGI:3037444 (MGI:MGI:2157256|PMID:11784868) RGD PMID:11784868 MGI:MGI:2157256 NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637
JBrowse link
G Ntn1 netrin 1 ISO
IEA
MGI:MGI:2137018 (MGI:MGI:3718276|PMID:17616930)
GO_REF:0000107
RGD
Ensembl
PMID:17616930 GO_REF:0000107, MGI:MGI:3718276 NCBI chr10:54,761,925...54,982,072
Ensembl chr10:54,761,871...54,967,585
JBrowse link
G Otop1 otopetrin 1 ISO MGI:MGI:1856638|MGI:MGI:2655558 (MGI:MGI:2654297|PMID:12651873) RGD PMID:12651873 MGI:MGI:2654297 NCBI chr14:77,236,278...77,263,729
Ensembl chr14:77,236,278...77,263,729
JBrowse link
G Otx1 orthodenticle homeobox 1 ISO
IEA
MGI:MGI:2136272|MGI:MGI:97451 (MGI:MGI:1335816|PMID:10225993)
GO_REF:0000107
RGD
Ensembl
PMID:10225993 GO_REF:0000107, MGI:MGI:1335816 NCBI chr14:106,861,556...106,864,933
Ensembl chr14:106,861,676...106,864,892
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:97450 (MGI:MGI:1335816|PMID:10225993) RGD PMID:10225993 MGI:MGI:1335816 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Pax2 paired box 2 ISS
ISO
GO_REF:0000024
MGI:MGI:109344|MGI:MGI:1857673|UniProtKB:Q00288 (MGI:MGI:3052393|PMID:15242798), (MGI:MGI:3702803|PMID:16916509), (MGI:MGI:4822275|PMID:20727173), (MGI:MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055, PMID:15242798, PMID:16916509, PMID:20727173 GO_REF:0000024, MGI:MGI:3052393, MGI:MGI:3702803, MGI:MGI:4822275, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pax8 paired box 8 ISO UniProtKB:P32114 (MGI:MGI:4822275|PMID:20727173) RGD PMID:20727173 MGI:MGI:4822275 NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946
JBrowse link
G Pou4f3 POU class 4 homeobox 3 ISO MGI:MGI:1857425 (MGI:MGI:2451279|PMID:12585968) RGD PMID:12585968 MGI:MGI:2451279 NCBI chr18:36,713,869...36,716,461
Ensembl chr18:36,713,869...36,716,461
JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:MGI:98218 (MGI:MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:MGI:1306737 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546
JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:MGI:97712 (MGI:MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051
JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q ISO MGI:MGI:2679316 (MGI:MGI:2677560|PMID:14534255) RGD PMID:14534255 MGI:MGI:2677560 NCBI chr 7:49,763,657...50,034,932
Ensembl chr 7:49,763,657...50,034,932
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 ISO MGI:MGI:2183225 (MGI:MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:MGI:3814781 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:MGI:106034 (MGI:MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:MGI:3578604 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six4 SIX homeobox 4 ISO MGI:MGI:102780 (MGI:MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:MGI:3578604 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:MGI:4417931 (MGI:MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Sobp sine oculis binding protein homolog ISO MGI:MGI:1856614 (MGI:MGI:3664354|PMID:16962269) RGD PMID:16962269 MGI:MGI:3664354 NCBI chr20:47,731,713...47,910,466
Ensembl chr20:47,750,762...47,910,375
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:2447995 (MGI:MGI:3578496|PMID:15846349) RGD PMID:15846349 MGI:MGI:3578496 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 ISO MGI:MGI:3578633|MGI:MGI:99604 (MGI:MGI:3577817|PMID:15809037) RGD PMID:15809037 MGI:MGI:3577817 NCBI chr15:90,172,769...90,177,823
Ensembl chr15:90,172,975...90,175,802
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:MGI:2179136|MGI:MGI:2179190|MGI:MGI:2179191|MGI:MGI:3046196|MGI:MGI:3619149 (MGI:MGI:2671642|PMID:12913075), (MGI:MGI:3039048|PMID:15084464), (MGI:MGI:3530686|PMID:15652707), (MGI:MGI:3629255|PMID:16600992)
UniProt
RGD
PMID:12913075, PMID:15084464, PMID:15652707, PMID:16600992 GO_REF:0000024, MGI:MGI:2671642, MGI:MGI:3039048, MGI:MGI:3530686, MGI:MGI:3629255 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
IEA
ISS
(PMID:21204207)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21204207 GO_REF:0000024, GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
G Tmie transmembrane inner ear ISO
IBA
MGI:MGI:1857053 (MGI:MGI:2183496|PMID:12140191)
PMID:21873635
RGD PMID:12140191, PMID:21873635 MGI:MGI:2183496, RGD:13792537 NCBI chr 8:119,142,116...119,157,071
Ensembl chr 8:119,142,434...119,157,071
JBrowse link
G Ush1c USH1 protein network component harmonin ISO
IBA
MGI:MGI:2651858|MGI:MGI:2651859 (MGI:MGI:2675093|PMID:14519688)
PMID:21873635
RGD PMID:14519688, PMID:21873635 MGI:MGI:2675093, RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
G Ush1g USH1 protein network component sans ISO MGI:MGI:2450561 (MGI:MGI:2450572|PMID:12588793), (MGI:MGI:49706|PMID:1927362) RGD PMID:1927362, PMID:12588793 MGI:MGI:2450572, MGI:MGI:49706 NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:MGI:98956 (MGI:MGI:3582112|PMID:15961523) RGD PMID:15961523 MGI:MGI:3582112 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:98953 (MGI:MGI:3582112|PMID:15961523) RGD PMID:15961523 MGI:MGI:3582112 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:MGI:3823145|PMID:18991062) RGD PMID:18991062 MGI:MGI:3823145 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO
