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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary plasm
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Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm


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ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nek4 NIMA related kinase 4 ISO RGD PMID:21685204 RGD:13204813 NCBI chrNW_004955430:2,695,674...2,733,204 JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift88 intraflagellar transport 88 ISO (MGI:MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:MGI:5544506 NCBI chrNW_004955497:1,338,959...1,454,788 JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO (MGI:MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:MGI:5544506 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spag16 sperm associated antigen 16 ISO (MGI:MGI:2389554|PMID:12391165)
(MGI:MGI:3766863|PMID:17699735)
MGI PMID:12391165, PMID:17699735 MGI:MGI:2389554, MGI:MGI:3766863 NCBI chrNW_004955457:1,543,946...2,492,686 JBrowse link
G Spag17 sperm associated antigen 17 ISO (MGI:MGI:3807761|PMID:15827353)
(MGI:MGI:5576118|PMID:23418344)
MGI PMID:15827353, PMID:23418344 MGI:MGI:3807761, MGI:MGI:5576118 NCBI chrNW_004955435:21,063,005...21,281,997 JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin HYDIN axonemal central pair apparatus protein ISO (MGI:MGI:3793384|PMID:18250199) MGI PMID:18250199 MGI:MGI:3793384 NCBI chrNW_004955484:3,567,896...3,948,807 JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap94 cilia and flagella associated protein 94 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004955413:20,227,807...20,287,211 JBrowse link
G Dnah5 dynein axonemal heavy chain 5 ISO (MGI:MGI:2178772|PMID:11912187) MGI PMID:11912187 MGI:MGI:2178772 NCBI chrNW_004955426:3,105,631...3,406,587 JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 ISO (PMID:11153919) MGI PMID:11153919 NCBI chrNW_004955553:1,188,279...1,212,053 JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004955423:8,870,877...8,928,070 JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004955423:24,027,924...24,089,914 JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 ISO PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chrNW_004955445:9,069,803...9,153,746 JBrowse link
G Cep162 centrosomal protein 162 ISO (PMID:23644468) UniProtKB PMID:23644468 NCBI chrNW_004955411:11,661,767...11,727,210 JBrowse link
G Rpgrip1l RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chrNW_004955433:11,321,504...11,423,981 JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 ISO (PMID:25673876) UniProtKB PMID:25673876 NCBI chrNW_004955434:21,414,937...21,454,901 JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 ISO (MGI:MGI:5646278|PMID:24740601) MGI PMID:24740601 MGI:MGI:5646278 NCBI chrNW_004955513:2,069,187...2,185,469 JBrowse link
G Akap14 A-kinase anchoring protein 14 ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955534:120,603...137,227 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955422:1,455,392...1,644,368 JBrowse link
G Arl13b ADP ribosylation factor like GTPase 13B ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004955407:3,402,214...3,477,839 JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 ISO (MGI:MGI:5925653|PMID:26455799) UniProtKB PMID:26455799 MGI:MGI:5925653 NCBI chrNW_004955485:7,739,556...7,772,582 JBrowse link
G Armc4 armadillo repeat containing 4 ISO (PMID:23849778), (PMID:24203976) SYSCILIA_CCNET PMID:23849778, PMID:24203976 NCBI chrNW_004955462:1,709,493...1,885,094 JBrowse link
G Atg14 autophagy related 14 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955466:13,898,311...13,972,506 JBrowse link
G Atg16l1 autophagy related 16 like 1 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955453:2,884,497...2,917,581 JBrowse link
G Atg5 autophagy related 5 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955411:31,501,191...31,646,407 JBrowse link
G Atg7 autophagy related 7 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955429:14,076,976...14,301,034 JBrowse link
