Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary plasm
go back to main search page
Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm


show annotations for term's descendants           Sort by:
 
ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nek4 NIMA related kinase 4 ISO RGD PMID:21685204 RGD:13204813 NCBI chrNW_004936473:3,499,858...3,527,918 JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift88 intraflagellar transport 88 ISO (MGI:MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:MGI:5544506 NCBI chrNW_004936720:1,041,216...1,168,725 JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO (MGI:MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:MGI:5544506 NCBI chrNW_004936491:8,238,644...8,749,172 JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101966632 sperm-associated antigen 16 protein ISO (MGI:MGI:2389554|PMID:12391165)
(MGI:MGI:3766863|PMID:17699735)
MGI PMID:12391165, PMID:17699735 MGI:MGI:2389554, MGI:MGI:3766863 NCBI chrNW_004936586:3,264,953...3,407,823 JBrowse link
G Spag17 sperm associated antigen 17 ISO (MGI:MGI:3807761|PMID:15827353)
(MGI:MGI:5576118|PMID:23418344)
MGI PMID:15827353, PMID:23418344 MGI:MGI:3807761, MGI:MGI:5576118 NCBI chrNW_004936627:3,002,893...3,201,294 JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin HYDIN axonemal central pair apparatus protein ISO (MGI:MGI:3793384|PMID:18250199) MGI PMID:18250199 MGI:MGI:3793384 NCBI chrNW_004936475:22,523,962...22,836,355 JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap94 cilia and flagella associated protein 94 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004936548:2,123,248...2,197,245 JBrowse link
G Dnah5 dynein axonemal heavy chain 5 ISO (MGI:MGI:2178772|PMID:11912187) MGI PMID:11912187 MGI:MGI:2178772 NCBI chrNW_004936665:2,267,272...2,545,765 JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 ISO (PMID:11153919) MGI PMID:11153919 NCBI chrNW_004936655:163,565...188,431 JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004936608:575,520...644,145 JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004936591:4,642,762...4,750,006 JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 ISO PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chrNW_004936514:5,172,752...5,262,823 JBrowse link
G Cep162 centrosomal protein 162 ISO (PMID:23644468) UniProtKB PMID:23644468 NCBI chrNW_004936510:6,793,695...6,874,600 JBrowse link
G Rpgrip1l RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chrNW_004936475:6,219,187...6,321,612 JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 ISO (PMID:25673876) UniProtKB PMID:25673876 NCBI chrNW_004936652:885,616...915,113 JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 ISO (MGI:MGI:5646278|PMID:24740601) MGI PMID:24740601 MGI:MGI:5646278 NCBI chrNW_004936487:19,212,155...19,321,601 JBrowse link
G Akap14 A-kinase anchoring protein 14 ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004936479:10,051,669...10,055,518 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004936562:2,493,823...2,676,868 JBrowse link
G Arl13b ADP ribosylation factor like GTPase 13B ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004936666:115,964...179,639 JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 ISO (MGI:MGI:5925653|PMID:26455799) UniProtKB PMID:26455799 MGI:MGI:5925653 NCBI chrNW_004936600:3,190,212...3,229,831 JBrowse link
G Armc4 armadillo repeat containing 4 ISO (PMID:23849778), (PMID:24203976) SYSCILIA_CCNET PMID:23849778, PMID:24203976 NCBI chrNW_004936613:2,155,624...2,316,168 JBrowse link
G Atg14 autophagy related 14 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004936495:155,709...195,860 JBrowse link
G Atg16l1 autophagy related 16 like 1 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004936525:3,973,574...4,010,442 JBrowse link
G Atg5 autophagy related 5 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004936564:2,759,085...2,885,394 JBrowse link
G Atg7 autophagy related 7 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004936602:1,938,720...2,179,239 JBrowse link