ISS
(MGI:MGI:3703484|PMID:17064680) RGD PMID:17064680, PMID:17064680 MGI:MGI:3703484, RGD:10047226 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:103223 (MGI:MGI:5429122|PMID:22627278)
GO_REF:0000107
RGD
Ensembl
PMID:22627278 GO_REF:0000107, MGI:MGI:5429122 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Pax6 paired box 6 ISO
IEA
(PMID:7550230)
GO_REF:0000107
RGD
Ensembl
PMID:7550230 GO_REF:0000107 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO (PMID:9437321) RGD PMID:9437321 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:106918|MGI:MGI:2136645 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 ISO (MGI:MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:MGI:3525751 NCBI chr 9:67,234,612...67,284,504
Ensembl chr 9:67,234,303...67,282,600
JBrowse link
G Atf4 activating transcription factor 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:1339872|PMID:10096021), (MGI:MGI:1859108|PMID:10885750), (MGI:MGI:2158533|PMID:11806972)
UniProt
RGD
PMID:10096021, PMID:10885750, PMID:11806972 GO_REF:0000024, MGI:MGI:1339872, MGI:MGI:1859108, MGI:MGI:2158533 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:3665275|MGI:MGI:3777403 (MGI:MGI:3655912|PMID:16799046), (MGI:MGI:3775669|PMID:18056999) RGD PMID:16799046, PMID:18056999 MGI:MGI:3655912, MGI:MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Crygb crystallin, gamma B ISO MGI:MGI:1857597 (MGI:MGI:3691890|PMID:12426373), (MGI:MGI:81294|PMID:8626090) RGD PMID:8626090, PMID:12426373 MGI:MGI:3691890, MGI:MGI:81294 NCBI chr 9:71,796,204...71,798,265
Ensembl chr 9:71,796,204...71,798,265
JBrowse link
G Epha2 Eph receptor A2 ISO (MGI:MGI:3831440|PMID:18948590) RGD PMID:18948590 MGI:MGI:3831440 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194)
(MGI:MGI:1332720|PMID:10080188)
RGD PMID:10080188, PMID:11850194 MGI:MGI:1332720 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 ISO MGI:MGI:1856684 (MGI:MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:MGI:5551670 NCBI chr 3:147,772,006...147,790,946
Ensembl chr 3:147,772,165...147,789,158
JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO
IEA
MGI:MGI:1857137 (MGI:MGI:1316914|PMID:9851982)
GO_REF:0000107
RGD
Ensembl
PMID:9851982 GO_REF:0000107, MGI:MGI:1316914 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO MGI:MGI:98364 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr13:84,075,316...84,217,368
Ensembl chr13:84,083,632...84,217,366
JBrowse link
G Six3 SIX homeobox 3 ISO MGI:MGI:3693322 (MGI:MGI:3692850|PMID:17066077) RGD PMID:17066077 MGI:MGI:3692850 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:101898 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:1888387 (MGI:MGI:1347707|PMID:10571739) RGD PMID:10571739 MGI:MGI:1347707 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member ISO MGI:MGI:4359826 (MGI:MGI:4358852|PMID:19365570) RGD PMID:19365570 MGI:MGI:4358852 NCBI chr 2:226,563,050...226,679,449
Ensembl chr 2:226,563,050...226,679,438
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:3045749|MGI:MGI:3696062 (MGI:MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:1858023|MGI:MGI:3665274|MGI:MGI:3665275 (MGI:MGI:3655912|PMID:16799046), (MGI:MGI:82388|PMID:8812430) RGD PMID:8812430, PMID:16799046 MGI:MGI:3655912, MGI:MGI:82388 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148567|MGI:MGI:3045749 (MGI:MGI:3603687|PMID:16102745)
GO_REF:0000107
RGD
Ensembl
PMID:16102745 GO_REF:0000107, MGI:MGI:3603687 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:MGI:1933072|PMID:11290300) RGD PMID:11290300 MGI:MGI:1933072 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Lctl lactase-like ISO (MGI:MGI:6274960|PMID:29425878) RGD PMID:29425878 MGI:MGI:6274960 NCBI chr 8:69,070,340...69,090,405
Ensembl chr 8:69,070,994...69,086,992
JBrowse link
G Meis1 Meis homeobox 1 ISO MGI:MGI:3029063 (MGI:MGI:3028436|PMID:14713950) RGD PMID:14713950 MGI:MGI:3028436 NCBI chr14:103,182,178...103,321,809
Ensembl chr14:103,181,281...103,321,270
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3605480 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO MGI:MGI:3605481 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr11:57,897,879...57,995,193
Ensembl chr11:57,897,879...57,993,548
JBrowse link
G Pitx3 paired-like homeodomain 3 ISO
ISS
(MGI:MGI:4353482|PMID:19334279)
GO_REF:0000024
RGD
UniProt
PMID:19334279 GO_REF:0000024, MGI:MGI:4353482 NCBI chr 1:265,886,766...265,899,947
Ensembl chr 1:265,887,230...265,899,958
JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:MGI:1332720|PMID:10080188) RGD PMID:10080188 MGI:MGI:1332720 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:MGI:3693412 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:2137412 (MGI:MGI:1201714|PMID:9512512) RGD PMID:9512512 MGI:MGI:1201714
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tdrd7 tudor domain containing 7 ISO
ISS
(PMID:21436445)
