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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary plasm
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Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm


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ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYNC2I1 dynein 2 intermediate chain 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:20,810,735...20,859,441
Ensembl chr16:20,810,345...20,859,037
JBrowse link
G DYNC2I2 dynein 2 intermediate chain 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:54,930,039...54,953,752
Ensembl chr 9:54,930,054...54,953,751
JBrowse link
G NEK4 NIMA related kinase 4 ISO RGD PMID:21685204 RGD:13204813 NCBI chr20:37,056,852...37,091,977
Ensembl chr20:37,056,754...37,092,686
JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT88 intraflagellar transport 88 ISO (MGI:MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:MGI:5544506 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector IEA Ensembl GO_REF:0000107 NCBI chr10:62,894,818...63,316,555
Ensembl chr10:62,877,527...63,316,345
JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPAG16 sperm associated antigen 16 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr37:20,782,855...21,690,523
Ensembl chr37:20,782,867...21,690,333
JBrowse link
G SPAG17 sperm associated antigen 17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:55,248,136...55,468,036
Ensembl chr17:55,248,137...55,467,902
JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HYDIN HYDIN axonemal central pair apparatus protein IEA Ensembl GO_REF:0000107 NCBI chr 5:76,743,872...77,104,888
Ensembl chr 5:76,743,972...77,045,455
JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC65 coiled-coil domain containing 65 IEA InterPro GO_REF:0000002 NCBI chr27:5,639,886...5,650,140
Ensembl chr27:5,639,893...5,650,109
JBrowse link
G CFAP94 cilia and flagella associated protein 94 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chr27:22,309,705...22,369,052
Ensembl chr27:22,303,849...22,369,051
JBrowse link
G DNAH1 dynein axonemal heavy chain 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr20:37,364,836...37,441,486
Ensembl chr20:37,364,842...37,465,807
JBrowse link
G DNAH12 dynein axonemal heavy chain 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:32,899,264...33,109,582
Ensembl chr20:32,900,142...33,110,339
JBrowse link
G DNAH5 dynein axonemal heavy chain 5 ISO (MGI:MGI:2178772|PMID:11912187) MGI PMID:11912187 MGI:MGI:2178772 NCBI chr34:816,088...1,040,052
Ensembl chr34:805,455...1,038,273
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 ISO (PMID:11153919) MGI PMID:11153919 NCBI chr 9:6,085,021...6,114,187
Ensembl chr 9:6,085,459...6,114,351
JBrowse link
G DNAI3 dynein axonemal intermediate chain 3 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chr 6:62,832,281...62,914,239
Ensembl chr 6:62,844,626...62,914,196
JBrowse link
G DNAI4 dynein axonemal intermediate chain 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:43,590,200...43,690,293
Ensembl chr 5:43,590,239...43,689,339
JBrowse link
G DRC1 dynein regulatory complex subunit 1 IEA InterPro GO_REF:0000002 NCBI chr17:20,479,290...20,517,960
Ensembl chr17:20,431,176...20,517,753
JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 ISO PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chr24:35,648,650...35,744,815
Ensembl chr24:35,648,431...35,744,584
JBrowse link
G CEP162 centrosomal protein 162 IEA Ensembl GO_REF:0000107 NCBI chr12:44,387,216...44,483,809
Ensembl chr12:44,387,330...44,483,060
JBrowse link
G RPGRIP1L RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
JBrowse link
G SAXO1 stabilizer of axonemal microtubules 1 IEA Ensembl GO_REF:0000107 NCBI chr11:38,771,201...38,873,442
Ensembl chr11:38,771,209...38,871,709
JBrowse link
G SAXO2 stabilizer of axonemal microtubules 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:55,680,471...55,720,384
Ensembl chr 3:55,701,985...55,720,392
JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK8 adenylate kinase 8 IEA Ensembl GO_REF:0000107 NCBI chr 9:51,470,688...51,598,787