G Bbs5 Bardet-Biedl syndrome 5 ISO (MGI:MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:MGI:5588761 NCBI chrNW_004955449:5,043,034...5,061,806 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO (MGI:MGI:5492028|PMID:22302990) MGI PMID:22302990 MGI:MGI:5492028 NCBI chrNW_004955428:18,682,072...18,724,560 JBrowse link
G Ccdc114 coiled-coil domain containing 114 ISO (PMID:25192045) SYSCILIA_CCNET PMID:25192045 NCBI chrNW_004955559:2,123,941...2,153,192 JBrowse link
G Ccdc151 coiled-coil domain containing 151 ISO (PMID:25192045) UniProtKB PMID:25192045 NCBI chrNW_004955495:2,318,840...2,330,966 JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:21131972), (PMID:21131974), (PMID:26387594) UniProtKB PMID:21131972, PMID:21131974, PMID:26387594 NCBI chrNW_004955420:9,689,076...9,727,806 JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chrNW_004955506:2,783,837...2,840,248 JBrowse link
G Ccsap centriole, cilia and spindle associated protein ISO (PMID:22493317) UniProtKB PMID:22493317 NCBI chrNW_004955492:8,685,667...8,700,306 JBrowse link
G Cenpf centromere protein F ISO (MGI:MGI:5694347|PMID:25564561) MGI PMID:25564561 MGI:MGI:5694347 NCBI chrNW_004955406:3,225,788...3,273,037 JBrowse link
G Cfap43 cilia and flagella associated protein 43 ISO (MGI:MGI:6402702|PMID:31884020) MGI PMID:31884020 MGI:MGI:6402702 NCBI chrNW_004955485:6,418,063...6,515,730 JBrowse link
G Cfap70 cilia and flagella associated protein 70 ISO (MGI:MGI:6383288|PMID:30158508) UniProt PMID:30158508 MGI:MGI:6383288 NCBI chrNW_004955437:18,424,568...18,480,327 JBrowse link
G Cluap1 clusterin associated protein 1 colocalizes_with ISO (MGI:MGI:5488668|PMID:23351563) MGI PMID:23351563 MGI:MGI:5488668 NCBI chrNW_004955442:13,843,952...13,890,082 JBrowse link
G Ctsh cathepsin H ISO RGD PMID:12838426 RGD:5686399 NCBI chrNW_004955533:39,237...54,881 JBrowse link
G Cys1 cystin 1 ISO (MGI:MGI:4461844|PMID:19850956)
(MGI:MGI:2158985|PMID:11854326), (MGI:MGI:4461844|PMID:19850956)
MGI PMID:11854326, PMID:19850956 MGI:MGI:2158985, MGI:MGI:4461844 NCBI chrNW_004955487:5,455,820...5,461,362 JBrowse link
G Dcdc2 doublecortin domain containing 2 ISO (PMID:25557784), (PMID:27319779) UniProtKB PMID:25557784, PMID:27319779 NCBI chrNW_004955483:2,608,063...2,783,872 JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 ISO (PMID:18385425) UniProtKB PMID:18385425 NCBI chrNW_004955564:132,497...149,399 JBrowse link
G Dnah1 dynein axonemal heavy chain 1 ISO (PMID:24360805) UniProtKB PMID:24360805 NCBI chrNW_004955430:2,323,928...2,391,470 JBrowse link
G Dnah11 dynein axonemal heavy chain 11 ISO (MGI:MGI:6120222|PMID:26909801)
(PMID:31178125)
MGI
UniProt
PMID:26909801, PMID:31178125 MGI:MGI:6120222 NCBI chrNW_004955410:24,045,333...24,352,626 JBrowse link
G Dnah17 dynein axonemal heavy chain 17 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955506:4,042,768...4,161,022 JBrowse link
G Dnah2 dynein axonemal heavy chain 2 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955467:9,107,089...9,210,941 JBrowse link
G Dnah5 dynein axonemal heavy chain 5 ISO (PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
(MGI:MGI:5551687|PMID:23849778), (MGI:MGI:5607335|PMID:25192045), (MGI:MGI:6284218|PMID:29916806)
MGI PMID:15750039, PMID:16492982, PMID:18950741, PMID:23849778, PMID:24203976, PMID:25192045, PMID:26387594, PMID:26909801, PMID:29916806, PMID:31178125 MGI:MGI:5551687, MGI:MGI:5607335, MGI:MGI:6284218 NCBI chrNW_004955426:3,105,631...3,406,587 JBrowse link
G Dnah8 dynein axonemal heavy chain 8 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955437:4,441,776...4,722,261 JBrowse link
G Dnah9 dynein axonemal heavy chain 9 ISO (PMID:11104725), (PMID:11839535), (PMID:15750039), (PMID:18950741), (PMID:23849778), (PMID:31178125) SYSCILIA_CCNET PMID:11104725, PMID:11839535, PMID:15750039, PMID:18950741, PMID:23849778, PMID:31178125 NCBI chrNW_004955467:5,357,500...5,677,144 JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 ISO (PMID:18950741), (PMID:23849778)
(MGI:MGI:6284218|PMID:29916806)