GO_REF:0000024
(MGI:MGI:4943339|PMID:21436445)
RGD
UniProt
PMID:21436445 GO_REF:0000024, MGI:MGI:4943339 NCBI chr 5:61,557,909...61,631,719
Ensembl chr 5:61,564,864...61,631,710
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2176682 (MGI:MGI:1329246|PMID:9918694), (MGI:MGI:3774683|PMID:18224708) RGD PMID:9918694, PMID:18224708 MGI:MGI:1329246, MGI:MGI:3774683 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
middle ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 ISO MGI:MGI:1857637 (MGI:MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:MGI:65725 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:2150426 (MGI:MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:MGI:1344210 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 ISO MGI:MGI:3775095 (MGI:MGI:3774741|PMID:18219393) RGD PMID:18219393 MGI:MGI:3774741 NCBI chr 1:23,237,617...23,611,580
Ensembl chr 1:23,409,408...23,610,164
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO
IEA
MGI:MGI:3574787 (MGI:MGI:3527944|PMID:15630379)
GO_REF:0000107
RGD
Ensembl
PMID:15630379 GO_REF:0000107, MGI:MGI:3527944 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:MGI:2388397 (MGI:MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gsc goosecoid homeobox ISO (MGI:MGI:3035838|PMID:14973294) RGD PMID:14973294 MGI:MGI:3035838 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:MGI:102778|MGI:MGI:1857530|MGI:MGI:2385711 (MGI:MGI:3525808|PMID:15634706), (MGI:MGI:3587518|PMID:15861402), (MGI:MGI:3608156|PMID:16221728) RGD PMID:15634706, PMID:15861402, PMID:16221728 MGI:MGI:3525808, MGI:MGI:3587518, MGI:MGI:3608156 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Insig1 insulin induced gene 1 ISO MGI:MGI:1920249 (MGI:MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:MGI:3689278 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515
JBrowse link
G Insig2 insulin induced gene 2 ISO MGI:MGI:1916289 (MGI:MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:MGI:3689278 NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458
JBrowse link
G Msx1 msh homeobox 1 ISO MGI:MGI:1933766 (MGI:MGI:3611627|PMID:16330189) RGD PMID:16330189 MGI:MGI:3611627 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO MGI:MGI:2178233|MGI:MGI:2386570 (MGI:MGI:3712581|PMID:17523175) RGD PMID:17523175 MGI:MGI:3712581 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO MGI:MGI:1934018 (MGI:MGI:3769195|PMID:17712420) RGD PMID:17712420 MGI:MGI:3769195 NCBI chr10:88,979,363...88,986,879
Ensembl chr10:88,979,383...88,986,867
JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:MGI:1931319 (MGI:MGI:3035838|PMID:14973294) RGD PMID:14973294 MGI:MGI:3035838 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Nog noggin ISO
IEA
(PMID:10080184)
GO_REF:0000107
RGD
Ensembl
PMID:10080184 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO
ISS
UniProtKB:Q91ZD1 (MGI:MGI:3848564|PMID:19389375)
GO_REF:0000024
RGD
UniProt
PMID:19389375 GO_REF:0000024, MGI:MGI:3848564 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO
ISS
(MGI:MGI:3848564|PMID:19389375)
GO_REF:0000024
RGD
UniProt
PMID:19389375 GO_REF:0000024, MGI:MGI:3848564 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 ISO
IEA
MGI:MGI:3626341 (MGI:MGI:3623660|PMID:16571658)
GO_REF:0000107
RGD
Ensembl
PMID:16571658 GO_REF:0000107, MGI:MGI:3623660 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:MGI:1857640|MGI:MGI:98218 (MGI:MGI:1306737|PMID:9729491), (MGI:MGI:73363|PMID:7758948) RGD PMID:7758948, PMID:9729491 MGI:MGI:1306737, MGI:MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546
JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:MGI:97712 (MGI:MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051
JBrowse link
G Rpl38 ribosomal protein L38 ISO MGI:MGI:1861228 (MGI:MGI:4888466|PMID:21062742) RGD PMID:21062742 MGI:MGI:4888466 NCBI chr10:103,198,424...103,202,059
Ensembl chr 2:199,479,007...199,479,309
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:MGI:2655195 (MGI:MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six2 SIX homeobox 2 ISO MGI:MGI:96174 (MGI:MGI:3525808|PMID:15634706) RGD PMID:15634706 MGI:MGI:3525808 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:MGI:1932522|MGI:MGI:2179190|MGI:MGI:2179191|MGI:MGI:3619149 (MGI:MGI:3530686|PMID:15652707), (MGI:MGI:3629255|PMID:16600992), (MGI:MGI:4822099|PMID:20501333)
UniProt
RGD
PMID:15652707, PMID:16600992, PMID:20501333 GO_REF:0000024, MGI:MGI:3530686, MGI:MGI:3629255, MGI:MGI:4822099 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 ISO MGI:MGI:3721421 (MGI:MGI:3720547|PMID:17586487) RGD PMID:17586487 MGI:MGI:3720547 NCBI chr18:80,860,995...80,907,744
Ensembl chr18:80,862,372...80,865,584
JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dio3 iodothyronine deiodinase 3 ISO (MGI:MGI:4441081|PMID:20203194) RGD PMID:20203194 MGI:MGI:4441081 NCBI chr 6:134,627,278...134,629,139
Ensembl chr 6:134,627,278...134,629,138
JBrowse link
G Thrb thyroid hormone receptor beta IEA
ISO
GO_REF:0000107
(MGI:MGI:4441081|PMID:20203194)
Ensembl
RGD
