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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle localization
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Accession:GO:0097479 term browser browse the term
Definition:Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location.
Synonyms:exact_synonym: establishment and maintenance of synaptic vesicle localization;   establishment and maintenance of synaptic vesicle position;   synaptic vesicle localisation


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anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955425:22,792,616...23,051,509
Ensembl chrNW_004955425:22,792,616...23,051,737
JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955416:13,927,655...13,956,589
Ensembl chrNW_004955416:13,927,545...13,957,207
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955495:5,972,177...6,012,525
Ensembl chrNW_004955495:5,972,433...6,012,433
JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955437:17,786,419...17,810,678
Ensembl chrNW_004955437:17,786,419...17,810,678
JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955536:767,470...900,268
Ensembl chrNW_004955536:767,306...812,204
JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955408:35,621,062...35,680,620
Ensembl chrNW_004955408:35,621,062...35,680,683
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955458:3,352,442...3,356,224
Ensembl chrNW_004955458:3,352,012...3,365,080
JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955507:6,138,511...6,144,823
Ensembl chrNW_004955507:6,138,071...6,144,823
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955555:2,183,752...2,186,154
Ensembl chrNW_004955555:2,184,490...2,185,138
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955514:3,698,644...3,699,227 JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955465:5,910,095...5,943,996 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955409:7,902,125...7,913,966
Ensembl chrNW_004955409:7,899,601...7,913,966
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955590:276,143...382,812
Ensembl chrNW_004955590:281,704...386,189
JBrowse link
G Madd MAP kinase activating death domain ISO (MGI:MGI:6189386|PMID:18849981) MGI PMID:18849981 MGI:MGI:6189386 NCBI chrNW_004955422:902,969...940,201
Ensembl chrNW_004955422:902,969...940,201
JBrowse link
G Snapin SNAP associated protein ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004955545:306,546...308,229
Ensembl chrNW_004955545:306,546...308,229
JBrowse link
G Trim46 tripartite motif containing 46 ISO (MGI:MGI:5708763|PMID:26671463) MGI PMID:26671463 MGI:MGI:5708763 NCBI chrNW_004955545:1,646,244...1,656,825
Ensembl chrNW_004955545:1,646,244...1,656,825
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004955422:19,033,201...19,035,135
Ensembl chrNW_004955422:19,033,201...19,035,138
JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog ISO (MGI:MGI:3629385|PMID:16675393), (MGI:MGI:3772418|PMID:18082964) CACAO PMID:16675393, PMID:18082964 MGI:MGI:3629385, MGI:MGI:3772418 NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955457:5,678,826...5,816,114
Ensembl chrNW_004955457:5,678,436...5,875,024
JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004955422:29,254,440...29,307,104
Ensembl chrNW_004955422:29,254,216...29,308,174
JBrowse link
G Cdh2 cadherin 2 ISO (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chrNW_004955402:15,829,895...16,049,874
Ensembl chrNW_004955402:15,831,110...16,049,890
JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 ISO (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chrNW_004955410:6,739,115...7,295,027
Ensembl chrNW_004955410:6,400,242...7,294,924
JBrowse link