(PMID:11153919)
SYSCILIA_CCNET
MGI
PMID:11153919, PMID:18950741, PMID:23849778, PMID:29916806 MGI:MGI:6284218 NCBI chrNW_004955553:1,188,279...1,212,053 JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004955423:24,027,924...24,089,914 JBrowse link
G Dnajb13 DnaJ heat shock protein family (Hsp40) member B13 ISO (MGI:MGI:3806784|PMID:18247331) MGI PMID:18247331 MGI:MGI:3806784 NCBI chrNW_004955414:17,599,549...17,613,724 JBrowse link
G Dnali1 dynein axonemal light intermediate chain 1 ISO (MGI:MGI:3628860|PMID:16496424), (MGI:MGI:6284218|PMID:29916806)
(PMID:23849778), (PMID:26909801), (PMID:31178125)
MGI PMID:16496424, PMID:23849778, PMID:26909801, PMID:29916806, PMID:31178125 MGI:MGI:3628860, MGI:MGI:6284218 NCBI chrNW_004955452:15,367,443...15,375,001 JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 ISO (MGI:MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:MGI:5009180 NCBI chrNW_004955412:6,267,726...6,518,888 JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 ISO (MGI:MGI:5551675|PMID:24183451) UniProtKB PMID:24183451 MGI:MGI:5551675 NCBI chrNW_004955570:1,076,498...1,086,629 JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 ISO (MGI:MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:MGI:5009180 NCBI chrNW_004955441:10,928,577...10,961,194 JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) GO_Central PMID:25830415 NCBI chrNW_004955420:12,515,195...12,528,863 JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1 like ISO (MGI:MGI:6149643|PMID:29487109) MGI PMID:29487109 MGI:MGI:6149643 NCBI chrNW_004955501:895,245...965,626 JBrowse link
G Efhc1 EF-hand domain containing 1 ISO (MGI:MGI:3529636|PMID:15670853) UniProtKB PMID:15670853 MGI:MGI:3529636 NCBI chrNW_004955411:5,624,510...5,676,165 JBrowse link
G Gabarap GABA type A receptor-associated protein ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955467:9,667,938...9,670,067 JBrowse link
G Gas8 growth arrest specific 8 ISO (PMID:16643277), (PMID:26387594) UniProtKB PMID:16643277, PMID:26387594 NCBI chrNW_004955541:3,477,067...3,494,991 JBrowse link
G Gli1 GLI family zinc finger 1 ISO (MGI:MGI:3692156|PMID:16254602) CACAO PMID:16254602 MGI:MGI:3692156 NCBI chrNW_004955458:5,181,761...5,193,500 JBrowse link
G Gli2 GLI family zinc finger 2 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004955459:8,892,917...9,124,672 JBrowse link
G Gli3 GLI family zinc finger 3 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004955460:1,528,457...1,805,584 JBrowse link
G Gnat3 G protein subunit alpha transducin 3 ISO RGD PMID:17021831 RGD:2302145 NCBI chrNW_004955410:5,145,768...5,211,594 JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5553228|PMID:23418020) MGI PMID:20368623, PMID:23418020 MGI:MGI:4460838, MGI:MGI:5553228 NCBI chrNW_004955442:15,625,429...15,719,006 JBrowse link
G Ift57 intraflagellar transport 57 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004955427:8,814,298...8,871,671 JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:MGI:2158985|PMID:11854326), (MGI:MGI:2664063|PMID:11251073), (MGI:MGI:3773480|PMID:18066062), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5544506|PMID:24302887) MGI PMID:11251073, PMID:11854326, PMID:18066062, PMID:20368623, PMID:24302887 MGI:MGI:2158985, MGI:MGI:2664063, MGI:MGI:3773480, MGI:MGI:4460838, MGI:MGI:5544506 NCBI chrNW_004955497:1,338,959...1,454,788 JBrowse link
G Inpp5e inositol polyphosphate-5-phosphatase E ISO (PMID:19668215)
(MGI:MGI:4359555|PMID:19668215)
UniProtKB PMID:19668215 MGI:MGI:4359555 NCBI chrNW_004955513:4,304,483...4,313,087 JBrowse link
G Kif17 kinesin family member 17 ISO (MGI:MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:MGI:4353477 NCBI chrNW_004955452:1,197,839...1,239,209 JBrowse link
G Kif3a kinesin family member 3A ISO RGD PMID:9920666 RGD:1581597 NCBI chrNW_004955408:4,072,823...4,115,975 JBrowse link
G Lca5 lebercilin LCA5 ISO (MGI:MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:MGI:5588761 NCBI chrNW_004955502:7,325,650...7,373,641 JBrowse link