PMID:20203194 GO_REF:0000107, MGI:MGI:4441081 NCBI chr15:8,890,578...9,239,815
Ensembl chr15:8,890,578...9,086,282
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator ISO
IEA
MGI:MGI:1857430 (MGI:MGI:1336407|PMID:10321489)
GO_REF:0000107
RGD
Ensembl
PMID:10321489 GO_REF:0000107, MGI:MGI:1336407 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:MGI:3054837 (MGI:MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:MGI:3054140 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
nose morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:MGI:2176418 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO MGI:MGI:5469314 (MGI:MGI:5466629|PMID:23129809) RGD PMID:23129809 MGI:MGI:5466629 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO
IEA
MGI:MGI:1861722 (MGI:MGI:3624188|PMID:16611695)
GO_REF:0000107
RGD
Ensembl
PMID:16611695 GO_REF:0000107, MGI:MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO
IEA
MGI:MGI:1353450 (MGI:MGI:3624188|PMID:16611695)
GO_REF:0000107
RGD
Ensembl
PMID:16611695 GO_REF:0000107, MGI:MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:4439459|PMID:20150232)
GO_REF:0000024
RGD
UniProt
PMID:20150232 GO_REF:0000024, MGI:MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3521833 (MGI:MGI:3513737|PMID:15569927) RGD PMID:15569927 MGI:MGI:3513737 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194) RGD PMID:11850194 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 ISO (MGI:MGI:2136715|PMID:11458394) RGD PMID:11458394 MGI:MGI:2136715 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:4439459|PMID:20150232)
GO_REF:0000024
RGD
UniProt
PMID:20150232 GO_REF:0000024, MGI:MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:95517 (MGI:MGI:2683889|PMID:14623822) RGD PMID:14623822 MGI:MGI:2683889 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf3 fibroblast growth factor 3 ISO MGI:MGI:1099809|MGI:MGI:96604 (MGI:MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:MGI:3720541 NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:95117 (MGI:MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:MGI:3720541 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:2153790 (MGI:MGI:1197797|PMID:9435295) RGD PMID:9435295 MGI:MGI:1197797 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Hesx1 HESX homeobox 1 ISO MGI:MGI:1931124 (MGI:MGI:1206234|PMID:9620767) RGD PMID:9620767 MGI:MGI:1206234 NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:1932522|MGI:MGI:2385468 (MGI:MGI:3795349|PMID:18377888)
GO_REF:0000024
RGD
UniProt
PMID:18377888 GO_REF:0000024, MGI:MGI:3795349 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tcap titin-cap ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:2150426 (MGI:MGI:3702803|PMID:16916509) RGD PMID:16916509 MGI:MGI:3702803 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Tbx1 T-box transcription factor 1 ISO MGI:MGI:3046793 (MGI:MGI:3703494|PMID:17074316) RGD PMID:17074316 MGI:MGI:3703494 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:4,593,389...4,609,641
Ensembl chr20:4,593,389...4,609,631
JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO MGI:MGI:1856106 (MGI:MGI:53623|PMID:5367369) RGD PMID:5367369 MGI:MGI:53623 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 ISO MGI:MGI:2443955 (MGI:MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:MGI:5519140 NCBI chr 4:126,615,998...126,717,434
Ensembl chr 4:126,617,244...126,644,895
JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 ISO MGI:MGI:107935 (MGI:MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:MGI:5519140 NCBI chr 7:69,213,098...69,263,251
Ensembl chr 7:69,213,147...69,263,142
JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:3,958,424...4,080,028
Ensembl chr18:3,958,432...4,080,025
JBrowse link
outer ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:2150426 (MGI:MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:MGI:1344210 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO
IEA
MGI:MGI:3574787 (MGI:MGI:3527944|PMID:15630379)
GO_REF:0000107
RGD
Ensembl
PMID:15630379 GO_REF:0000107, MGI:MGI:3527944 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:MGI:2388397 (MGI:MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO MGI:MGI:1346859 (MGI:MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:MGI:3832113 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO MGI:MGI:1346858 (MGI:MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:MGI:3832113 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 ISO
IEA
MGI:MGI:3626341 (MGI:MGI:3623660|PMID:16571658)
GO_REF:0000107
RGD
Ensembl
PMID:16571658 GO_REF:0000107, MGI:MGI:3623660 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
MGI:MGI:1932522|MGI:MGI:3619149 (MGI:MGI:3629255|PMID:16600992)
GO_REF:0000024
RGD
UniProt
PMID:16600992 GO_REF:0000024, MGI:MGI:3629255 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 ISO (MGI:MGI:5635320|PMID:25677106) RGD PMID:25677106 MGI:MGI:5635320 NCBI chr20:32,276,857...32,353,677
Ensembl chr20:32,276,658...32,353,677
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:235,341,326...235,353,715
