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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary plasm
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Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm


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ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEK4 NIMA related kinase 4 ISO RGD PMID:21685204 RGD:13204813 NCBI chr 3:52,649,280...52,712,645
Ensembl chr 3:53,878,760...53,938,520
JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT88 intraflagellar transport 88 ISO (MGI:MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:MGI:5544506 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector ISO (MGI:MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:MGI:5544506 NCBI chr2A:63,180,279...63,658,804
Ensembl chr2A:64,325,379...64,785,256
JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPAG16 sperm associated antigen 16 ISO (MGI:MGI:2389554|PMID:12391165)
(MGI:MGI:3766863|PMID:17699735)
MGI PMID:12391165, PMID:17699735 MGI:MGI:2389554, MGI:MGI:3766863 NCBI chr2B:100,539,441...101,666,204
Ensembl chr2B:219,014,837...220,139,314
JBrowse link
G SPAG17 sperm associated antigen 17 ISO (MGI:MGI:3807761|PMID:15827353)
(MGI:MGI:5576118|PMID:23418344)
MGI PMID:15827353, PMID:23418344 MGI:MGI:3807761, MGI:MGI:5576118 NCBI chr 1:84,339,906...84,571,723 JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HYDIN HYDIN axonemal central pair apparatus protein ISO (MGI:MGI:3793384|PMID:18250199) MGI PMID:18250199 MGI:MGI:3793384 NCBI chr16:53,785,727...54,210,088
Ensembl chr16:70,661,924...71,063,631
JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFAP94 cilia and flagella associated protein 94 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chr12:61,117,886...61,204,888
Ensembl chr12:63,733,785...63,819,991
JBrowse link
G DNAH5 dynein axonemal heavy chain 5 ISO (MGI:MGI:2178772|PMID:11912187) MGI PMID:11912187 MGI:MGI:2178772 NCBI chr 5:13,989,114...14,316,855
Ensembl chr 5:13,851,391...14,093,358
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 ISO (PMID:11153919) MGI PMID:11153919 NCBI chr17:68,212,341...68,253,732
Ensembl chr17:73,770,753...73,811,845
JBrowse link
G DNAI3 dynein axonemal intermediate chain 3 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chr 1:117,617,609...117,690,284
Ensembl chr 1:86,474,457...86,547,080
JBrowse link
G DNAI4 dynein axonemal intermediate chain 4 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chr 1:66,061,390...66,174,221
Ensembl chr 1:67,953,276...68,059,625
JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 ISO PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chr20:45,262,330...45,376,237
Ensembl chr20:46,327,753...46,442,518
JBrowse link
G CEP162 centrosomal protein 162 ISO (PMID:23644468) UniProtKB PMID:23644468 NCBI chr 6:82,020,149...82,123,096
Ensembl chr 6:85,293,510...85,396,533
JBrowse link
G RPGRIP1L RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174
JBrowse link
G SAXO1 stabilizer of axonemal microtubules 1 ISO (PMID:25673876) UniProtKB PMID:25673876 NCBI chr 9:18,741,406...18,868,726
Ensembl chr 9:19,234,977...19,346,886
JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK8 adenylate kinase 8 ISO (MGI:MGI:5646278|PMID:24740601) MGI PMID:24740601 MGI:MGI:5646278 NCBI chr 9:103,842,850...103,995,331
Ensembl chr 9:132,473,495...132,625,313
JBrowse link
