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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle localization
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Accession:GO:0097479 term browser browse the term
Definition:Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location.
Synonyms:exact_synonym: establishment and maintenance of synaptic vesicle localization;   establishment and maintenance of synaptic vesicle position;   synaptic vesicle localisation


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anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 3:28,481,974...28,748,095
Ensembl chr 3:28,481,038...28,751,258
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 3:54,509,753...54,539,520
Ensembl chr 3:54,508,627...54,539,505
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:56,893,479...56,932,460
Ensembl chr20:56,893,535...56,931,830
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:24,521,655...24,540,232
Ensembl chr 4:24,516,758...24,540,232
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 IEA Ensembl GO_REF:0000107 NCBI chr16:23,500,988...23,518,193
Ensembl chr16:23,454,325...23,518,193
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 IEA Ensembl GO_REF:0000107 NCBI chr11:5,543,140...5,611,322
Ensembl chr11:5,543,222...5,610,930
JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:52,807,462...52,865,290
Ensembl chr 3:52,807,462...52,865,245
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr10:116,993...120,244 JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr28:13,040,016...13,044,364
Ensembl chr28:13,040,573...13,044,323
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 IEA Ensembl GO_REF:0000107 NCBI chr 3:58,822,405...58,823,770
Ensembl chr 3:58,822,482...58,823,138
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 IEA Ensembl GO_REF:0000107 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 IEA Ensembl GO_REF:0000107 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:14,738,025...14,862,609
Ensembl chr35:14,738,029...14,864,169
JBrowse link
G MADD MAP kinase activating death domain ISO (MGI:MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:MGI:6189386 NCBI chr18:42,290,226...42,332,237
Ensembl chr18:42,290,754...42,328,586
JBrowse link
G SNAPIN SNAP associated protein ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 7:43,410,554...43,411,929
Ensembl chr 7:43,410,998...43,412,323
JBrowse link
G TRIM46 tripartite motif containing 46 IEA Ensembl GO_REF:0000107 NCBI chr 7:42,345,506...42,354,667
Ensembl chr 7:42,345,523...42,354,557
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr18:51,020,263...51,026,280
Ensembl chr18:51,021,116...51,026,273
JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTEN phosphatase and tensin homolog IEA Ensembl GO_REF:0000107 NCBI chr26:37,853,148...37,913,176
Ensembl chr26:37,835,661...37,913,176
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:33,839,345...33,949,056
Ensembl chr27:33,837,318...33,934,896
JBrowse link
G MAP2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr37:17,316,899...17,611,360
Ensembl chr37:17,466,678...17,607,803
JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr24:21,145,214...21,209,425
Ensembl chr24:21,145,215...21,196,355
JBrowse link
G CDH2 cadherin 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:60,736,760...60,950,477
Ensembl chr 7:60,736,760...60,951,034
JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr18:17,973,058...19,098,785
Ensembl chr18:17,918,928...18,930,059
JBrowse link
G NLGN1 neuroligin 1 IEA Ensembl GO_REF:0000107 NCBI chr34:37,397,772...38,203,634
Ensembl chr34:37,572,629...38,203,177
JBrowse link
G NLGN2 neuroligin 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,338,602...32,351,546
Ensembl chr 5:32,340,335...32,352,412
JBrowse link
G NLGN3 neuroligin 3 IEA Ensembl GO_REF:0000107 NCBI chr  X:55,510,729...55,532,396
Ensembl chr  X:55,513,626...55,531,371
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:22851330 RGD:13506174 NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616
JBrowse link
G SNAP91 synaptosome associated protein 91 ISO RGD PMID:22851330 RGD:13506174 NCBI chr12:43,919,925...44,058,315
Ensembl chr12:43,919,925...44,058,616
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC2A4 solute carrier family 2 member 4 ISO PMID:28111082 SynGO PMID:28111082 RGD:13702195 NCBI chr 5:32,238,095...32,244,022
Ensembl chr 5:32,238,095...32,244,021
JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCDH17 protocadherin 17 IEA Ensembl GO_REF:0000107 NCBI chr22:13,865,138...13,962,110
Ensembl chr22:13,865,900...13,958,405
JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRK2 leucine rich repeat kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:18842885 RGD:8554167 NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:9590176 RGD:9684955 NCBI chr14:835,476...836,424
Ensembl chr14:835,476...836,424
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1S2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chr  X:12,075,797...12,105,911
Ensembl chr  X:12,076,724...12,103,654
JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chr 3:28,481,974...28,748,095
Ensembl chr 3:28,481,038...28,751,258
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:56,893,479...56,932,460
Ensembl chr20:56,893,535...56,931,830
JBrowse link