Ensembl chr 2:235,341,365...235,353,967
Ensembl chr 2:235,341,365...235,353,967
JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 ISO MGI:MGI:99702 (MGI:MGI:3692135|PMID:15955981) RGD PMID:15955981 MGI:MGI:3692135 NCBI chr20:5,609,620...5,618,899
Ensembl chr20:5,609,625...5,618,260
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
MGI:MGI:1097161 (MGI:MGI:3692135|PMID:15955981)
GO_REF:0000107
RGD
Ensembl
PMID:15955981 GO_REF:0000107, MGI:MGI:3692135 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 ISO MGI:MGI:96683 (MGI:MGI:5318610|PMID:22426483) RGD PMID:22426483 MGI:MGI:5318610 NCBI chr12:9,033,993...9,205,886
Ensembl chr12:9,034,308...9,205,905
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO MGI:MGI:3590648 (MGI:MGI:3614611|PMID:16466397) RGD PMID:16466397 MGI:MGI:3614611 NCBI chr11:36,474,028...36,479,947
Ensembl chr11:36,474,840...36,479,868
JBrowse link
G Kdr kinase insert domain receptor ISO MGI:MGI:95558 (MGI:MGI:5318610|PMID:22426483) RGD PMID:22426483 MGI:MGI:5318610 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183
JBrowse link
G Mir23a microRNA 23a ISO (MGI:MGI:5516374|PMID:24101522) RGD PMID:24101522 MGI:MGI:5516374 NCBI chr19:25,318,582...25,318,656
Ensembl chr19:25,318,582...25,318,656
JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:MGI:3054837 (MGI:MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:MGI:3054140 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IEA
ISO
GO_REF:0000107
(PMID:25406291)
Ensembl
RGD
PMID:25406291 GO_REF:0000107 NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014
JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
JBrowse link
G Mfap2 microfibril associated protein 2 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 5:159,534,202...159,539,750
Ensembl chr 5:159,534,202...159,539,750
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc66 coiled-coil domain containing 66 ISO MGI:MGI:3893603 (MGI:MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:3051713|PMID:15316081), (MGI:MGI:3690408|PMID:16885194) RGD PMID:12915475, PMID:15316081, PMID:16885194 MGI:MGI:2675211, MGI:MGI:3051713, MGI:MGI:3690408 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dscam DS cell adhesion molecule ISO
IEA
MGI:MGI:3761008 (MGI:MGI:3768917|PMID:18216855)
GO_REF:0000107
RGD
Ensembl
PMID:18216855 GO_REF:0000107, MGI:MGI:3768917 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO MGI:MGI:2668595 (MGI:MGI:1334014|PMID:10097103) RGD PMID:10097103 MGI:MGI:1334014 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor ISO (MGI:MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:MGI:2155023 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
G Cntf ciliary neurotrophic factor ISO
IEA
(MGI:MGI:2155023|PMID:11747369)
GO_REF:0000107
RGD
Ensembl
PMID:11747369 GO_REF:0000107, MGI:MGI:2155023 NCBI chr 1:229,599,009...229,601,032
Ensembl chr 1:229,599,009...229,601,032
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:MGI:2155023 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO
ISS
UniProtKB:F8W3V6 (MGI:MGI:5306539|PMID:21959375)
GO_REF:0000024
RGD
UniProt
PMID:21959375 GO_REF:0000024, MGI:MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Arl6 ADP-ribosylation factor like GTPase 6 ISO MGI:MGI:4442928|MGI:MGI:5310744 (MGI:MGI:4442100|PMID:20333246), (MGI:MGI:5306530|PMID:22139371) RGD PMID:20333246, PMID:22139371 MGI:MGI:4442100, MGI:MGI:5306530 NCBI chr11:42,858,476...42,884,324
Ensembl chr11:42,858,478...42,884,603
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:3696487|PMID:17234588) RGD PMID:17234588 MGI:MGI:3696487 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dscam DS cell adhesion molecule ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Fat3 FAT atypical cadherin 3 ISO MGI:MGI:1341907 (MGI:MGI:5292419|PMID:21903076) RGD PMID:21903076 MGI:MGI:5292419 NCBI chr 8:14,417,039...15,011,596
Ensembl chr 8:14,417,584...14,880,644
JBrowse link
G Fjx1 four-jointed box kinase 1 ISO MGI:MGI:2444314 (MGI:MGI:5292419|PMID:21903076) RGD PMID:21903076 MGI:MGI:5292419 NCBI chr 3:92,288,818...92,290,919
Ensembl chr 3:92,288,818...92,290,919
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:MGI:3054139|PMID:15363391) RGD PMID:15363391 MGI:MGI:3054139 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Igfn1 immunoglobulin-like and fibronectin type III domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:52,791,188...52,823,037
Ensembl chr13:52,791,606...52,834,134
JBrowse link
G Irx6 iroquois homeobox 6 ISO MGI:MGI:5448232 (MGI:MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:MGI:5447580 NCBI chr19:15,726,633...15,733,442
Ensembl chr19:15,727,514...15,733,412
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:3772525|PMID:18094249), (PMID:10741426)
UniProt
RGD
PMID:10741426, PMID:18094249 GO_REF:0000024, MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Megf11 multiple EGF-like-domains 11 ISO (MGI:MGI:5316136|PMID:22407321) RGD PMID:22407321 MGI:MGI:5316136 NCBI chr 8:69,859,256...70,191,070
Ensembl chr 8:69,971,778...70,184,742