G AKAP14 A-kinase anchoring protein 14 ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chr  X:108,940,756...108,984,227
Ensembl chr  X:119,355,712...119,380,449
JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr11:46,355,026...46,556,091
Ensembl chr11:46,905,454...47,103,205
JBrowse link
G ARL13B ADP ribosylation factor like GTPase 13B ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chr 3:91,044,332...91,121,686
Ensembl chr 3:97,725,136...97,799,932
JBrowse link
G ARL3 ADP ribosylation factor like GTPase 3 ISO (MGI:MGI:5925653|PMID:26455799) UniProtKB PMID:26455799 MGI:MGI:5925653 NCBI chr10:99,271,620...99,312,784
Ensembl chr10:102,735,325...102,775,849
JBrowse link
G ATG14 autophagy related 14 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr14:35,953,228...35,998,650
Ensembl chr14:54,226,720...54,272,018
JBrowse link
G ATG16L1 autophagy related 16 like 1 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr2B:120,479,534...120,523,563
Ensembl chr2B:239,392,990...239,436,766
JBrowse link
G ATG5 autophagy related 5 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr 6:103,997,824...104,140,931
Ensembl chr 6:107,871,208...108,013,807
JBrowse link
G ATG7 autophagy related 7 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr 3:11,208,600...11,488,757
Ensembl chr 3:11,554,100...11,833,398
JBrowse link
G BBS5 Bardet-Biedl syndrome 5 ISO (MGI:MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:MGI:5588761 NCBI chr2B:56,751,129...56,776,637
Ensembl chr2B:174,220,825...174,245,820
JBrowse link
G BBS7 Bardet-Biedl syndrome 7 ISO (MGI:MGI:5492028|PMID:22302990) MGI PMID:22302990 MGI:MGI:5492028 NCBI chr 4:114,024,949...114,072,000
Ensembl chr 4:125,161,804...125,208,350
JBrowse link
G CCDC114 coiled-coil domain containing 114 ISO (PMID:25192045) SYSCILIA_CCNET PMID:25192045 NCBI chr19:45,297,346...45,322,895
Ensembl chr19:53,891,345...53,915,541
JBrowse link
G CCDC151 coiled-coil domain containing 151 ISO (PMID:25192045) UniProtKB PMID:25192045 NCBI chr19:10,967,913...10,982,032
Ensembl chr19:11,678,306...11,693,332
JBrowse link
G CCDC39 coiled-coil domain containing 39 ISO (PMID:21131972), (PMID:21131974), (PMID:26387594) UniProtKB PMID:21131972, PMID:21131974, PMID:26387594 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362
JBrowse link
G CCDC40 coiled-coil domain containing 40 ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565
JBrowse link
G CCSAP centriole, cilia and spindle associated protein ISO (PMID:22493317) UniProtKB PMID:22493317 NCBI chr 1:204,865,261...204,887,279 JBrowse link
G CENPF centromere protein F ISO (MGI:MGI:5694347|PMID:25564561) MGI PMID:25564561 MGI:MGI:5694347 NCBI chr 1:190,170,414...190,231,478
Ensembl chr 1:195,024,877...195,086,518
JBrowse link
G CFAP43 cilia and flagella associated protein 43 ISO (MGI:MGI:6402702|PMID:31884020) MGI PMID:31884020 MGI:MGI:6402702 NCBI chr10:100,729,982...100,831,694
Ensembl chr10:104,188,653...104,290,557
JBrowse link
G CFAP70 cilia and flagella associated protein 70 ISO (MGI:MGI:6383288|PMID:30158508) UniProt PMID:30158508 MGI:MGI:6383288 NCBI chr10:69,801,407...69,906,688
Ensembl chr10:72,260,229...72,360,714
JBrowse link
G CLUAP1 clusterin associated protein 1 colocalizes_with ISO (MGI:MGI:5488668|PMID:23351563) MGI PMID:23351563 MGI:MGI:5488668 NCBI chr16:2,423,563...2,461,486
Ensembl chr16:3,600,370...3,637,622
JBrowse link
G CTSH cathepsin H ISO RGD PMID:12838426 RGD:5686399 NCBI chr15:57,893,379...57,917,194