G Nlgn1 neuroligin 1 ISO (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chrNW_004955420:3,360,745...4,171,587
Ensembl chrNW_004955420:3,549,021...4,167,493
JBrowse link
G Nlgn2 neuroligin 2 ISO (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chrNW_004955467:9,504,974...9,520,059
Ensembl chrNW_004955467:9,504,974...9,520,059
JBrowse link
G Nlgn3 neuroligin 3 ISO (MGI:MGI:5286761|PMID:21808020) CACAO PMID:21808020 MGI:MGI:5286761 NCBI chrNW_004955475:10,712,170...10,735,857
Ensembl chrNW_004955475:10,712,170...10,735,857
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:22851330 RGD:13506174 NCBI chrNW_004955414:6,871,220...6,970,569
Ensembl chrNW_004955414:6,871,520...6,969,208
JBrowse link
G Snap91 synaptosome associated protein 91 ISO RGD PMID:22851330 RGD:13506174 NCBI chrNW_004955411:11,175,587...11,301,145
Ensembl chrNW_004955411:11,175,525...11,300,950
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 ISO PMID:28111082 SynGO PMID:28111082 RGD:13702195 NCBI chrNW_004955467:9,630,304...9,636,005
Ensembl chrNW_004955467:9,630,304...9,636,005
JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcdh17 protocadherin 17 ISO (MGI:MGI:5514320|PMID:23684785) MGI PMID:23684785 MGI:MGI:5514320 NCBI chrNW_004955404:46,795,303...46,886,918
Ensembl chrNW_004955404:46,791,148...46,886,918
JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine rich repeat kinase 2 ISO (MGI:MGI:4941068|PMID:21307259) ParkinsonsUK-UCL PMID:21307259 MGI:MGI:4941068 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:18842885 RGD:8554167 NCBI chrNW_004955414:6,871,220...6,970,569
Ensembl chrNW_004955414:6,871,520...6,969,208
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP ribosylation factor 1 ISO RGD PMID:9590176 RGD:9684955 NCBI chrNW_004955581:319,942...335,112
Ensembl chrNW_004955581:319,942...335,112
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chrNW_004955519:2,351,754...2,370,650 JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chrNW_004955425:22,792,616...23,051,509
Ensembl chrNW_004955425:22,792,616...23,051,737
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO PMID:22539861
(MGI:MGI:6189637|PMID:11588176)
SynGO
MGI
PMID:11588176, PMID:22539861 MGI:MGI:6189637, RGD:12050120 NCBI chrNW_004955495:5,972,177...6,012,525
Ensembl chrNW_004955495:5,972,433...6,012,433
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 ISO (MGI:MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:MGI:5285027 NCBI chrNW_004955570:752,335...781,770
Ensembl chrNW_004955570:752,335...781,770
JBrowse link
G Dnm3 dynamin 3 ISO (MGI:MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:MGI:5285027 NCBI chrNW_004955406:12,345,483...12,881,182
Ensembl chrNW_004955406:12,345,693...12,881,269
JBrowse link
G Snap91 synaptosome associated protein 91 ISO (MGI:MGI:5707086|PMID:26412491) SynGO PMID:26412491 MGI:MGI:5707086 NCBI chrNW_004955411:11,175,587...11,301,145
Ensembl chrNW_004955411:11,175,525...11,300,950
JBrowse link
synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO (MGI:MGI:2680876|PMID:14622577) SynGO PMID:14622577 MGI:MGI:2680876 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Nlgn1 neuroligin 1 ISO PMID:19628693
(MGI:MGI:2665153|PMID:12796785), (MGI:MGI:3694190|PMID:10892652)
PMID:20534458
BHF-UCL PMID:10892652, PMID:12796785, PMID:19628693, PMID:20534458 MGI:MGI:2665153, MGI:MGI:3694190, RGD:10047242, RGD:8554760 NCBI chrNW_004955420:3,360,745...4,171,587
Ensembl chrNW_004955420:3,549,021...4,167,493
JBrowse link
G Nrxn1 neurexin 1 ISO (MGI:MGI:2665153|PMID:12796785) BHF-UCL PMID:12796785 MGI:MGI:2665153 NCBI chrNW_004955441:16,230,977...17,178,003
Ensembl chrNW_004955441:16,234,070...17,178,005
JBrowse link