JBrowse link
G Obsl1 obscurin like cytoskeletal adaptor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,673,871...82,699,577
Ensembl chr 9:82,680,384...82,699,551
JBrowse link
G Prom1 prominin 1 ISO (MGI:MGI:3838023|PMID:19228982) RGD PMID:19228982 MGI:MGI:3838023 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO
ISS
(MGI:MGI:3691257|PMID:17075007)
GO_REF:0000024
RGD
UniProt
PMID:17075007 GO_REF:0000024, MGI:MGI:3691257 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M ISO
ISS
(PMID:14623235)
GO_REF:0000024
RGD
UniProt
PMID:14623235 GO_REF:0000024 NCBI chr 9:114,846,095...115,555,261
Ensembl chr 9:114,846,095...115,555,261
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO MGI:MGI:5467544 (MGI:MGI:5462166|PMID:22605914) RGD PMID:22605914 MGI:MGI:5462166 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rs1 retinoschisin 1 ISO MGI:MGI:2179757|MGI:MGI:3056058 (MGI:MGI:2179152|PMID:11983912), (MGI:MGI:3055638|PMID:15326152) RGD PMID:11983912, PMID:15326152 MGI:MGI:2179152, MGI:MGI:3055638 NCBI chr  X:35,749,957...35,777,243
Ensembl chr  X:35,749,957...35,777,243
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO
IBA
(MGI:MGI:5693671|PMID:26287463)
PMID:21873635
RGD PMID:26287463, PMID:21873635 MGI:MGI:5693671, RGD:13792537 NCBI chr10:102,299,593...102,576,554
Ensembl chr10:102,303,028...102,576,878
JBrowse link
G Slc1a1 solute carrier family 1 member 1 ISO MGI:MGI:2655190 (MGI:MGI:4414613|PMID:19766171) RGD PMID:19766171 MGI:MGI:4414613 NCBI chr 1:246,955,017...247,035,159
Ensembl chr 1:246,954,980...247,037,056
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
IEA
(PMID:20607706)
GO_REF:0000107
RGD
Ensembl
PMID:20607706 GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tfap2b transcription factor AP-2 beta ISO (PMID:20607706) RGD PMID:20607706 NCBI chr 9:25,410,669...25,440,568
Ensembl chr 9:25,410,669...25,440,411
JBrowse link
G Tspan12 tetraspanin 12 ISO
ISS
(MGI:MGI:4410396|PMID:19837033)
GO_REF:0000024
RGD
UniProt
PMID:19837033 GO_REF:0000024, MGI:MGI:4410396 NCBI chr 4:48,852,823...48,953,240
Ensembl chr 4:48,852,827...48,928,372
JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:MGI:3707409 (MGI:MGI:3703109|PMID:17092954) RGD PMID:17092954 MGI:MGI:3703109 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:3696487|PMID:17234588), (MGI:MGI:5608935|PMID:25147295) RGD PMID:12915475, PMID:17234588, PMID:25147295 MGI:MGI:2675211, MGI:MGI:3696487, MGI:MGI:5608935 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3848562|PMID:19389377)
Ensembl
UniProt
RGD
PMID:19389377 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3848562 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (PMID:15346351) RGD PMID:15346351 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:2156191 (MGI:MGI:3823171|PMID:18985738) RGD PMID:18985738 MGI:MGI:3823171 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 ISO MGI:MGI:2159011|MGI:MGI:2673381 (MGI:MGI:4453938|PMID:20144606) RGD PMID:20144606 MGI:MGI:4453938 NCBI chr 9:112,293,388...112,451,677
Ensembl chr 9:112,293,388...112,451,677
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:MGI:5789479|PMID:27008858) RGD PMID:27008858 MGI:MGI:5789479 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO MGI:MGI:3605481 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr11:57,897,879...57,995,193
Ensembl chr11:57,897,879...57,993,548
JBrowse link
G Prom1 prominin 1 ISO (PMID:18654668) RGD PMID:18654668 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO MGI:MGI:3701996 (MGI:MGI:3701413|PMID:17301087) RGD PMID:17301087 MGI:MGI:3701413 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO MGI:MGI:2386674 (MGI:MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:MGI:1354839 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:3625176 (MGI:MGI:3624065|PMID:16651659) RGD PMID:16651659 MGI:MGI:3624065 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Vsx2 visual system homeobox 2 ISO MGI:MGI:1856112 (MGI:MGI:3701027|PMID:16854970), (MGI:MGI:79586|PMID:8630490) RGD PMID:8630490, PMID:16854970 MGI:MGI:3701027, MGI:MGI:79586 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:MGI:3707409 (MGI:MGI:3703109|PMID:17092954) RGD PMID:17092954 MGI:MGI:3703109 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:MGI:3056615 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Casz1 castor zinc finger 1 ISO (MGI:MGI:5630049|PMID:24467707) RGD PMID:24467707 MGI:MGI:5630049 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Irx5 iroquois homeobox 5 ISO MGI:MGI:1890816 (MGI:MGI:3776945|PMID:18322081) RGD PMID:18322081 MGI:MGI:3776945 NCBI chr19:16,415,813...16,421,088
Ensembl chr19:16,415,636...16,421,191
JBrowse link
G Irx6 iroquois homeobox 6 ISO MGI:MGI:5448232 (MGI:MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:MGI:5447580 NCBI chr19:15,726,633...15,733,442
Ensembl chr19:15,727,514...15,733,412
JBrowse link
G Vsx1 visual system homeobox 1 ISO MGI:MGI:1859086|MGI:MGI:3033929|MGI:MGI:3040317 (MGI:MGI:3029641|PMID:14745032), (MGI:MGI:3039332|PMID:15043821), (MGI:MGI:3776945|PMID:18322081) RGD PMID:14745032, PMID:15043821, PMID:18322081 MGI:MGI:3029641, MGI:MGI:3039332, MGI:MGI:3776945 NCBI chr 3:146,484,235...146,494,757