Ensembl chr15:76,852,668...76,876,976
JBrowse link
G CYS1 cystin 1 ISO (MGI:MGI:2158985|PMID:11854326), (MGI:MGI:4461844|PMID:19850956)
(MGI:MGI:4461844|PMID:19850956)
MGI PMID:11854326, PMID:19850956 MGI:MGI:2158985, MGI:MGI:4461844 NCBI chr2A:10,053,361...10,078,264 JBrowse link
G DCDC2 doublecortin domain containing 2 ISO (PMID:25557784), (PMID:27319779) UniProtKB PMID:25557784, PMID:27319779 NCBI chr 6:24,001,971...24,186,530
Ensembl chr 6:24,337,188...24,520,082
JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 ISO (PMID:18385425) UniProtKB PMID:18385425 NCBI chr16:64,810,498...64,843,705 JBrowse link
G DNAH1 dynein axonemal heavy chain 1 ISO (PMID:24360805) UniProtKB PMID:24360805 NCBI chr 3:52,233,271...52,342,627
Ensembl chr 3:53,491,822...53,572,393
JBrowse link
G DNAH11 dynein axonemal heavy chain 11 ISO (MGI:MGI:6120222|PMID:26909801)
(PMID:31178125)
MGI
UniProt
PMID:26909801, PMID:31178125 MGI:MGI:6120222 NCBI chr 7:22,228,345...22,585,681
Ensembl chr 7:21,540,932...21,897,485
JBrowse link
G DNAH17 dynein axonemal heavy chain 17 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chr17:72,499,363...72,648,624
Ensembl chr17:78,048,578...78,195,014
JBrowse link
G DNAH2 dynein axonemal heavy chain 2 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chr17:7,746,731...7,867,426
Ensembl chr17:7,739,573...7,853,752
JBrowse link
G DNAH5 dynein axonemal heavy chain 5 ISO (MGI:MGI:5551687|PMID:23849778), (MGI:MGI:5607335|PMID:25192045), (MGI:MGI:6284218|PMID:29916806)
(PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
MGI PMID:15750039, PMID:16492982, PMID:18950741, PMID:23849778, PMID:24203976, PMID:25192045, PMID:26387594, PMID:26909801, PMID:29916806, PMID:31178125 MGI:MGI:5551687, MGI:MGI:5607335, MGI:MGI:6284218 NCBI chr 5:13,989,114...14,316,855
Ensembl chr 5:13,851,391...14,093,358
JBrowse link
G DNAH8 dynein axonemal heavy chain 8 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chr 6:38,275,243...38,620,278
Ensembl chr 6:39,479,294...39,800,107
JBrowse link
G DNAH9 dynein axonemal heavy chain 9 ISO (PMID:11104725), (PMID:11839535), (PMID:15750039), (PMID:18950741), (PMID:23849778), (PMID:31178125) SYSCILIA_CCNET PMID:11104725, PMID:11839535, PMID:15750039, PMID:18950741, PMID:23849778, PMID:31178125 NCBI chr17:39,673,338...40,047,090
Ensembl chr17:44,422,928...44,796,983
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 ISO (PMID:11153919)
(MGI:MGI:6284218|PMID:29916806)
(PMID:18950741), (PMID:23849778)
MGI
SYSCILIA_CCNET
PMID:11153919, PMID:18950741, PMID:23849778, PMID:29916806 MGI:MGI:6284218 NCBI chr17:68,212,341...68,253,732
Ensembl chr17:73,770,753...73,811,845
JBrowse link
G DNAI4 dynein axonemal intermediate chain 4 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chr 1:66,061,390...66,174,221
Ensembl chr 1:67,953,276...68,059,625
JBrowse link
G DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 ISO (MGI:MGI:3806784|PMID:18247331) MGI PMID:18247331 MGI:MGI:3806784 NCBI chr11:69,022,757...69,043,006
Ensembl chr11:72,330,992...72,349,858
JBrowse link
G DNALI1 dynein axonemal light intermediate chain 1 ISO (MGI:MGI:3628860|PMID:16496424), (MGI:MGI:6284218|PMID:29916806)
(PMID:23849778), (PMID:26909801), (PMID:31178125)
MGI PMID:16496424, PMID:23849778, PMID:26909801, PMID:29916806, PMID:31178125 MGI:MGI:3628860, MGI:MGI:6284218 NCBI chr 1:36,829,963...36,839,898
Ensembl chr 1:38,179,381...38,189,378
JBrowse link