G Pclo piccolo presynaptic cytomatrix protein ISO (MGI:MGI:4442284|PMID:20332206) SynGO PMID:20332206 MGI:MGI:4442284 NCBI chrNW_004955410:2,998,345...3,334,056
Ensembl chrNW_004955410:3,152,202...3,292,920
JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO (MGI:MGI:4830800|PMID:20338242) UniProt PMID:20338242 MGI:MGI:4830800 NCBI chrNW_004955524:3,220,108...3,224,376
Ensembl chrNW_004955524:3,221,366...3,224,376
JBrowse link
G Syn1 synapsin I ISO (MGI:MGI:76610|PMID:7568108) SynGO PMID:7568108 MGI:MGI:76610 NCBI chrNW_004955516:460,258...521,484
Ensembl chrNW_004955516:460,198...521,484
JBrowse link
G Syn2 synapsin II ISO (MGI:MGI:3831450|PMID:18945891), (MGI:MGI:4830800|PMID:20338242) UniProt
SynGO
PMID:18945891, PMID:20338242 MGI:MGI:3831450, MGI:MGI:4830800 NCBI chrNW_004955429:14,676,286...14,724,625 JBrowse link
G Syn3 synapsin III ISO (MGI:MGI:2180939|PMID:12040043) SynGO PMID:12040043 MGI:MGI:2180939 NCBI chrNW_004955405:41,450,081...41,762,894
Ensembl chrNW_004955405:41,455,465...41,762,920
JBrowse link
G Syndig1 synapse differentiation inducing 1 ISO PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chrNW_004955415:30,909,654...31,005,421
Ensembl chrNW_004955415:30,909,014...31,005,533
JBrowse link
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Dpysl2 dihydropyrimidinase like 2 ISO RGD PMID:19755421 RGD:2316240 NCBI chrNW_004955403:49,188,259...49,306,916
Ensembl chrNW_004955403:49,188,205...49,307,810
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (MGI:MGI:3761431|PMID:17418794) MGI PMID:17418794 MGI:MGI:3761431 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chrNW_004955405:19,403,002...19,548,716 JBrowse link
G Mylk2 myosin light chain kinase 2 ISO Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chrNW_004955422:29,141,699...29,154,927
Ensembl chrNW_004955422:29,141,348...29,154,927
JBrowse link
G Nlgn1 neuroligin 1 ISO PMID:19628693 CACAO PMID:19628693 RGD:8554760 NCBI chrNW_004955420:3,360,745...4,171,587
Ensembl chrNW_004955420:3,549,021...4,167,493
JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO (MGI:MGI:3653776|PMID:11598194) UniProt PMID:11598194 MGI:MGI:3653776 NCBI chrNW_004955524:3,220,108...3,224,376
Ensembl chrNW_004955524:3,221,366...3,224,376
JBrowse link
G Snapin SNAP associated protein ISO (PMID:18167355) UniProtKB PMID:18167355 NCBI chrNW_004955545:306,546...308,229
Ensembl chrNW_004955545:306,546...308,229
JBrowse link
G Snca synuclein alpha ISO (MGI:MGI:2388931|PMID:12388586) MGI PMID:12388586 MGI:MGI:2388931 NCBI chrNW_004955405:854,011...962,741
Ensembl chrNW_004955405:853,946...965,403
JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin ISO (PMID:24794856) UniProtKB PMID:24794856 NCBI chrNW_004955416:11,084,448...11,168,478
Ensembl chrNW_004955416:11,086,176...11,168,332
JBrowse link
G Synj1 synaptojanin 1 ISO (MGI:MGI:1346710|PMID:10535736) MGI PMID:10535736 MGI:MGI:1346710 NCBI chrNW_004955407:32,094,076...32,175,676
Ensembl chrNW_004955407:32,093,479...32,175,795
JBrowse link
G Tmem230 transmembrane protein 230 ISO (PMID:27270108) UniProtKB PMID:27270108 NCBI chrNW_004955415:15,733,134...15,743,078
Ensembl chrNW_004955415:15,733,134...15,742,909
JBrowse link
G Tor1a torsin family 1 member A ISO (PMID:18167355) UniProtKB PMID:18167355 NCBI chrNW_004955513:30,655...36,299
Ensembl chrNW_004955513:30,655...36,360
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    localization 4760
      cellular localization 2319
        organelle localization 445
          vesicle localization 136
            synaptic vesicle localization 51
              establishment of synaptic vesicle localization 0
              synaptic vesicle clustering + 18
              synaptic vesicle transport + 38
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.