G Bbs5 Bardet-Biedl syndrome 5 ISO (MGI:MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:MGI:5588761 NCBI chrNW_004936509:25,263...45,113 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO (MGI:MGI:5492028|PMID:22302990) MGI PMID:22302990 MGI:MGI:5492028 NCBI chrNW_004936662:1,081,237...1,116,719 JBrowse link
G Ccdc114 coiled-coil domain containing 114 ISO (PMID:25192045) SYSCILIA_CCNET PMID:25192045 NCBI chrNW_004936664:2,439,434...2,464,878 JBrowse link
G Ccdc151 coiled-coil domain containing 151 ISO (PMID:25192045) UniProtKB PMID:25192045 NCBI chrNW_004936659:1,491,598...1,501,245 JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:21131972), (PMID:21131974), (PMID:26387594) UniProtKB PMID:21131972, PMID:21131974, PMID:26387594 NCBI chrNW_004936566:2,610,756...2,663,657 JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chrNW_004936594:4,075,105...4,124,850 JBrowse link
G Ccsap centriole, cilia and spindle associated protein ISO (PMID:22493317) UniProtKB PMID:22493317 NCBI chrNW_004936484:20,271,834...20,277,945 JBrowse link
G Cenpf centromere protein F ISO (MGI:MGI:5694347|PMID:25564561) MGI PMID:25564561 MGI:MGI:5694347 NCBI chrNW_004936628:3,642,281...3,695,262 JBrowse link
G Cfap43 cilia and flagella associated protein 43 ISO (MGI:MGI:6402702|PMID:31884020) MGI PMID:31884020 MGI:MGI:6402702 NCBI chrNW_004936600:1,954,987...2,042,834 JBrowse link
G Cfap70 cilia and flagella associated protein 70 ISO (MGI:MGI:6383288|PMID:30158508) UniProt PMID:30158508 MGI:MGI:6383288 NCBI chrNW_004936521:5,680,846...5,785,818 JBrowse link
G Cluap1 clusterin associated protein 1 colocalizes_with ISO (MGI:MGI:5488668|PMID:23351563) MGI PMID:23351563 MGI:MGI:5488668 NCBI chrNW_004936694:779,399...810,534 JBrowse link
G Ctsh cathepsin H ISO RGD PMID:12838426 RGD:5686399 NCBI chrNW_004936471:37,135,200...37,156,081 JBrowse link
G Dcdc2 doublecortin domain containing 2 ISO (PMID:25557784), (PMID:27319779) UniProtKB PMID:25557784, PMID:27319779 NCBI chrNW_004936671:605,114...736,217 JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 ISO (PMID:18385425) UniProtKB PMID:18385425 NCBI chrNW_004936641:3,656,331...3,674,907 JBrowse link
G Dnah1 dynein axonemal heavy chain 1 ISO (PMID:24360805) UniProtKB PMID:24360805 NCBI chrNW_004936473:3,170,060...3,238,608 JBrowse link
G Dnah11 dynein axonemal heavy chain 11 ISO (MGI:MGI:6120222|PMID:26909801)
(PMID:31178125)
MGI
UniProt
PMID:26909801, PMID:31178125 MGI:MGI:6120222 NCBI chrNW_004936546:7,370,180...7,681,835 JBrowse link
G Dnah17 dynein axonemal heavy chain 17 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004936594:2,987,744...3,079,553 JBrowse link
G Dnah2 dynein axonemal heavy chain 2 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004936595:970,004...1,076,582 JBrowse link
G Dnah5 dynein axonemal heavy chain 5 ISO (PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
(MGI:MGI:5551687|PMID:23849778), (MGI:MGI:5607335|PMID:25192045), (MGI:MGI:6284218|PMID:29916806)
MGI PMID:15750039, PMID:16492982, PMID:18950741, PMID:23849778, PMID:24203976, PMID:25192045, PMID:26387594, PMID:26909801, PMID:29916806, PMID:31178125 MGI:MGI:5551687, MGI:MGI:5607335, MGI:MGI:6284218 NCBI chrNW_004936665:2,267,272...2,545,765 JBrowse link
G Dnah8 dynein axonemal heavy chain 8 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004936476:20,592,440...20,888,692 JBrowse link
G Dnah9 dynein axonemal heavy chain 9 ISO (PMID:11104725), (PMID:11839535), (PMID:15750039), (PMID:18950741), (PMID:23849778), (PMID:31178125) SYSCILIA_CCNET PMID:11104725, PMID:11839535, PMID:15750039, PMID:18950741, PMID:23849778, PMID:31178125 NCBI chrNW_004936595:4,338,831...4,671,178 JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 ISO (PMID:18950741), (PMID:23849778)
(PMID:11153919)
(MGI:MGI:6284218|PMID:29916806)
SYSCILIA_CCNET
MGI
PMID:11153919, PMID:18950741, PMID:23849778, PMID:29916806 MGI:MGI:6284218 NCBI chrNW_004936655:163,565...188,431 JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 ISO (MGI:MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:MGI:6436377 NCBI chrNW_004936591:4,642,762...4,750,006 JBrowse link
