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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle localization
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Accession:GO:0097479 term browser browse the term
Definition:Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location.
Synonyms:exact_synonym: establishment and maintenance of synaptic vesicle localization;   establishment and maintenance of synaptic vesicle position;   synaptic vesicle localisation


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anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr15:62,888,359...62,938,758
Ensembl chr15:80,557,967...80,607,475
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr19:1,110,419...1,161,826
Ensembl chr19:2,085,540...2,137,593
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr10:70,643,520...70,672,821
Ensembl chr10:73,312,906...73,342,382
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 8:41,397,123...41,415,379
Ensembl chr 8:38,842,811...38,861,030
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 5:111,195,900...111,268,129
Ensembl chr 5:116,992,049...117,063,727
JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr15:68,524,982...68,583,917 JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr12:33,191,882...33,195,566
Ensembl chr12:33,911,309...33,920,506
JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr10:96,878,280...96,887,830
Ensembl chr10:100,358,095...100,368,640
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 Ensembl chr 4:6,787,943...6,788,596 JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 6:7,852,340...7,902,880
Ensembl chr 6:8,133,721...8,184,194
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 6:15,377,263...15,523,317
Ensembl chr 6:15,741,698...15,887,256
JBrowse link
G MADD MAP kinase activating death domain ISO (MGI:MGI:6189386|PMID:18849981) MGI PMID:18849981 MGI:MGI:6189386 NCBI chr11:47,216,006...47,276,422
Ensembl chr11:47,773,733...47,828,360
JBrowse link
G SNAPIN SNAP associated protein ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 1:129,014,668...129,018,428
Ensembl chr 1:132,644,320...132,647,095
JBrowse link
G TRIM46 tripartite motif containing 46 ISO (MGI:MGI:5708763|PMID:26671463) MGI PMID:26671463 MGI:MGI:5708763 NCBI chr 1:130,521,472...130,532,636
Ensembl chr 1:134,129,984...134,142,362
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr11:61,643,633...61,649,646
Ensembl chr11:64,969,447...64,975,156
JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTEN phosphatase and tensin homolog ISO (MGI:MGI:3629385|PMID:16675393), (MGI:MGI:3772418|PMID:18082964) CACAO PMID:16675393, PMID:18082964 MGI:MGI:3629385, MGI:MGI:3772418 NCBI chr10:84,587,841...84,689,043
Ensembl chr10:88,093,539...88,194,605
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:96,681,268...96,991,650
Ensembl chr2B:215,314,857...215,391,728
JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr20:27,955,688...28,015,950
Ensembl chr20:29,088,055...29,146,585
JBrowse link
G CDH2 cadherin 2 ISO (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chr18:21,210,001...21,435,919
Ensembl chr18:24,812,019...25,008,325
JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 ISO (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chr 7:69,943,704...71,395,176
Ensembl chr 7:83,758,512...84,760,872
JBrowse link
G NLGN1 neuroligin 1 ISO (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chr 3:170,416,885...171,333,094
Ensembl chr 3:178,810,253...179,503,756
JBrowse link
G NLGN2 neuroligin 2 ISO (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chr17:7,438,853...7,454,014 JBrowse link
G NLGN3 neuroligin 3 ISO (MGI:MGI:5286761|PMID:21808020) CACAO PMID:21808020 MGI:MGI:5286761 NCBI chr  X:60,413,098...60,439,359
Ensembl chr  X:70,469,764...70,496,526
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:22851330 RGD:13506174 NCBI chr11:81,011,324...81,122,352
Ensembl chr11:84,619,241...84,730,684
JBrowse link
G SNAP91 synaptosome associated protein 91 ISO RGD PMID:22851330 RGD:13506174 NCBI chr 6:81,441,792...81,600,505
Ensembl chr 6:84,720,850...84,874,407
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC2A4 solute carrier family 2 member 4 ISO PMID:28111082 SynGO PMID:28111082 RGD:13702195 NCBI chr17:7,312,605...7,319,430
Ensembl chr17:7,299,966...7,306,344
JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCDH17 protocadherin 17 ISO (MGI:MGI:5514320|PMID:23684785) MGI PMID:23684785 MGI:MGI:5514320 NCBI chr13:38,801,514...38,900,811
Ensembl chr13:57,532,850...57,631,725
JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRK2 leucine rich repeat kinase 2 ISO (MGI:MGI:4941068|PMID:21307259) ParkinsonsUK-UCL PMID:21307259 MGI:MGI:4941068 NCBI chr12:48,343,621...48,488,337
Ensembl chr12:49,205,930...49,350,462
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:18842885 RGD:8554167 NCBI chr11:81,011,324...81,122,352
Ensembl chr11:84,619,241...84,730,684
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:9590176 RGD:9684955 NCBI chr 1:203,484,803...203,501,395
Ensembl chr 1:208,695,615...208,712,105
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1S2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chr  X:8,449,885...8,478,932
Ensembl chr  X:15,807,476...15,836,172
JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:MGI:6189637|PMID:11588176)
PMID:22539861
SynGO PMID:11588176, PMID:22539861 MGI:MGI:6189637, RGD:12050120 NCBI chr19:1,110,419...1,161,826
Ensembl chr19:2,085,540...2,137,593
JBrowse link
G BTBD8 BTB domain containing 8 ISO (MGI:MGI:6104538|PMID:29262337) MGI PMID:29262337 MGI:MGI:6104538 NCBI chr 1:94,739,780...94,843,172
Ensembl chr 1:93,569,680...93,587,229
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNM1 dynamin 1 ISO (MGI:MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:MGI:5285027 NCBI chr 9:99,324,385...99,376,262
Ensembl chr 9:128,004,508...128,044,690
JBrowse link
G DNM3 dynamin 3 ISO (MGI:MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:MGI:5285027 NCBI chr 1:147,339,773...147,916,513
Ensembl chr 1:151,049,346...151,615,808
JBrowse link
G SNAP91 synaptosome associated protein 91 ISO (MGI:MGI:5707086|PMID:26412491) SynGO PMID:26412491 MGI:MGI:5707086 NCBI chr 6:81,441,792...81,600,505
Ensembl chr 6:84,720,850...84,874,407
JBrowse link
synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G NLGN1 neuroligin 1 ISO (MGI:MGI:2665153|PMID:12796785), (MGI:MGI:3694190|PMID:10892652)
PMID:20534458
PMID:19628693
BHF-UCL PMID:10892652, PMID:12796785, PMID:19628693, PMID:20534458 MGI:MGI:2665153, MGI:MGI:3694190, RGD:10047242, RGD:8554760 NCBI chr 3:170,416,885...171,333,094
Ensembl chr 3:178,810,253...179,503,756
JBrowse link
G NRXN1 neurexin 1 ISO (MGI:MGI:2665153|PMID:12796785) BHF-UCL PMID:12796785 MGI:MGI:2665153 NCBI chr2A:50,063,398...51,178,659
Ensembl chr2A:50,985,067...52,091,277
JBrowse link
G PCLO piccolo presynaptic cytomatrix protein ISO (MGI:MGI:4442284|PMID:20332206) SynGO PMID:20332206 MGI:MGI:4442284 NCBI chr 7:74,714,364...75,126,518 JBrowse link
G RAB3A RAB3A, member RAS oncogene family ISO (MGI:MGI:4830800|PMID:20338242) UniProt PMID:20338242 MGI:MGI:4830800 NCBI chr19:17,672,661...17,679,541
Ensembl chr19:18,649,166...18,656,768
JBrowse link
G SYN1 synapsin I ISO (MGI:MGI:76610|PMID:7568108) SynGO PMID:7568108 MGI:MGI:76610 NCBI chr  X:40,007,777...40,055,801 JBrowse link
G SYN2 synapsin II ISO (MGI:MGI:3831450|PMID:18945891), (MGI:MGI:4830800|PMID:20338242) UniProt
SynGO
PMID:18945891, PMID:20338242 MGI:MGI:3831450, MGI:MGI:4830800 NCBI chr 3:11,935,680...12,118,981
Ensembl chr 3:12,282,573...12,464,413
JBrowse link
G SYN3 synapsin III ISO (MGI:MGI:2180939|PMID:12040043) SynGO PMID:12040043 MGI:MGI:2180939 NCBI chr22:13,517,932...14,069,661
Ensembl chr22:31,373,604...31,866,798
JBrowse link
G SYNDIG1 synapse differentiation inducing 1 ISO PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chr20:24,402,471...24,629,365
Ensembl chr20:24,825,380...24,947,370
JBrowse link
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G DPYSL2 dihydropyrimidinase like 2 ISO RGD PMID:19755421 RGD:2316240 NCBI chr 8:25,786,950...25,927,782
Ensembl chr 8:22,693,863...22,834,080
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:MGI:3761431|PMID:17418794) MGI PMID:17418794 MGI:MGI:3761431 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815
JBrowse link
G LIN7A lin-7 homolog A, crumbs cell polarity complex component ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chr12:78,312,501...78,456,871
Ensembl chr12:81,442,152...81,567,522
JBrowse link
G MYLK2 myosin light chain kinase 2 ISO Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chr20:28,113,024...28,128,142
Ensembl chr20:29,243,391...29,258,508
JBrowse link
G NLGN1 neuroligin 1 ISO PMID:19628693 CACAO PMID:19628693 RGD:8554760 NCBI chr 3:170,416,885...171,333,094
Ensembl chr 3:178,810,253...179,503,756
JBrowse link
G RAB3A RAB3A, member RAS oncogene family ISO (MGI:MGI:3653776|PMID:11598194) UniProt PMID:11598194 MGI:MGI:3653776 NCBI chr19:17,672,661...17,679,541
Ensembl chr19:18,649,166...18,656,768
JBrowse link
G SNAPIN SNAP associated protein ISO (PMID:18167355) UniProtKB PMID:18167355 NCBI chr 1:129,014,668...129,018,428
Ensembl chr 1:132,644,320...132,647,095
JBrowse link
G SNCA synuclein alpha ISO (MGI:MGI:2388931|PMID:12388586) MGI PMID:12388586 MGI:MGI:2388931 NCBI chr 4:82,018,585...82,132,938
Ensembl chr 4:92,737,608...92,850,600
JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin ISO (PMID:24794856) UniProtKB PMID:24794856 NCBI chr15:23,519,311...23,620,532
Ensembl chr15:41,688,081...41,788,616
JBrowse link
G SYNJ1 synaptojanin 1 ISO (MGI:MGI:1346710|PMID:10535736) MGI PMID:10535736 MGI:MGI:1346710 NCBI chr21:18,990,526...19,088,839
Ensembl chr21:32,368,949...32,466,994
JBrowse link
G TMEM230 transmembrane protein 230 ISO (PMID:27270108) UniProtKB PMID:27270108 NCBI chr20:5,119,775...5,133,079
Ensembl chr20:4,882,980...4,925,869
JBrowse link
G TOR1A torsin family 1 member A ISO (PMID:18167355) UniProtKB PMID:18167355 NCBI chr 9:100,940,554...100,951,726 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12564
    localization 4940
      cellular localization 2363
        organelle localization 461
          vesicle localization 140
            synaptic vesicle localization 53
              establishment of synaptic vesicle localization 0
              synaptic vesicle clustering + 18
              synaptic vesicle transport + 40
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.