G KIAA1107 KIAA1107 ortholog ISO (MGI:MGI:6104538|PMID:29262337) MGI PMID:29262337 MGI:MGI:6104538 NCBI chr 6:56,756,682...56,849,849
Ensembl chr 6:56,698,320...56,900,173
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNM1 dynamin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:55,252,802...55,298,244
Ensembl chr 9:55,252,347...55,298,244
JBrowse link
G DNM2 dynamin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:50,398,866...50,487,303
Ensembl chr20:50,398,864...50,487,241
JBrowse link
G DNM3 dynamin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:26,569,708...27,024,939
Ensembl chr 7:26,574,453...27,024,759
JBrowse link
G MX1 MX dynamin like GTPase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:35,898,206...35,929,802
Ensembl chr31:35,860,590...35,951,350
JBrowse link
G MX2 MX dynamin like GTPase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:35,860,596...35,883,607
Ensembl chr31:35,860,590...35,951,350
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616
JBrowse link
G SNAP91 synaptosome associated protein 91 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:43,919,925...44,058,315
Ensembl chr12:43,919,925...44,058,616
JBrowse link
synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G NLGN1 neuroligin 1 IEA Ensembl GO_REF:0000107 NCBI chr34:37,397,772...38,203,634
Ensembl chr34:37,572,629...38,203,177
JBrowse link
G NRXN1 neurexin 1 ISO (MGI:MGI:2665153|PMID:12796785) BHF-UCL PMID:12796785 MGI:MGI:2665153 NCBI chr10:51,555,660...52,666,774
Ensembl chr10:51,558,452...52,667,569
JBrowse link
G PCLO piccolo presynaptic cytomatrix protein ISO (MGI:MGI:4442284|PMID:20332206) SynGO PMID:20332206 MGI:MGI:4442284 NCBI chr18:22,385,102...22,701,944
Ensembl chr18:22,385,100...22,706,793
JBrowse link
G RAB3A RAB3A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr20:44,796,740...44,802,224
Ensembl chr20:44,796,895...44,801,692
JBrowse link
G SYN1 synapsin I IEA Ensembl GO_REF:0000107 NCBI chr  X:41,191,571...41,241,557
Ensembl chr  X:41,191,571...41,241,640
JBrowse link
G SYN2 synapsin II IEA Ensembl GO_REF:0000107 NCBI chr20:6,368,348...6,569,355
Ensembl chr20:6,369,122...6,568,508
JBrowse link
G SYN3 synapsin III ISO (MGI:MGI:2180939|PMID:12040043) SynGO PMID:12040043 MGI:MGI:2180939 NCBI chr10:30,475,134...30,927,758
Ensembl chr10:30,482,870...30,923,257
JBrowse link
G SYNDIG1 synapse differentiation inducing 1 ISO PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chr23:759,787...865,659
Ensembl chr23:685,782...865,359
JBrowse link
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5 cyclin dependent kinase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:15,105,177...15,113,085
Ensembl chr16:15,101,230...15,109,269
JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DPYSL2 dihydropyrimidinase like 2 ISO RGD PMID:19755421 RGD:2316240 NCBI chr25:30,900,347...31,038,256
Ensembl chr25:30,903,253...31,038,144
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:MGI:3761431|PMID:17418794) MGI PMID:17418794 MGI:MGI:3761431 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G KIF5A kinesin family member 5A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:1,637,007...1,666,790
Ensembl chr10:1,636,932...1,664,767
JBrowse link
G KIF5B kinesin family member 5B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link
G KIF5C kinesin family member 5C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:50,535,622...50,684,485
Ensembl chr19:50,535,456...50,668,738
JBrowse link
G LIN7A lin-7 homolog A, crumbs cell polarity complex component IEA Ensembl GO_REF:0000107 NCBI chr15:23,101,524...23,186,343
Ensembl chr15:23,111,944...23,187,354
JBrowse link
G MYLK2 myosin light chain kinase 2 ISO Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chr24:21,284,309...21,297,889
Ensembl chr24:21,284,352...21,309,363
JBrowse link
G NLGN1 neuroligin 1 ISO PMID:19628693 CACAO PMID:19628693 RGD:8554760 NCBI chr34:37,397,772...38,203,634
Ensembl chr34:37,572,629...38,203,177
JBrowse link
G RAB3A RAB3A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr20:44,796,740...44,802,224
Ensembl chr20:44,796,895...44,801,692
JBrowse link
G SNAPIN SNAP associated protein IEA Ensembl GO_REF:0000107 NCBI chr 7:43,410,554...43,411,929
Ensembl chr 7:43,410,998...43,412,323
JBrowse link
G SNCA synuclein alpha IEA Ensembl GO_REF:0000107 NCBI chr32:12,915,871...13,079,338
Ensembl chr32:12,916,215...13,060,383
JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:11,233,709...11,305,454
Ensembl chr30:11,233,718...11,305,485
JBrowse link
G SYNJ1 synaptojanin 1 ISO (MGI:MGI:1346710|PMID:10535736) MGI PMID:10535736 MGI:MGI:1346710 NCBI chr31:27,308,169...27,399,226
Ensembl chr31:27,308,169...27,399,197
JBrowse link
G TMEM230 transmembrane protein 230 IEA Ensembl GO_REF:0000107 NCBI chr24:16,486,514...16,496,180
Ensembl chr24:16,486,574...16,495,491
JBrowse link
G TOR1A torsin family 1 member A IEA Ensembl GO_REF:0000107 NCBI chr 9:54,017,895...54,027,049
Ensembl chr 9:54,017,952...54,026,680
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    localization 5974
      cellular localization 2812
        organelle localization 560
          vesicle localization 179
            synaptic vesicle localization 61
              establishment of synaptic vesicle localization 0
              synaptic vesicle clustering + 18
              synaptic vesicle transport + 48
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.