G Dnajb13 DnaJ heat shock protein family (Hsp40) member B13 ISO (MGI:MGI:3806784|PMID:18247331) MGI PMID:18247331 MGI:MGI:3806784 NCBI chrNW_004936498:3,042,151...3,055,966 JBrowse link
G Dnali1 dynein axonemal light intermediate chain 1 ISO (MGI:MGI:3628860|PMID:16496424), (MGI:MGI:6284218|PMID:29916806)
(PMID:23849778), (PMID:26909801), (PMID:31178125)
MGI PMID:16496424, PMID:23849778, PMID:26909801, PMID:29916806, PMID:31178125 MGI:MGI:3628860, MGI:MGI:6284218 NCBI chrNW_004936474:19,779,731...19,787,860 JBrowse link
G Drc3 dynein regulatory complex subunit 3 ISO (PMID:26387594) MGI PMID:26387594 NCBI chrNW_004936741:1,555,981...1,595,077 JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 ISO (MGI:MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:MGI:5009180 NCBI chrNW_004936551:4,584,438...4,913,829 JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 ISO (MGI:MGI:5551675|PMID:24183451) UniProtKB PMID:24183451 MGI:MGI:5551675 NCBI chrNW_004936487:16,142,659...16,157,929 JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 ISO (MGI:MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:MGI:5009180 NCBI chrNW_004936508:8,119,733...8,149,022 JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) GO_Central PMID:25830415 NCBI chrNW_004936784:940,300...954,959 JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1 like ISO (MGI:MGI:6149643|PMID:29487109) MGI PMID:29487109 MGI:MGI:6149643 NCBI chrNW_004936540:437,638...469,945 JBrowse link
G Efhc1 EF-hand domain containing 1 ISO (MGI:MGI:3529636|PMID:15670853) UniProtKB PMID:15670853 MGI:MGI:3529636 NCBI chrNW_004936476:8,347,907...8,401,224 JBrowse link
G Gabarap GABA type A receptor-associated protein ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004936595:534,042...536,289 JBrowse link
G Gas8 growth arrest specific 8 ISO (PMID:16643277), (PMID:26387594) UniProtKB PMID:16643277, PMID:26387594 NCBI chrNW_004936641:92,893...109,006 JBrowse link
G Gli1 GLI family zinc finger 1 ISO (MGI:MGI:3692156|PMID:16254602) CACAO PMID:16254602 MGI:MGI:3692156 NCBI chrNW_004936646:1,622,308...1,629,787 JBrowse link
G Gli2 GLI family zinc finger 2 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004936469:49,616,552...49,788,760 JBrowse link
G Gli3 GLI family zinc finger 3 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004936478:17,129,922...17,403,630 JBrowse link
G Gnat3 G protein subunit alpha transducin 3 ISO RGD PMID:17021831 RGD:2302145 NCBI chrNW_004936810:639,500...679,678 JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5553228|PMID:23418020) MGI PMID:20368623, PMID:23418020 MGI:MGI:4460838, MGI:MGI:5553228 NCBI chrNW_004936694:2,344,448...2,419,396 JBrowse link
G Ift57 intraflagellar transport 57 ISO (MGI:MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:MGI:4888042 NCBI chrNW_004936645:1,471,393...1,524,193 JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:MGI:2158985|PMID:11854326), (MGI:MGI:2664063|PMID:11251073), (MGI:MGI:3773480|PMID:18066062), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5544506|PMID:24302887) MGI PMID:11251073, PMID:11854326, PMID:18066062, PMID:20368623, PMID:24302887 MGI:MGI:2158985, MGI:MGI:2664063, MGI:MGI:3773480, MGI:MGI:4460838, MGI:MGI:5544506 NCBI chrNW_004936720:1,041,216...1,168,725 JBrowse link
G Inpp5e inositol polyphosphate-5-phosphatase E ISO (MGI:MGI:4359555|PMID:19668215)
(PMID:19668215)
UniProtKB PMID:19668215 MGI:MGI:4359555 NCBI chrNW_004936669:1,377,005...1,385,287 JBrowse link
G Kif17 kinesin family member 17 ISO (MGI:MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:MGI:4353477 NCBI chrNW_004936474:6,598,641...6,642,491 JBrowse link
G Kif3a kinesin family member 3A ISO RGD PMID:9920666 RGD:1581597 NCBI chrNW_004936647:2,461,017...2,502,550 JBrowse link
G Kifap3 kinesin associated protein 3 ISO (MGI:MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:MGI:4353477 NCBI chrNW_004936481:16,664,025...16,777,440 JBrowse link
G Lca5 lebercilin LCA5 ISO (MGI:MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:MGI:5588761 NCBI chrNW_004936510:10,652,378...10,702,761 JBrowse link