G Mak male germ cell associated kinase ISO (MGI:MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:MGI:5298333 NCBI chrNW_004955465:3,556,733...3,615,126 JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Map4 microtubule associated protein 4 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955420:24,437,492...24,537,410 JBrowse link
G Mapk15 mitogen-activated protein kinase 15 NOT ISO (PMID:29021280) UniProtKB PMID:29021280 NCBI chrNW_004955454:2,413,393...2,420,703 JBrowse link
G Mapt microtubule associated protein tau ISO (MGI:MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:MGI:3821640 NCBI chrNW_004955478:10,222,439...10,271,439 JBrowse link
G Mns1 meiosis specific nuclear structural 1 ISO (MGI:MGI:5318625|PMID:22396656) MGI PMID:22396656 MGI:MGI:5318625 NCBI chrNW_004955450:17,819,812...17,852,157 JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004955501:7,604,934...7,681,947 JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955415:32,794,172...32,807,944 JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955478:4,241,283...4,262,119 JBrowse link
G Prkar2a protein kinase cAMP-dependent type II regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955532:827,112...896,487 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:4461813|PMID:20592197), (MGI:MGI:5588761|PMID:24833722), (MGI:MGI:6194004|PMID:29899041) MGI PMID:14507858, PMID:20368623, PMID:20592197, PMID:24833722, PMID:29899041 MGI:MGI:2676521, MGI:MGI:4460838, MGI:MGI:4461813, MGI:MGI:5588761, MGI:MGI:6194004 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:MGI:4353917|PMID:19657028) UniProtKB PMID:19657028 MGI:MGI:4353917 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:MGI:1933524|PMID:11104772) MGI PMID:11104772 MGI:MGI:1933524 NCBI chrNW_004955550:2,015,319...2,073,627 JBrowse link
G Rpgrip1l RPGRIP1 like ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004955433:11,321,504...11,423,981 JBrowse link
G Rsph4a radial spoke head component 4A ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chrNW_004955436:30,638...43,581 JBrowse link
G Rsph6a radial spoke head 6 homolog A ISO (MGI:MGI:6279049|PMID:30239614) UniProt PMID:30239614 MGI:MGI:6279049 NCBI chrNW_004955574:247,728...264,238 JBrowse link
G Rsph9 radial spoke head component 9 ISO (PMID:26909801)
(MGI:MGI:6451324|PMID:30383886)
GO_Central
UniProt
PMID:26909801, PMID:30383886 MGI:MGI:6451324 NCBI chrNW_004955437:9,437,281...9,448,514 JBrowse link
G Septin2 septin 2 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955542:401,081...444,304 JBrowse link
G Septin7 septin 7 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955460:7,287,452...7,374,747 JBrowse link
G Septin9 septin 9 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955506:4,943,108...5,033,088 JBrowse link
G Spag16 sperm associated antigen 16 ISO (MGI:MGI:3052627|PMID:15328412), (MGI:MGI:3619868|PMID:16382026), (MGI:MGI:3844768|PMID:19305393) MGI PMID:15328412, PMID:16382026, PMID:19305393 MGI:MGI:3052627, MGI:MGI:3619868, MGI:MGI:3844768 NCBI chrNW_004955457:1,543,946...2,492,686 JBrowse link
G Spata7 spermatogenesis associated 7 ISO (PMID:25398945) UniProtKB PMID:25398945 NCBI chrNW_004955438:11,033,089...11,069,178 JBrowse link
G Tctex1d4 Tctex1 domain containing 4 ISO (MGI:MGI:5510909|PMID:23789093) MGI PMID:23789093 MGI:MGI:5510909 NCBI chrNW_004955464:13,417,735...13,419,646 JBrowse link
G Tmem67 transmembrane protein 67 colocalizes_with ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004955417:10,097,488...10,137,959 JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO (MGI:MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:MGI:5298450 NCBI chrNW_004955542:2,264,472...2,301,083 JBrowse link
G Ttc25 tetratricopeptide repeat domain 25 ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chrNW_004955451:16,098,495...16,112,985 JBrowse link
G Ttll10 tubulin tyrosine ligase like 10 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chrNW_004955486:9,576,174...9,589,297 JBrowse link
G Ttll3 tubulin tyrosine ligase like 3 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chrNW_004955561:1,330,378...1,353,217 JBrowse link