Ensembl chr 9:51,470,756...51,598,786
JBrowse link
G AKAP14 A-kinase anchoring protein 14 ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chr  X:91,900,154...91,927,629 JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 IEA Ensembl GO_REF:0000107 NCBI chr18:42,903,815...43,073,918
Ensembl chr18:42,932,513...43,072,827
JBrowse link
G ARL13B ADP ribosylation factor like GTPase 13B IEA Ensembl GO_REF:0000107 NCBI chr33:1,698,360...1,762,846
Ensembl chr33:1,698,363...1,761,641
JBrowse link
G ARL3 ADP ribosylation factor like GTPase 3 IEA Ensembl GO_REF:0000107 NCBI chr28:15,152,762...15,189,043
Ensembl chr28:15,142,485...15,188,903
JBrowse link
G ARL6 ADP ribosylation factor like GTPase 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:4,797,944...4,857,566
Ensembl chr33:4,800,917...4,839,635
JBrowse link
G ARMC4 armadillo repeat containing 4 ISO (PMID:23849778), (PMID:24203976) SYSCILIA_CCNET PMID:23849778, PMID:24203976 NCBI chr 2:18,177,141...18,322,316 JBrowse link
G ATG14 autophagy related 14 IEA Ensembl GO_REF:0000107 NCBI chr 8:31,199,097...31,234,200
Ensembl chr 8:31,201,709...31,234,217
JBrowse link
G ATG16L1 autophagy related 16 like 1 IEA Ensembl GO_REF:0000107 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672
JBrowse link
G ATG5 autophagy related 5 IEA Ensembl GO_REF:0000107 NCBI chr12:63,565,859...63,692,383
Ensembl chr12:63,567,568...63,683,485
JBrowse link
G ATG7 autophagy related 7 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800
JBrowse link
G BBS1 Bardet-Biedl syndrome 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:50,816,126...50,835,354 JBrowse link
G BBS5 Bardet-Biedl syndrome 5 IEA Ensembl GO_REF:0000107 NCBI chr36:14,206,917...14,233,726 JBrowse link
G BBS7 Bardet-Biedl syndrome 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:18,280,487...18,319,128
Ensembl chr19:18,280,520...18,315,825
JBrowse link
G CCDC114 coiled-coil domain containing 114 ISO (PMID:25192045) SYSCILIA_CCNET PMID:25192045 NCBI chr 1:107,910,313...107,936,963
Ensembl chr 1:107,905,070...107,936,963
JBrowse link
G CCDC151 coiled-coil domain containing 151 IEA Ensembl GO_REF:0000107 NCBI chr20:49,917,183...49,926,417
Ensembl chr20:49,917,350...49,926,424
JBrowse link
G CCDC39 coiled-coil domain containing 39 ISS
IEA
IBA
(PMID:21873635) UniProtKB
Ensembl
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000024, GO_REF:0000107 NCBI chr34:13,915,763...13,959,574
Ensembl chr34:13,905,434...13,959,340
JBrowse link
G CCDC40 coiled-coil domain containing 40 IEA Ensembl GO_REF:0000107 NCBI chr 9:1,616,029...1,656,043
Ensembl chr 9:1,601,121...1,656,597
JBrowse link
G CCDC63 coiled-coil domain containing 63 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:8,587,306...8,623,558
Ensembl chr26:8,587,784...8,652,946
JBrowse link
G CCDC65 coiled-coil domain containing 65 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:5,639,886...5,650,140
Ensembl chr27:5,639,893...5,650,109
JBrowse link
G CCSAP centriole, cilia and spindle associated protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:9,878,171...9,896,962
Ensembl chr 4:9,878,186...9,893,572
JBrowse link
G CENPF centromere protein F IEA Ensembl GO_REF:0000107 NCBI chr 7:12,558,455...12,618,637
Ensembl chr 7:12,555,143...12,617,996
JBrowse link
G CFAP36 cilia and flagella associated protein 36 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:56,373,995...56,403,121
Ensembl chr10:56,373,996...56,403,120
JBrowse link
G CFAP43 cilia and flagella associated protein 43 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:16,443,417...16,555,027
Ensembl chr28:16,443,389...16,555,792
JBrowse link
G CFAP70 cilia and flagella associated protein 70 ISO (MGI:MGI:6383288|PMID:30158508) UniProt PMID:30158508 MGI:MGI:6383288 NCBI chr 4:23,830,335...23,926,922
Ensembl chr 4:23,830,336...23,924,350
JBrowse link
G CLUAP1 clusterin associated protein 1 colocalizes_with ISO (MGI:MGI:5488668|PMID:23351563) MGI PMID:23351563 MGI:MGI:5488668 NCBI chr 6:37,708,258...37,746,361
Ensembl chr 6:37,708,089...37,746,398
JBrowse link