Ensembl chr 3:146,484,238...146,491,837
JBrowse link
G Vsx2 visual system homeobox 2 ISO MGI:MGI:1856112 (MGI:MGI:79586|PMID:8630490) RGD PMID:8630490 MGI:MGI:79586 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 ISO (MGI:MGI:6214404|PMID:30146259) RGD PMID:30146259 MGI:MGI:6214404 NCBI chr 7:97,559,653...97,707,872
Ensembl chr 7:97,559,841...97,695,739
JBrowse link
retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
MGI:MGI:1857429 (MGI:MGI:2677551|PMID:14517994)
GO_REF:0000107
RGD
Ensembl
PMID:14517994 GO_REF:0000107, MGI:MGI:2677551 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Faslg Fas ligand ISO MGI:MGI:1856384 (MGI:MGI:2677551|PMID:14517994) RGD PMID:14517994 MGI:MGI:2677551 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO MGI:MGI:2682641 (MGI:MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Cabp4 calcium binding protein 4 ISO MGI:MGI:3056615 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 1:219,383,452...219,388,009
Ensembl chr 1:219,383,452...219,388,009
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO MGI:MGI:3608770 (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 9:43,807,412...43,858,225
Ensembl chr 9:43,807,677...43,854,396
JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO MGI:MGI:2664293 (MGI:MGI:4441081|PMID:20203194) RGD PMID:20203194 MGI:MGI:4441081 NCBI chr 6:134,627,278...134,629,139
Ensembl chr 6:134,627,278...134,629,138
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO MGI:MGI:3588845 (MGI:MGI:3714271|PMID:17065522), (MGI:MGI:4849309|PMID:21052544) RGD PMID:17065522, PMID:21052544 MGI:MGI:3714271, MGI:MGI:4849309 NCBI chr 2:210,880,754...210,890,765
Ensembl chr 2:210,880,777...210,889,881
JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 ISO
IEA
(MGI:MGI:4849309|PMID:21052544)
GO_REF:0000107
RGD
Ensembl
PMID:21052544 GO_REF:0000107, MGI:MGI:4849309 NCBI chr 2:50,099,576...50,499,799
Ensembl chr 2:50,099,576...50,499,799
JBrowse link
G Mir124-1 microRNA 124-1 ISO MGI:MGI:3618700|MGI:MGI:5307015|MGI:MGI:5307017 (MGI:MGI:5303045|PMID:21857657) RGD PMID:21857657 MGI:MGI:5303045 NCBI chr15:47,964,298...47,964,382
Ensembl chr15:47,964,298...47,964,382
JBrowse link
G Mir124-2 microRNA 124-2 ISO MGI:MGI:2676807 (MGI:MGI:5303045|PMID:21857657) RGD PMID:21857657 MGI:MGI:5303045 NCBI chr 2:102,311,603...102,311,711
Ensembl chr 2:102,311,603...102,311,711
JBrowse link
G Mir183 microRNA 183 ISO MGI:MGI:2676846|MGI:MGI:3619440 (MGI:MGI:5469752|PMID:23341629) RGD PMID:23341629 MGI:MGI:5469752 NCBI chr 4:57,463,569...57,463,678
Ensembl chr 4:57,463,569...57,463,678
JBrowse link
G Mir96 microRNA 96 ISO MGI:MGI:2676846|MGI:MGI:2676847 (MGI:MGI:5469752|PMID:23341629) RGD PMID:23341629 MGI:MGI:5469752 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:256,822,099...256,885,879
Ensembl chr 1:256,822,334...256,877,810
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3652638|PMID:16574740)
Ensembl
UniProt
RGD
PMID:16574740 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3652638 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Thrb thyroid hormone receptor beta IEA
ISO
GO_REF:0000107
(MGI:MGI:4441081|PMID:20203194)
Ensembl
RGD
PMID:20203194 GO_REF:0000107, MGI:MGI:4441081 NCBI chr15:8,890,578...9,239,815
Ensembl chr15:8,890,578...9,086,282
JBrowse link
G Thy1 Thy-1 cell surface antigen ISO
IBA
ISS
(MGI:MGI:1349255|PMID:10567740)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10567740, PMID:21873635 GO_REF:0000024, MGI:MGI:1349255, RGD:13792537 NCBI chr 8:48,382,121...48,387,271
Ensembl chr 8:48,382,121...48,386,935
JBrowse link
G Ush1c USH1 protein network component harmonin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein ISO MGI:MGI:3576051 (MGI:MGI:3588454|PMID:16000322) RGD PMID:16000322 MGI:MGI:3588454 NCBI chr 4:117,371,544...117,472,310
Ensembl chr 4:117,371,659...117,472,198
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO MGI:MGI:3045473 (MGI:MGI:3044824|PMID:15173597) RGD PMID:15173597 MGI:MGI:3044824 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:MGI:3054837 (MGI:MGI:3814679|PMID:17255172) RGD PMID:17255172 MGI:MGI:3814679 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO MGI:MGI:3893603 (MGI:MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Cfh complement factor H ISO (MGI:MGI:3760334|PMID:17921253) RGD PMID:17921253 MGI:MGI:3760334 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Miat myocardial infarction associated transcript ISO MGI:MGI:3665263 (MGI:MGI:3655931|PMID:16877424) RGD PMID:16877424 MGI:MGI:3655931 NCBI chr12:50,447,251...50,461,859 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO MGI:MGI:1934018 (MGI:MGI:3769195|PMID:17712420) RGD PMID:17712420 MGI:MGI:3769195 NCBI chr10:88,979,363...88,986,879
Ensembl chr10:88,979,383...88,986,867
JBrowse link
G Nrl neural retina leucine zipper ISO
IBA
MGI:MGI:2152376 (MGI:MGI:2385798|PMID:11694879)
PMID:21873635