G Ttll8 tubulin tyrosine ligase like 8 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chrNW_004955413:33,086,528...33,119,801 JBrowse link
G Tubb4a tubulin beta 4A class IVa ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955495:3,134,181...3,138,725 JBrowse link
G Tulp3 TUB like protein 3 ISO (MGI:MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:MGI:3841503 NCBI chrNW_004955429:18,424,912...18,484,522 JBrowse link
G Wdr11 WD repeat domain 11 ISO (MGI:MGI:6116377|PMID:29263200) UniProt PMID:29263200 MGI:MGI:6116377 NCBI chrNW_004955551:1,733,079...1,788,354 JBrowse link
G Wdr35 WD repeat domain 35 ISO (MGI:MGI:4950635|PMID:21473986) UniProtKB PMID:21473986 MGI:MGI:4950635 NCBI chrNW_004955469:2,484,972...2,546,562 JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah9 dynein axonemal heavy chain 9 ISO (PMID:26909801), (PMID:30471717) GO_Central PMID:26909801, PMID:30471717 NCBI chrNW_004955467:5,357,500...5,677,144 JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah1 dynein axonemal heavy chain 1 ISO (PMID:24360805) SYSCILIA_CCNET PMID:24360805 NCBI chrNW_004955430:2,323,928...2,391,470 JBrowse link
G Dnah7 dynein axonemal heavy chain 7 ISO (PMID:11877439) SYSCILIA_CCNET PMID:11877439 NCBI chrNW_004955403:4,189,887...4,426,405 JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc114 coiled-coil domain containing 114 ISO (PMID:23261303) UniProtKB PMID:23261303 NCBI chrNW_004955559:2,123,941...2,153,192 JBrowse link
G Cfap70 cilia and flagella associated protein 70 ISO (PMID:31621862) UniProt PMID:31621862 NCBI chrNW_004955437:18,424,568...18,480,327 JBrowse link
G Dnah17 dynein axonemal heavy chain 17 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955506:4,042,768...4,161,022 JBrowse link
G Dnah5 dynein axonemal heavy chain 5 ISO (PMID:11062149), (PMID:11788826), (PMID:22499950)
(MGI:MGI:6147712|PMID:27353389)
(PMID:16627867)
SYSCILIA_CCNET
MGI
PMID:11062149, PMID:11788826, PMID:16627867, PMID:22499950, PMID:27353389 MGI:MGI:6147712 NCBI chrNW_004955426:3,105,631...3,406,587 JBrowse link
G Dnah9 dynein axonemal heavy chain 9 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chrNW_004955467:5,357,500...5,677,144 JBrowse link
G Dnai1 dynein axonemal intermediate chain 1 ISO (PMID:11231901), (PMID:16858015) SYSCILIA_CCNET PMID:11231901, PMID:16858015 NCBI chrNW_004955472:1,599,265...1,668,214 JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 ISO (PMID:18950741) SYSCILIA_CCNET PMID:18950741 NCBI chrNW_004955553:1,188,279...1,212,053 JBrowse link
G Dync1i2 dynein cytoplasmic 1 intermediate chain 2 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chrNW_004955449:3,204,839...3,256,059 JBrowse link
G Nme8 NME/NM23 family member 8 ISO (PMID:17360648) SYSCILIA_CCNET PMID:17360648 NCBI chrNW_004955460:5,672,768...5,718,707 JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc25 tetratricopeptide repeat domain 25 ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chrNW_004955451:16,098,495...16,112,985 JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein axonemal heavy chain 11 ISO (MGI:MGI:6120222|PMID:26909801)
(PMID:26909801)
MGI
GO_Central
PMID:26909801 MGI:MGI:6120222 NCBI chrNW_004955410:24,045,333...24,352,626 JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph4a radial spoke head component 4A ISO (MGI:MGI:5882054|PMID:26506310) MGI PMID:26506310 MGI:MGI:5882054 NCBI chrNW_004955436:30,638...43,581 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 11994
    cellular anatomical entity 11905
      organelle 9280
        cilium 575
          ciliary plasm 101
            axoneme + 100
Path 2
Term Annotations click to browse term
  cellular_component 11994
    cellular anatomical entity 11905
      intracellular anatomical structure 10211
        cytoplasm 7880
          cytoplasmic region 182
            plasma membrane bounded cell projection cytoplasm 142
              ciliary plasm 101
                axoneme + 100
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.