G DRC3 dynein regulatory complex subunit 3 ISO (PMID:26387594) MGI PMID:26387594 NCBI chr17:33,278,528...33,324,351
Ensembl chr17:38,226,305...38,272,013
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 ISO (MGI:MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:MGI:5009180 NCBI chr11:98,051,788...98,425,676
Ensembl chr11:101,536,471...101,909,194
JBrowse link
G DYNC2I2 dynein 2 intermediate chain 2 ISO (MGI:MGI:5551675|PMID:24183451) UniProtKB PMID:24183451 MGI:MGI:5551675 NCBI chr 9:99,755,972...99,780,279
Ensembl chr 9:128,423,053...128,447,387
JBrowse link
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 ISO (MGI:MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:MGI:5009180 NCBI chr2A:43,858,368...43,912,262
Ensembl chr2A:44,706,777...44,742,724
JBrowse link
G DYNLT2B dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) GO_Central PMID:25830415 NCBI chr 3:193,636,238...193,665,254
Ensembl chr 3:203,580,040...203,607,189
JBrowse link
G DZIP1L DAZ interacting zinc finger protein 1 like ISO (MGI:MGI:6149643|PMID:29487109) MGI PMID:29487109 MGI:MGI:6149643 NCBI chr 3:135,089,250...135,143,117
Ensembl chr 3:142,541,624...142,582,817
JBrowse link
G EFHC1 EF-hand domain containing 1 ISO (MGI:MGI:3529636|PMID:15670853) UniProtKB PMID:15670853 MGI:MGI:3529636 NCBI chr 6:51,972,041...52,044,219
Ensembl chr 6:53,239,474...53,344,404
JBrowse link
G GABARAP GABA type A receptor-associated protein ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr17:7,270,316...7,272,365
Ensembl chr17:7,257,659...7,260,276
JBrowse link
G GAS8 growth arrest specific 8 ISO (PMID:16643277), (PMID:26387594) UniProtKB PMID:16643277, PMID:26387594 NCBI chr16:70,777,446...70,806,437
Ensembl chr16:90,444,141...90,467,849
JBrowse link
G GLI1 GLI family zinc finger 1 ISO (MGI:MGI:3692156|PMID:16254602) CACAO PMID:16254602 MGI:MGI:3692156 NCBI chr12:31,453,759...31,466,194
Ensembl chr12:31,710,057...31,722,473
JBrowse link
G GLI2 GLI family zinc finger 2 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G GNAT3 G protein subunit alpha transducin 3 ISO RGD PMID:17021831 RGD:2302145 NCBI chr 7:72,422,660...72,476,887
Ensembl chr 7:86,085,465...86,139,227
JBrowse link
G IFT140 intraflagellar transport 140 ISO (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5553228|PMID:23418020) MGI PMID:20368623, PMID:23418020 MGI:MGI:4460838, MGI:MGI:5553228 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884
JBrowse link
G IFT57 intraflagellar transport 57 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chr 3:105,287,086...105,348,872
Ensembl chr 3:112,222,128...112,282,069
JBrowse link
G IFT88 intraflagellar transport 88 ISO (MGI:MGI:2158985|PMID:11854326), (MGI:MGI:2664063|PMID:11251073), (MGI:MGI:3773480|PMID:18066062), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5544506|PMID:24302887) MGI PMID:11251073, PMID:11854326, PMID:18066062, PMID:20368623, PMID:24302887 MGI:MGI:2158985, MGI:MGI:2664063, MGI:MGI:3773480, MGI:MGI:4460838, MGI:MGI:5544506 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204
JBrowse link
G INPP5E inositol polyphosphate-5-phosphatase E ISO (PMID:19668215)
(MGI:MGI:4359555|PMID:19668215)
UniProtKB PMID:19668215 MGI:MGI:4359555 NCBI chr 9:107,502,838...107,516,325
Ensembl chr 9:136,483,144...136,492,731
JBrowse link
G KIF17 kinesin family member 17 ISO (MGI:MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:MGI:4353477 NCBI chr 1:19,611,573...19,666,698