RGD PMID:11694879, PMID:21873635 MGI:MGI:2385798, RGD:13792537 NCBI chr15:34,197,115...34,201,408
Ensembl chr15:34,197,193...34,198,921
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO
IEA
MGI:MGI:3039928 (MGI:MGI:3039190|PMID:10516311)
GO_REF:0000107
RGD
Ensembl
PMID:10516311 GO_REF:0000107, MGI:MGI:3039190 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:3652638|PMID:16574740), (MGI:MGI:4366105|PMID:19805139)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:16574740, PMID:19805139 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3652638, MGI:MGI:4366105 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858) RGD PMID:14507858 MGI:MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rpgrip1l Rpgrip1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 ISO
IEA
MGI:MGI:4421441 (MGI:MGI:4420740|PMID:19966281)
GO_REF:0000107
RGD
Ensembl
PMID:19966281 GO_REF:0000107, MGI:MGI:4420740 NCBI chr 1:124,983,391...125,101,759
Ensembl chr 1:124,983,452...125,099,573
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO
ISS
MGI:MGI:98371 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:98370 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:1859647 (MGI:MGI:3575490|PMID:15765517) RGD PMID:15765517 MGI:MGI:3575490 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:MGI:98493 (MGI:MGI:4397600|PMID:19855134) RGD PMID:19855134 MGI:MGI:4397600 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:MGI:1857803 (MGI:MGI:1335261|PMID:10072433) RGD PMID:10072433 MGI:MGI:1335261 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:95517 (MGI:MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:MGI:3720541 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf3 fibroblast growth factor 3 ISO MGI:MGI:1099809 (MGI:MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:MGI:3720541 NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 ISO MGI:MGI:3037444 (MGI:MGI:2157256|PMID:11784868) RGD PMID:11784868 MGI:MGI:2157256 NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
MGI:MGI:2444748 (MGI:MGI:4397600|PMID:19855134)
GO_REF:0000024
RGD
UniProt
PMID:19855134 GO_REF:0000024, MGI:MGI:4397600 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO
IEA
MGI:MGI:1861230 (MGI:MGI:5294688|PMID:21980308)
GO_REF:0000107
RGD
Ensembl
PMID:21980308 GO_REF:0000107, MGI:MGI:5294688 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
tongue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:16828469 RGD:2289002 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 ISO (MGI:MGI:3809313|PMID:18816858) RGD PMID:18816858 MGI:MGI:3809313 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Fuz fuzzy planar cell polarity protein ISO MGI:MGI:3531090 (MGI:MGI:5912570|PMID:27158779) RGD PMID:27158779 MGI:MGI:5912570 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Hoxc13 homeobox C13 ISO MGI:MGI:1926422 (MGI:MGI:1195385|PMID:9420327) RGD PMID:9420327 MGI:MGI:1195385 NCBI chr 7:144,531,814...144,538,298
Ensembl chr 7:144,531,814...144,537,966
JBrowse link
G Intu inturned planar cell polarity protein ISO
IEA
(PMID:27158779)
GO_REF:0000107
RGD
Ensembl
PMID:27158779 GO_REF:0000107 NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
JBrowse link
G Krt13 keratin 13 IEP RGD PMID:16271699 RGD:1600171 NCBI chr10:88,032,130...88,036,040
Ensembl chr10:88,032,130...88,036,040
JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
(MGI:MGI:3809313|PMID:18816858)
GO_REF:0000024
RGD
UniProt
PMID:18816858 GO_REF:0000024, MGI:MGI:3809313 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO
IEA
(PMID:27158779)
MGI:MGI:5558100 (MGI:MGI:5912570|PMID:27158779)
GO_REF:0000107
RGD
Ensembl
PMID:27158779 GO_REF:0000107, MGI:MGI:5912570 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase, receptor type, Q ISO
IEA
MGI:MGI:2679316 (MGI:MGI:5315778|PMID:22357859)
GO_REF:0000107
RGD
Ensembl
PMID:22357859 GO_REF:0000107, MGI:MGI:5315778 NCBI chr 7:49,763,657...50,034,932
Ensembl chr 7:49,763,657...50,034,932
JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5608770|PMID:25124451)
Ensembl
RGD
PMID:25124451 GO_REF:0000107, MGI:MGI:5608770 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure morphogenesis 2877
        animal organ morphogenesis 1151
          sensory organ morphogenesis 321
            ear morphogenesis + 140
            eye morphogenesis + 187
            nematode male tail mating organ morphogenesis 0
            nose morphogenesis 2
            ocellus morphogenesis 0
            taste bud morphogenesis + 0
            tongue morphogenesis + 14
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              animal organ morphogenesis 1151
                sensory organ morphogenesis 321
                  ear morphogenesis + 140
                  eye morphogenesis + 187
                  nematode male tail mating organ morphogenesis 0
                  nose morphogenesis 2
                  ocellus morphogenesis 0
                  taste bud morphogenesis + 0
                  tongue morphogenesis + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.