G LOC101966632 sperm-associated antigen 16 protein ISO (MGI:MGI:3052627|PMID:15328412), (MGI:MGI:3619868|PMID:16382026), (MGI:MGI:3844768|PMID:19305393) MGI PMID:15328412, PMID:16382026, PMID:19305393 MGI:MGI:3052627, MGI:MGI:3619868, MGI:MGI:3844768 NCBI chrNW_004936586:3,264,953...3,407,823 JBrowse link
G Mak male germ cell associated kinase ISO (MGI:MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:MGI:5298333 NCBI chrNW_004936534:2,170,853...2,239,647 JBrowse link
G Map4 microtubule associated protein 4 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004936596:1,455,705...1,546,007 JBrowse link
G Mapk15 mitogen-activated protein kinase 15 NOT ISO (PMID:29021280) UniProtKB PMID:29021280 NCBI chrNW_004936470:8,420,850...8,425,996 JBrowse link
G Mapt microtubule associated protein tau ISO (MGI:MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:MGI:3821640 NCBI chrNW_004936541:2,381,411...2,479,984 JBrowse link
G Mns1 meiosis specific nuclear structural 1 ISO (MGI:MGI:5318625|PMID:22396656) MGI PMID:22396656 MGI:MGI:5318625 NCBI chrNW_004936471:17,767,063...17,798,507 JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 ISO (MGI:MGI:5527012|PMID:24089209) UniProtKB PMID:24089209 MGI:MGI:5527012 NCBI chrNW_004936529:4,162,276...4,232,471 JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004936659:2,750,015...2,765,914 JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004936541:7,845,876...7,863,677 JBrowse link
G Prkar2a protein kinase cAMP-dependent type II regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004936529:528,138...601,078 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:MGI:2676521|PMID:14507858), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:4461813|PMID:20592197), (MGI:MGI:5588761|PMID:24833722), (MGI:MGI:6194004|PMID:29899041) MGI PMID:14507858, PMID:20368623, PMID:20592197, PMID:24833722, PMID:29899041 MGI:MGI:2676521, MGI:MGI:4460838, MGI:MGI:4461813, MGI:MGI:5588761, MGI:MGI:6194004 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:MGI:4353917|PMID:19657028) UniProtKB PMID:19657028 MGI:MGI:4353917 NCBI chrNW_004936675:2,527,406...2,564,464 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:MGI:1933524|PMID:11104772) MGI PMID:11104772 MGI:MGI:1933524 NCBI chrNW_004936880:440,900...511,503 JBrowse link
G Rpgrip1l RPGRIP1 like ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004936475:6,219,187...6,321,612 JBrowse link
G Rsph4a radial spoke head component 4A ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chrNW_004937068:45,105...59,540 JBrowse link
G Rsph6a radial spoke head 6 homolog A ISO (MGI:MGI:6279049|PMID:30239614) UniProt PMID:30239614 MGI:MGI:6279049 NCBI chrNW_004936706:2,144,528...2,161,767 JBrowse link
G Rsph9 radial spoke head component 9 ISO (PMID:26909801)
(MGI:MGI:6451324|PMID:30383886)
GO_Central
UniProt
PMID:26909801, PMID:30383886 MGI:MGI:6451324 NCBI chrNW_004936476:16,351,794...16,369,092 JBrowse link
G Septin2 septin 2 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004936745:518,650...555,187 JBrowse link
G Septin7 septin 7 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004936478:11,419,334...11,528,954 JBrowse link
G Septin9 septin 9 ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004936594:2,213,459...2,286,582 JBrowse link
G Spata7 spermatogenesis associated 7 ISO (PMID:25398945) UniProtKB PMID:25398945 NCBI chrNW_004936488:15,878,167...15,911,301 JBrowse link
G Tctex1d4 Tctex1 domain containing 4 ISO (MGI:MGI:5510909|PMID:23789093) MGI PMID:23789093 MGI:MGI:5510909 NCBI chrNW_004936474:26,032,109...26,032,777 JBrowse link
G Tmem67 transmembrane protein 67 colocalizes_with ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004936544:6,887,867...6,931,669 JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO (MGI:MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:MGI:5298450 NCBI chrNW_004936525:115,614...174,641 JBrowse link
G Ttc25 tetratricopeptide repeat domain 25 ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chrNW_004936490:16,808,659...16,832,814 JBrowse link
G Ttll10 tubulin tyrosine ligase like 10 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chrNW_004936737:1,910,286...1,926,061 JBrowse link
