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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle clustering
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Accession:GO:0097091 term browser browse the term
Definition:The process that results in grouping synaptic vesicles in presynaptic structures.


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synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:2680876|PMID:14622577)
Ensembl
RGD
PMID:14622577 GO_REF:0000107, MGI:MGI:2680876 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Nlgn1 neuroligin 1 IMP
ISO
ISS
IDA
PMID:19628693
(MGI:MGI:2665153|PMID:12796785), (MGI:MGI:3694190|PMID:10892652)
GO_REF:0000024
PMID:20534458
RGD
BHF-UCL
PMID:10892652, PMID:12796785, PMID:19628693, PMID:20534458 GO_REF:0000024, MGI:MGI:2665153, MGI:MGI:3694190, RGD:8554760, RGD:10047242 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nrxn1 neurexin 1 ISO
ISS
(MGI:MGI:2665153|PMID:12796785)
GO_REF:0000024
RGD
BHF-UCL
PMID:12796785 GO_REF:0000024, MGI:MGI:2665153 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) ISO (MGI:MGI:4442284|PMID:20332206) RGD PMID:20332206 MGI:MGI:4442284 NCBI chr 4:16,454,904...17,058,921
Ensembl chr 4:16,454,904...17,058,921
JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO (MGI:MGI:4830800|PMID:20338242) RGD PMID:20338242 MGI:MGI:4830800 NCBI chr16:20,435,098...20,439,206
Ensembl chr16:20,435,101...20,439,206
JBrowse link
G Syn1 synapsin I ISO (MGI:MGI:76610|PMID:7568108) RGD PMID:7568108 MGI:MGI:76610 NCBI chr  X:1,321,315...1,379,202
Ensembl chr  X:1,321,315...1,379,198
JBrowse link
G Syn2 synapsin II IEA
ISO
GO_REF:0000107
(MGI:MGI:3831450|PMID:18945891), (MGI:MGI:4830800|PMID:20338242)
Ensembl
RGD
PMID:18945891, PMID:20338242 GO_REF:0000107, MGI:MGI:3831450, MGI:MGI:4830800 NCBI chr 4:147,037,179...147,195,096
Ensembl chr 4:147,037,179...147,195,096
JBrowse link
G Syn3 synapsin III ISO (MGI:MGI:2180939|PMID:12040043) RGD PMID:12040043 MGI:MGI:2180939 NCBI chr 7:23,403,896...23,808,602
Ensembl chr 7:23,403,891...23,808,602
JBrowse link
G Syndig1 synapse differentiation inducing 1 IDA PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chr 3:145,031,427...145,199,273
Ensembl chr 3:145,032,200...145,199,356
JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog ISO (MGI:MGI:3629385|PMID:16675393), (MGI:MGI:3772418|PMID:18082964) RGD PMID:16675393, PMID:18082964 MGI:MGI:3629385, MGI:MGI:3772418 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 Bcl2-like 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Cdh2 cadherin 2 ISO
IEA
(MGI:MGI:4457945|PMID:20534458)
GO_REF:0000107
RGD
Ensembl
PMID:20534458 GO_REF:0000107, MGI:MGI:4457945 NCBI chr18:8,146,971...8,366,037
Ensembl chr18:8,146,971...8,360,684
JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 ISO
IEA
(MGI:MGI:4457945|PMID:20534458)
GO_REF:0000107
RGD
Ensembl
PMID:20534458 GO_REF:0000107, MGI:MGI:4457945 NCBI chr 4:10,995,241...12,472,423
Ensembl chr 4:10,995,234...11,610,518
JBrowse link
G Nlgn1 neuroligin 1 ISO (MGI:MGI:5284797|PMID:15620359) RGD PMID:15620359 MGI:MGI:5284797 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 ISO
IEA
(MGI:MGI:5284797|PMID:15620359)
GO_REF:0000107
RGD
Ensembl
PMID:15620359 GO_REF:0000107, MGI:MGI:5284797 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 ISO
IEA
(MGI:MGI:5286761|PMID:21808020)
GO_REF:0000107
RGD
Ensembl
PMID:21808020 GO_REF:0000107, MGI:MGI:5286761 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:22851330 RGD:13506174 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:22851330 RGD:13506174 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcdh17 protocadherin 17 ISO (MGI:MGI:5514320|PMID:23684785) RGD PMID:23684785 MGI:MGI:5514320 NCBI chr15:67,555,835...67,647,990
Ensembl chr15:67,555,835...67,645,088
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    cellular process 18800
      cellular localization 2967
        establishment of localization in cell 2178
          synaptic vesicle cycle 252
            synaptic vesicle clustering 18
              negative regulation of synaptic vesicle clustering 1
              positive regulation of synaptic vesicle clustering 8
              regulation of synaptic vesicle clustering + 10
Path 2
Term Annotations click to browse term
  biological_process 20028
    localization 6478
      establishment of localization 4887
        transport 4735
          vesicle-mediated transport 1673
            vesicle-mediated transport in synapse 280
              synaptic vesicle cycle 252
                synaptic vesicle clustering 18
                  negative regulation of synaptic vesicle clustering 1
                  positive regulation of synaptic vesicle clustering 8
                  regulation of synaptic vesicle clustering + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.