Ensembl chr 1:20,658,870...20,711,288
JBrowse link
G KIF3A kinesin family member 3A ISO RGD PMID:9920666 RGD:1581597 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431
JBrowse link
G KIFAP3 kinesin associated protein 3 ISO (MGI:MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:MGI:4353477 NCBI chr 1:145,410,755...145,564,248
Ensembl chr 1:149,127,548...149,280,831
JBrowse link
G LCA5 lebercilin LCA5 ISO (MGI:MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:MGI:5588761 NCBI chr 6:77,366,248...77,418,718
Ensembl chr 6:80,636,181...80,688,609
JBrowse link
G LOC100973318 armadillo repeat-containing protein 4 ISO (PMID:23849778), (PMID:24203976) SYSCILIA_CCNET PMID:23849778, PMID:24203976 NCBI chr10:27,959,535...28,133,143
Ensembl chr10:28,320,425...28,502,925
JBrowse link
G MAK male germ cell associated kinase ISO (MGI:MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:MGI:5298333 NCBI chr 6:10,604,723...10,679,712
Ensembl chr 6:10,882,745...10,956,579
JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr16:68,063,869...68,076,772 JBrowse link
G MAP4 microtubule associated protein 4 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr 3:47,763,379...47,995,457 JBrowse link
G MAPK15 mitogen-activated protein kinase 15 NOT ISO (PMID:29021280) UniProtKB PMID:29021280 NCBI chr 8:140,468,365...140,474,604
Ensembl chr 8:143,481,567...143,492,859
JBrowse link
G MAPT microtubule associated protein tau ISO (MGI:MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:MGI:3821640 NCBI chr17:11,373,220...11,506,669
Ensembl chr17:11,458,159...11,523,129
JBrowse link
G MNS1 meiosis specific nuclear structural 1 ISO (MGI:MGI:5318625|PMID:22396656) MGI PMID:22396656 MGI:MGI:5318625 NCBI chr15:35,377,490...35,433,871
Ensembl chr15:53,714,110...53,750,050
JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr 3:127,743,873...127,834,512
Ensembl chr 3:135,089,584...135,157,193
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chr19:13,657,344...13,683,864
Ensembl chr19:14,385,191...14,406,205
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chr17:62,448,718...62,488,493
Ensembl chr17:67,838,484...67,877,943
JBrowse link
G PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chr 3:48,665,421...48,774,111
Ensembl chr 3:49,747,611...49,854,382
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:4461813|PMID:20592197), (MGI:MGI:5588761|PMID:24833722), (MGI:MGI:6194004|PMID:29899041) MGI PMID:14507858, PMID:20368623, PMID:20592197, PMID:24833722, PMID:29899041 MGI:MGI:2676521, MGI:MGI:4460838, MGI:MGI:4461813, MGI:MGI:5588761, MGI:MGI:6194004 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RP1L1 RP1 like 1 ISO (MGI:MGI:4353917|PMID:19657028) UniProtKB PMID:19657028 MGI:MGI:4353917 NCBI chr 8:8,586,410...8,605,275 JBrowse link
G RPGRIP1 RPGR interacting protein 1 ISO (MGI:MGI:1933524|PMID:11104772) MGI PMID:11104772 MGI:MGI:1933524 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064
JBrowse link
G RPGRIP1L RPGRIP1 like ISO (PMID:17558409) MGI PMID:17558409 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174
JBrowse link
G RSPH4A radial spoke head component 4A ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chr 6:114,423,322...114,441,199
Ensembl chr 6:118,568,907...118,585,812
JBrowse link
G RSPH6A radial spoke head 6 homolog A ISO (MGI:MGI:6279049|PMID:30239614) UniProt PMID:30239614 MGI:MGI:6279049 NCBI chr19:42,805,151...42,824,725