G Ttll8 tubulin tyrosine ligase like 8 ISO (MGI:MGI:3850271|PMID:19524510) UniProtKB PMID:19524510 MGI:MGI:3850271 NCBI chrNW_004936629:720,842...766,247 JBrowse link
G Tubb4a tubulin beta 4A class IVa ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004936588:3,821,171...3,826,827 JBrowse link
G Tulp3 TUB like protein 3 ISO (MGI:MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:MGI:3841503 NCBI chrNW_004936606:3,209,170...3,278,809 JBrowse link
G Wdr11 WD repeat domain 11 ISO (MGI:MGI:6116377|PMID:29263200) UniProt PMID:29263200 MGI:MGI:6116377 NCBI chrNW_004936486:10,007,728...10,061,640 JBrowse link
G Wdr35 WD repeat domain 35 ISO (MGI:MGI:4950635|PMID:21473986) UniProtKB PMID:21473986 MGI:MGI:4950635 NCBI chrNW_004936493:11,374,681...11,435,792 JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah9 dynein axonemal heavy chain 9 ISO (PMID:26909801), (PMID:30471717) GO_Central PMID:26909801, PMID:30471717 NCBI chrNW_004936595:4,338,831...4,671,178 JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah1 dynein axonemal heavy chain 1 ISO (PMID:24360805) SYSCILIA_CCNET PMID:24360805 NCBI chrNW_004936473:3,170,060...3,238,608 JBrowse link
G Dnah7 dynein axonemal heavy chain 7 ISO (PMID:11877439) SYSCILIA_CCNET PMID:11877439 NCBI chrNW_004936506:3,001,304...3,298,241 JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc114 coiled-coil domain containing 114 ISO (PMID:23261303) UniProtKB PMID:23261303 NCBI chrNW_004936664:2,439,434...2,464,878 JBrowse link
G Cfap70 cilia and flagella associated protein 70 ISO (PMID:31621862) UniProt PMID:31621862 NCBI chrNW_004936521:5,680,846...5,785,818 JBrowse link
G Dnah17 dynein axonemal heavy chain 17 ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004936594:2,987,744...3,079,553 JBrowse link
G Dnah5 dynein axonemal heavy chain 5 ISO (PMID:11062149), (PMID:11788826), (PMID:22499950)
(MGI:MGI:6147712|PMID:27353389)
(PMID:16627867)
SYSCILIA_CCNET
MGI
PMID:11062149, PMID:11788826, PMID:16627867, PMID:22499950, PMID:27353389 MGI:MGI:6147712 NCBI chrNW_004936665:2,267,272...2,545,765 JBrowse link
G Dnah9 dynein axonemal heavy chain 9 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chrNW_004936595:4,338,831...4,671,178 JBrowse link
G Dnai1 dynein axonemal intermediate chain 1 ISO (PMID:11231901), (PMID:16858015) SYSCILIA_CCNET PMID:11231901, PMID:16858015 NCBI chrNW_004936524:2,551,431...2,614,245 JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 ISO (PMID:18950741) SYSCILIA_CCNET PMID:18950741 NCBI chrNW_004936655:163,565...188,431 JBrowse link
G Dync1i2 dynein cytoplasmic 1 intermediate chain 2 ISO (MGI:MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:MGI:6147712 NCBI chrNW_004936509:1,915,006...1,969,857 JBrowse link
G Nme8 NME/NM23 family member 8 ISO (PMID:17360648) SYSCILIA_CCNET PMID:17360648 NCBI chrNW_004936478:13,176,388...13,243,043 JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc25 tetratricopeptide repeat domain 25 ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chrNW_004936490:16,808,659...16,832,814 JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein axonemal heavy chain 11 ISO (PMID:26909801)
(MGI:MGI:6120222|PMID:26909801)
GO_Central
MGI
PMID:26909801 MGI:MGI:6120222 NCBI chrNW_004936546:7,370,180...7,681,835 JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph4a radial spoke head component 4A ISO (MGI:MGI:5882054|PMID:26506310) MGI PMID:26506310 MGI:MGI:5882054 NCBI chrNW_004937068:45,105...59,540 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12069
    cellular anatomical entity 11979
      organelle 9322
        cilium 572
          ciliary plasm 100
            axoneme + 99
Path 2
Term Annotations click to browse term
  cellular_component 12069
    cellular anatomical entity 11979
      intracellular anatomical structure 10258
        cytoplasm 7903
          cytoplasmic region 183
            plasma membrane bounded cell projection cytoplasm 141
              ciliary plasm 100
                axoneme + 99
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.