G CTSH cathepsin H ISO RGD PMID:12838426 RGD:5686399 NCBI chr 3:58,103,284...58,113,958
Ensembl chr 3:58,103,291...58,113,718
JBrowse link
G DCDC2 doublecortin domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:22,264,484...22,422,769
Ensembl chr35:22,266,282...22,422,776
JBrowse link
G DCDC2C doublecortin domain containing 2C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:2,216,402...2,310,398
Ensembl chr17:2,216,391...2,310,174
JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:68,184,532...68,205,651
Ensembl chr 5:68,184,532...68,205,656
JBrowse link
G DNAH1 dynein axonemal heavy chain 1 ISO (PMID:24360805) UniProtKB PMID:24360805 NCBI chr20:37,364,836...37,441,486
Ensembl chr20:37,364,842...37,465,807
JBrowse link
G DNAH11 dynein axonemal heavy chain 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:35,468,080...35,784,621
Ensembl chr14:35,468,154...35,784,806
JBrowse link
G DNAH17 dynein axonemal heavy chain 17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:2,713,236...2,809,101
Ensembl chr 9:2,715,077...2,809,101
JBrowse link
G DNAH2 dynein axonemal heavy chain 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:32,600,902...32,688,560
Ensembl chr 5:32,602,553...32,688,559
JBrowse link
G DNAH5 dynein axonemal heavy chain 5 ISO (MGI:MGI:5551687|PMID:23849778), (MGI:MGI:5607335|PMID:25192045), (MGI:MGI:6284218|PMID:29916806)
(PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
MGI PMID:15750039, PMID:16492982, PMID:18950741, PMID:23849778, PMID:24203976, PMID:25192045, PMID:26387594, PMID:26909801, PMID:29916806, PMID:31178125 MGI:MGI:5551687, MGI:MGI:5607335, MGI:MGI:6284218 NCBI chr34:816,088...1,040,052
Ensembl chr34:805,455...1,038,273
JBrowse link
G DNAH8 dynein axonemal heavy chain 8 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chr12:7,617,638...7,972,842
Ensembl chr12:7,617,592...7,972,842
JBrowse link
G DNAH9 dynein axonemal heavy chain 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:35,730,394...36,060,154
Ensembl chr 5:35,730,394...36,058,945
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 ISO (PMID:18950741), (PMID:23849778)
(MGI:MGI:6284218|PMID:29916806)
(PMID:11153919)
SYSCILIA_CCNET
MGI
PMID:11153919, PMID:18950741, PMID:23849778, PMID:29916806 MGI:MGI:6284218 NCBI chr 9:6,085,021...6,114,187
Ensembl chr 9:6,085,459...6,114,351
JBrowse link
G DNAI4 dynein axonemal intermediate chain 4 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chr 5:43,590,200...43,690,293
Ensembl chr 5:43,590,239...43,689,339
JBrowse link
G DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 IEA Ensembl GO_REF:0000107 NCBI chr21:24,314,242...24,326,605
Ensembl chr21:24,314,248...24,338,253
JBrowse link
G DNALI1 dynein axonemal light intermediate chain 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr15:4,916,747...4,922,893
Ensembl chr15:4,916,756...4,922,813
JBrowse link
G DRC1 dynein regulatory complex subunit 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:20,479,290...20,517,960
Ensembl chr17:20,431,176...20,517,753
JBrowse link
G DRC3 dynein regulatory complex subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:41,499,810...41,534,641
Ensembl chr 5:41,499,815...41,534,549
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 5:28,566,604...28,727,416
Ensembl chr 5:28,388,664...28,727,334
JBrowse link
G DYNC2I2 dynein 2 intermediate chain 2 ISO (MGI:MGI:5551675|PMID:24183451) UniProtKB PMID:24183451 MGI:MGI:5551675 NCBI chr 9:54,930,039...54,953,752
Ensembl chr 9:54,930,054...54,953,751
JBrowse link
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:46,231,433...46,270,102
Ensembl chr10:46,231,460...46,290,382
JBrowse link
G DYNLT2B dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) GO_Central PMID:25830415 NCBI chr33:29,414,484...29,430,439 JBrowse link
G DZIP1L DAZ interacting zinc finger protein 1 like ISO (MGI:MGI:6149643|PMID:29487109) MGI PMID:29487109 MGI:MGI:6149643 NCBI chr23:34,285,223...34,334,957
Ensembl chr23:34,285,864...34,331,680
JBrowse link
G EFHC1 EF-hand domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:20,068,287...20,131,621
Ensembl chr12:20,067,881...20,131,619
JBrowse link