Ensembl chr19:51,342,729...51,361,239
JBrowse link
G RSPH9 radial spoke head component 9 ISO (PMID:26909801)
(MGI:MGI:6451324|PMID:30383886)
GO_Central
UniProt
PMID:26909801, PMID:30383886 MGI:MGI:6451324 NCBI chr 6:43,234,531...43,261,040
Ensembl chr 6:44,524,408...44,550,569
JBrowse link
G SEPTIN2 septin 2 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr2B:128,586,659...128,624,991
Ensembl chr2B:247,380,771...247,419,556
JBrowse link
G SEPTIN7 septin 7 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr 7:36,427,252...36,531,668
Ensembl chr 7:36,662,430...36,766,632
JBrowse link
G SEPTIN9 septin 9 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr17:71,361,002...71,580,995
Ensembl chr17:76,920,236...77,139,586
JBrowse link
G SPAG16 sperm associated antigen 16 ISO (MGI:MGI:3052627|PMID:15328412), (MGI:MGI:3619868|PMID:16382026), (MGI:MGI:3844768|PMID:19305393) MGI PMID:15328412, PMID:16382026, PMID:19305393 MGI:MGI:3052627, MGI:MGI:3619868, MGI:MGI:3844768 NCBI chr2B:100,539,441...101,666,204
Ensembl chr2B:219,014,837...220,139,314
JBrowse link
G SPATA7 spermatogenesis associated 7 ISO (PMID:25398945) UniProtKB PMID:25398945 NCBI chr14:69,002,723...69,056,185
Ensembl chr14:88,367,757...88,415,045
JBrowse link
G TCTEX1D4 Tctex1 domain containing 4 ISO (MGI:MGI:5510909|PMID:23789093) MGI PMID:23789093 MGI:MGI:5510909 NCBI chr 1:44,110,060...44,111,524
Ensembl chr 1:45,476,034...45,476,705
JBrowse link
G TMEM67 transmembrane protein 67 colocalizes_with ISO RGD PMID:23516626 RGD:11535084 NCBI chr 8:90,378,623...90,442,904
Ensembl chr 8:92,324,402...92,387,437
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 ISO (MGI:MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:MGI:5298450 NCBI chr2B:125,558,537...125,637,733
Ensembl chr2B:244,405,992...244,481,785
JBrowse link
G TTC25 tetratricopeptide repeat domain 25 ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chr17:15,349,353...15,385,293
Ensembl chr17:15,570,316...15,603,787
JBrowse link
G TTLL10 tubulin tyrosine ligase like 10 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 Ensembl chr 1:1,131,691...1,155,349 JBrowse link
G TTLL3 tubulin tyrosine ligase like 3 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chr 3:9,759,871...9,786,690
Ensembl chr 3:9,999,144...10,035,633
JBrowse link
G TTLL8 tubulin tyrosine ligase like 8 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chr22:30,242,515...30,286,759
Ensembl chr22:49,245,796...49,286,113
JBrowse link
G TUBB4A tubulin beta 4A class IVa ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chr19:5,521,425...5,529,958
Ensembl chr19:6,441,323...6,451,785
JBrowse link
G TULP3 TUB like protein 3 ISO (MGI:MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:MGI:3841503 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278
JBrowse link
G WDR11 WD repeat domain 11 ISO (MGI:MGI:6116377|PMID:29263200) UniProt PMID:29263200 MGI:MGI:6116377 NCBI chr10:117,430,788...117,488,778
Ensembl chr10:120,845,695...120,903,540
JBrowse link
G WDR35 WD repeat domain 35 ISO (MGI:MGI:4950635|PMID:21473986) UniProtKB PMID:21473986 MGI:MGI:4950635 NCBI chr2A:19,896,498...19,977,295
Ensembl chr2A:20,014,127...20,093,810
JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH9 dynein axonemal heavy chain 9 ISO (PMID:26909801), (PMID:30471717) GO_Central PMID:26909801, PMID:30471717 NCBI chr17:39,673,338...40,047,090
Ensembl chr17:44,422,928...44,796,983
JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH1 dynein axonemal heavy chain 1 ISO (PMID:24360805) SYSCILIA_CCNET PMID:24360805 NCBI chr 3:52,233,271...52,342,627
Ensembl chr 3:53,491,822...53,572,393
JBrowse link
G DNAH7 dynein axonemal heavy chain 7 ISO (PMID:11877439) SYSCILIA_CCNET PMID:11877439 NCBI chr2B:82,981,765...83,314,338
Ensembl chr2B:200,883,742...201,200,239
JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC114 coiled-coil domain containing 114 ISO (PMID:23261303) UniProtKB PMID:23261303 NCBI chr19:45,297,346...45,322,895
Ensembl chr19:53,891,345...53,915,541
JBrowse link
G CFAP70 cilia and flagella associated protein 70 ISO (PMID:31621862) UniProt PMID:31621862 NCBI chr10:69,801,407...69,906,688
Ensembl chr10:72,260,229...72,360,714
JBrowse link
G DNAH17 dynein axonemal heavy chain 17 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chr17:72,499,363...72,648,624
Ensembl chr17:78,048,578...78,195,014
JBrowse link
G DNAH5 dynein axonemal heavy chain 5 ISO (PMID:16627867)
(MGI:MGI:6147712|PMID:27353389)
(PMID:11062149), (PMID:11788826), (PMID:22499950)
SYSCILIA_CCNET
MGI
PMID:11062149, PMID:11788826, PMID:16627867, PMID:22499950, PMID:27353389 MGI:MGI:6147712 NCBI chr 5:13,989,114...14,316,855
Ensembl chr 5:13,851,391...14,093,358
JBrowse link
G DNAH9 dynein axonemal heavy chain 9 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chr17:39,673,338...40,047,090
Ensembl chr17:44,422,928...44,796,983
JBrowse link
G DNAI1 dynein axonemal intermediate chain 1 ISO (PMID:11231901), (PMID:16858015) SYSCILIA_CCNET PMID:11231901, PMID:16858015 NCBI chr 9:34,295,010...34,357,331
Ensembl chr 9:35,104,297...35,167,454
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 ISO (PMID:18950741) SYSCILIA_CCNET PMID:18950741 NCBI chr17:68,212,341...68,253,732
Ensembl chr17:73,770,753...73,811,845
JBrowse link
G DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chr2B:58,977,379...59,039,514
Ensembl chr2B:176,436,471...176,498,638
JBrowse link
G NME8 NME/NM23 family member 8 ISO (PMID:17360648) SYSCILIA_CCNET PMID:17360648 NCBI chr 7:38,128,610...38,536,611
Ensembl chr 7:38,708,937...38,757,795
JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TTC25 tetratricopeptide repeat domain 25 ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chr17:15,349,353...15,385,293
Ensembl chr17:15,570,316...15,603,787
JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH11 dynein axonemal heavy chain 11 ISO (PMID:26909801)
(MGI:MGI:6120222|PMID:26909801)
GO_Central
MGI
PMID:26909801 MGI:MGI:6120222 NCBI chr 7:22,228,345...22,585,681
Ensembl chr 7:21,540,932...21,897,485
JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RSPH4A radial spoke head component 4A ISO (MGI:MGI:5882054|PMID:26506310) MGI PMID:26506310 MGI:MGI:5882054 NCBI chr 6:114,423,322...114,441,199
Ensembl chr 6:118,568,907...118,585,812
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12626
    cellular anatomical entity 12523
      organelle 9692
        cilium 591
          ciliary plasm 103
            axoneme + 102
Path 2
Term Annotations click to browse term
  cellular_component 12626
    cellular anatomical entity 12523
      intracellular anatomical structure 10677
        cytoplasm 8218
          cytoplasmic region 189
            plasma membrane bounded cell projection cytoplasm 145
              ciliary plasm 103
                axoneme + 102
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.