G EFHC2 EF-hand domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:38,133,964...38,297,285
Ensembl chr  X:38,134,891...38,329,080
JBrowse link
G GABARAP GABA type A receptor-associated protein IEA Ensembl GO_REF:0000107 NCBI chr 5:32,207,879...32,209,976
Ensembl chr 5:32,207,887...32,209,908
JBrowse link
G GAS8 growth arrest specific 8 IEA Ensembl GO_REF:0000107 NCBI chr 5:63,589,196...63,609,014
Ensembl chr 5:63,573,941...63,619,476
JBrowse link
G GLI1 GLI family zinc finger 1 IEA Ensembl GO_REF:0000107 NCBI chr10:1,565,306...1,575,971
Ensembl chr10:1,565,244...1,575,982
JBrowse link
G GLI2 GLI family zinc finger 2 IEA Ensembl GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G GNAT3 G protein subunit alpha transducin 3 ISO RGD PMID:17021831 RGD:2302145 NCBI chr18:20,174,210...20,230,228
Ensembl chr18:20,174,271...20,230,271
JBrowse link
G IFT140 intraflagellar transport 140 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
JBrowse link
G IFT172 intraflagellar transport 172 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796
JBrowse link
G IFT57 intraflagellar transport 57 IEA Ensembl GO_REF:0000107 NCBI chr33:13,432,902...13,486,692
Ensembl chr33:13,410,544...13,486,612
JBrowse link
G IFT88 intraflagellar transport 88 ISO (MGI:MGI:2158985|PMID:11854326), (MGI:MGI:2664063|PMID:11251073), (MGI:MGI:3773480|PMID:18066062), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5544506|PMID:24302887) MGI PMID:11251073, PMID:11854326, PMID:18066062, PMID:20368623, PMID:24302887 MGI:MGI:2158985, MGI:MGI:2664063, MGI:MGI:3773480, MGI:MGI:4460838, MGI:MGI:5544506 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G INPP5E inositol polyphosphate-5-phosphatase E IEA Ensembl GO_REF:0000107 NCBI chr 9:49,061,014...49,071,474
Ensembl chr 9:49,061,968...49,070,191
JBrowse link
G KIF17 kinesin family member 17 IEA Ensembl GO_REF:0000107 NCBI chr 2:78,224,838...78,266,612
Ensembl chr 2:78,224,461...78,266,610
JBrowse link
G KIF19 kinesin family member 19 IEA GOC GO_REF:0000108 NCBI chr 9:6,052,837...6,079,409
Ensembl chr 9:6,052,840...6,079,295
JBrowse link
G KIF3A kinesin family member 3A ISO RGD PMID:9920666 RGD:1581597 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090
JBrowse link
G KIFAP3 kinesin associated protein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:28,581,855...28,739,327
Ensembl chr 7:28,593,425...28,739,272
JBrowse link
G LCA5 lebercilin LCA5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:40,443,759...40,527,300
Ensembl chr12:40,444,617...40,527,292
JBrowse link
G MAK male germ cell associated kinase IEA Ensembl GO_REF:0000107 NCBI chr35:10,474,081...10,530,951
Ensembl chr35:10,475,179...10,525,089
JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chr 5:65,669,553...65,683,445 JBrowse link
G MAP4 microtubule associated protein 4 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr20:40,896,920...41,101,626
Ensembl chr20:40,896,772...41,100,001
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 NOT ISO (PMID:29021280) UniProtKB PMID:29021280 NCBI chr13:37,317,061...37,322,792
Ensembl chr13:37,316,424...37,322,792
JBrowse link
G MAPT microtubule associated protein tau ISO (MGI:MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:MGI:3821640 NCBI chr 9:9,572,174...9,674,082
Ensembl chr 9:9,570,557...9,674,349
JBrowse link
G MNS1 meiosis specific nuclear structural 1 IEA Ensembl GO_REF:0000107 NCBI chr30:21,648,709...21,682,650
Ensembl chr30:21,649,008...21,682,576
JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 IEA Ensembl GO_REF:0000107 NCBI chr23:27,902,500...27,973,609
Ensembl chr23:27,902,840...27,971,892
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha colocalizes_with ISO
IEA
(PMID:12475942) UniProtKB
Ensembl
PMID:12475942 GO_REF:0000107 NCBI chr20:48,416,730...48,425,237
Ensembl chr20:48,409,045...48,426,669
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha colocalizes_with ISO
IEA
(PMID:12475942) UniProtKB
Ensembl
PMID:12475942 GO_REF:0000107 NCBI chr 9:15,180,940...15,203,035
Ensembl chr 9:15,181,393...15,200,683
JBrowse link
G PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha colocalizes_with IEA
ISO
(PMID:12475942) Ensembl
UniProtKB
PMID:12475942 GO_REF:0000107 NCBI chr20:40,277,655...40,388,156
Ensembl chr20:40,277,906...40,384,633
JBrowse link
G RP1 RP1 axonemal microtubule associated IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009
JBrowse link
G RP1L1 RP1 like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:27,317,102...27,332,075
Ensembl chr25:27,325,658...27,330,556
JBrowse link
G RPGRIP1 RPGR interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr15:18,316,887...18,388,724
Ensembl chr15:18,316,887...18,387,735
JBrowse link
G RPGRIP1L RPGRIP1 like IEA Ensembl GO_REF:0000107 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
JBrowse link
G RSPH4A radial spoke head component 4A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:57,063,752...57,079,289
Ensembl chr 1:57,064,624...57,077,537
JBrowse link
G RSPH6A radial spoke head 6 homolog A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:109,795,813...109,814,590
Ensembl chr 1:109,795,580...109,814,590
JBrowse link
G RSPH9 radial spoke head component 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:12,093,016...12,105,721
Ensembl chr12:12,096,568...12,105,721
JBrowse link
G SEPTIN2 septin 2 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr25:51,296,486...51,330,508
Ensembl chr25:51,296,554...51,328,616
JBrowse link
G SEPTIN7 septin 7 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr14:47,395,704...47,494,873
Ensembl chr14:47,395,603...47,494,385
JBrowse link
G SEPTIN9 septin 9 IEA Ensembl GO_REF:0000107 NCBI chr 9:3,495,764...3,571,755
Ensembl chr 9:3,448,793...3,616,732
JBrowse link
G SPAG16 sperm associated antigen 16 ISO (MGI:MGI:3052627|PMID:15328412), (MGI:MGI:3619868|PMID:16382026), (MGI:MGI:3844768|PMID:19305393) MGI PMID:15328412, PMID:16382026, PMID:19305393 MGI:MGI:3052627, MGI:MGI:3619868, MGI:MGI:3844768 NCBI chr37:20,782,855...21,690,523
Ensembl chr37:20,782,867...21,690,333
JBrowse link
G SPATA4 spermatogenesis associated 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:53,358,359...53,369,569
Ensembl chr16:53,358,371...53,369,452
JBrowse link
G SPATA7 spermatogenesis associated 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:59,658,295...59,697,409
Ensembl chr 8:59,658,365...59,697,318
JBrowse link
G SPEF1 sperm flagellar 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:17,572,457...17,580,006
Ensembl chr24:17,574,741...17,578,439
JBrowse link
G TCTEX1D4 Tctex1 domain containing 4 IEA Ensembl GO_REF:0000107 NCBI chr15:15,516,950...15,519,137
Ensembl chr15:15,518,369...15,519,028
JBrowse link
G TMEM67 transmembrane protein 67 colocalizes_with ISO RGD PMID:23516626 RGD:11535084 NCBI chr29:38,655,531...38,715,774
Ensembl chr29:38,654,733...38,720,559
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr25:48,782,448...48,836,993
Ensembl chr25:48,782,463...48,834,374
JBrowse link
G TTC25 tetratricopeptide repeat domain 25 ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chr 9:20,897,814...20,921,182
Ensembl chr 9:20,897,976...20,921,441
JBrowse link
G TTLL10 tubulin tyrosine ligase like 10 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chr 5:56,364,247...56,390,899
Ensembl chr 5:56,336,884...56,388,693
JBrowse link
G TTLL3 tubulin tyrosine ligase like 3 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chr20:8,414,289...8,439,071 JBrowse link
G TTLL8 tubulin tyrosine ligase like 8 IEA Ensembl GO_REF:0000107 NCBI chr10:17,165,586...17,237,608
Ensembl chr10:17,164,294...17,213,924
JBrowse link
G TUBB4A tubulin beta 4A class IVa IEA Ensembl GO_REF:0000107 NCBI chr20:53,697,643...53,702,671
Ensembl chr20:53,697,639...53,702,349
JBrowse link
G TULP3 TUB like protein 3 IEA Ensembl GO_REF:0000107 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
G WDR11 WD repeat domain 11 ISO (MGI:MGI:6116377|PMID:29263200) UniProt PMID:29263200 MGI:MGI:6116377 NCBI chr28:30,769,223...30,828,628
Ensembl chr28:30,769,219...30,828,049
JBrowse link
G WDR35 WD repeat domain 35 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:14,976,662...15,034,918
Ensembl chr17:14,977,457...15,034,748
JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH9 dynein axonemal heavy chain 9 IEA Ensembl GO_REF:0000107 NCBI chr 5:35,730,394...36,060,154
Ensembl chr 5:35,730,394...36,058,945
JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH1 dynein axonemal heavy chain 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:37,364,836...37,441,486
Ensembl chr20:37,364,842...37,465,807
JBrowse link
G DNAH12 dynein axonemal heavy chain 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:32,899,264...33,109,582
Ensembl chr20:32,900,142...33,110,339
JBrowse link
G DNAH7 dynein axonemal heavy chain 7 IEA Ensembl GO_REF:0000107 NCBI chr37:5,521,106...5,760,383
Ensembl chr37:5,521,147...5,760,277
JBrowse link
G DNAI3 dynein axonemal intermediate chain 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:62,832,281...62,914,239
Ensembl chr 6:62,844,626...62,914,196
JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC103 coiled-coil domain containing 103 IEA InterPro GO_REF:0000002 NCBI chr 9:18,581,544...18,585,939
Ensembl chr 9:18,582,468...18,584,612
JBrowse link
G CCDC114 coiled-coil domain containing 114 IEA Ensembl GO_REF:0000107 NCBI chr 1:107,910,313...107,936,963
Ensembl chr 1:107,905,070...107,936,963
JBrowse link
G CFAP70 cilia and flagella associated protein 70 IEA Ensembl GO_REF:0000107 NCBI chr 4:23,830,335...23,926,922
Ensembl chr 4:23,830,336...23,924,350
JBrowse link
G DNAH17 dynein axonemal heavy chain 17 IEA Ensembl GO_REF:0000107 NCBI chr 9:2,713,236...2,809,101
Ensembl chr 9:2,715,077...2,809,101
JBrowse link
G DNAH5 dynein axonemal heavy chain 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:816,088...1,040,052
Ensembl chr34:805,455...1,038,273
JBrowse link
G DNAH9 dynein axonemal heavy chain 9 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chr 5:35,730,394...36,060,154
Ensembl chr 5:35,730,394...36,058,945
JBrowse link
G DNAI1 dynein axonemal intermediate chain 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:51,080,080...51,205,381
Ensembl chr11:51,106,370...51,237,467
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:6,085,021...6,114,187
Ensembl chr 9:6,085,459...6,114,351
JBrowse link
G DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chr36:16,103,480...16,163,232
Ensembl chr36:16,103,751...16,162,215
JBrowse link
G NME8 NME/NM23 family member 8 IEA Ensembl GO_REF:0000107 NCBI chr18:12,038,369...12,088,544
Ensembl chr18:12,038,450...12,087,626
JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TTC25 tetratricopeptide repeat domain 25 IEA Ensembl GO_REF:0000107 NCBI chr 9:20,897,814...20,921,182
Ensembl chr 9:20,897,976...20,921,441
JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH11 dynein axonemal heavy chain 11 IEA Ensembl GO_REF:0000107 NCBI chr14:35,468,080...35,784,621
Ensembl chr14:35,468,154...35,784,806
JBrowse link
radial spoke term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RSPH4A radial spoke head component 4A IEA InterPro GO_REF:0000002 NCBI chr 1:57,063,752...57,079,289
Ensembl chr 1:57,064,624...57,077,537
JBrowse link
G RSPH6A radial spoke head 6 homolog A IEA InterPro GO_REF:0000002 NCBI chr 1:109,795,813...109,814,590
Ensembl chr 1:109,795,580...109,814,590
JBrowse link
G RSPH9 radial spoke head component 9 IEA InterPro GO_REF:0000002 NCBI chr12:12,093,016...12,105,721
Ensembl chr12:12,096,568...12,105,721
JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RSPH4A radial spoke head component 4A IEA Ensembl GO_REF:0000107 NCBI chr 1:57,063,752...57,079,289
Ensembl chr 1:57,064,624...57,077,537
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16513
    cellular anatomical entity 16417
      organelle 11545
        cilium 639
          ciliary plasm 118
            axoneme + 116
Path 2
Term Annotations click to browse term
  cellular_component 16513
    cellular anatomical entity 16417
      intracellular anatomical structure 12746
        cytoplasm 9791
          cytoplasmic region 255
            plasma membrane bounded cell projection cytoplasm 203
              ciliary plasm 118
                axoneme + 116
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.