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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle localization
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Accession:GO:0097479 term browser browse the term
Definition:Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location.
Synonyms:exact_synonym: establishment and maintenance of synaptic vesicle localization;   establishment and maintenance of synaptic vesicle position;   synaptic vesicle localisation


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anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 5:78,000,522...78,294,704
Ensembl chr 5:78,000,525...78,294,755
Ensembl chr 5:78,000,525...78,294,755
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr15:82,659,281...82,709,875
Ensembl chr15:82,659,281...82,709,946
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr19:2,100,988...2,151,566
Ensembl chr19:2,100,988...2,164,468
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 ISS UniProtKB GO_REF:0000024 NCBI chr10:74,120,012...74,151,067
Ensembl chr10:74,120,255...74,151,063
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 ISS UniProtKB GO_REF:0000024 NCBI chr 8:42,153,035...42,171,183
Ensembl chr 8:42,152,946...42,171,673
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 ISS UniProtKB GO_REF:0000024 NCBI chr 5:115,841,606...115,914,081
Ensembl chr 5:115,841,592...115,914,081
JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 ISS UniProtKB GO_REF:0000024 NCBI chr15:89,830,599...89,893,994
Ensembl chr15:89,830,599...89,894,638
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISS UniProtKB GO_REF:0000024 NCBI chr12:55,716,034...55,719,707
Ensembl chr12:55,716,037...55,720,087
JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 ISS UniProtKB GO_REF:0000024 NCBI chr10:100,273,278...100,286,692
Ensembl chr10:100,273,280...100,286,680
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 ISS UniProtKB GO_REF:0000024 NCBI chr19:45,178,784...45,202,715
Ensembl chr19:45,178,784...45,216,933
Ensembl chr19:45,178,784...45,216,933
JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 ISS UniProtKB GO_REF:0000024 NCBI chr 4:6,716,174...6,717,664
Ensembl chr 4:6,716,174...6,717,664
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 ISS UniProtKB GO_REF:0000024 NCBI chr 6:8,013,567...8,064,414
Ensembl chr 6:8,013,567...8,064,396
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 IEA
ISS
Ensembl
UniProtKB
GO_REF:0000024, GO_REF:0000107 NCBI chr15:45,587,123...45,609,716
Ensembl chr15:45,587,214...45,615,945
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 6:15,522,803...15,663,058
Ensembl chr 6:15,522,801...15,663,058
Ensembl chr 6:15,522,801...15,663,058
JBrowse link
G MADD MAP kinase activating death domain ISO (MGI:MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:MGI:6189386 NCBI chr11:47,269,188...47,330,031
Ensembl chr11:47,269,161...47,330,031
JBrowse link
G SNAPIN SNAP associated protein ISS UniProtKB GO_REF:0000024 NCBI chr 1:153,658,654...153,661,852
Ensembl chr 1:153,658,703...153,661,852
JBrowse link
G TRIM46 tripartite motif containing 46 IEA Ensembl GO_REF:0000107 NCBI chr 1:155,173,381...155,184,971
Ensembl chr 1:155,173,787...155,184,971
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 IEA Ensembl GO_REF:0000107 NCBI chr11:66,278,175...66,284,206
Ensembl chr11:66,278,175...66,285,301
JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTEN phosphatase and tensin homolog ISS BHF-UCL GO_REF:0000024 NCBI chr10:87,863,625...87,971,930
Ensembl chr10:87,863,625...87,971,930
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:12,357,078...12,471,233
Ensembl chr12:12,357,078...12,471,233
JBrowse link
G MAP2 microtubule associated protein 2 ISS ARUK-UCL GO_REF:0000024 NCBI chr 2:209,424,047...209,734,118
Ensembl chr 2:209,424,058...209,734,118
JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr20:31,664,452...31,723,963
Ensembl chr20:31,664,452...31,723,989
JBrowse link
G CDH2 cadherin 2 IEA Ensembl GO_REF:0000107 NCBI chr18:27,932,878...28,177,130
Ensembl chr18:27,932,879...28,177,946
Ensembl chr18:27,932,879...28,177,946
JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:78,017,055...79,453,667
Ensembl chr 7:78,017,055...79,453,667
JBrowse link
G NLGN1 neuroligin 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:173,395,929...174,294,372
Ensembl chr 3:173,396,284...174,286,644
JBrowse link
G NLGN2 neuroligin 2 IEA Ensembl GO_REF:0000107 NCBI chr17:7,405,492...7,419,860
Ensembl chr17:7,404,874...7,419,860
JBrowse link
G NLGN3 neuroligin 3 IEA Ensembl GO_REF:0000107 NCBI chr  X:71,144,389...71,175,307
Ensembl chr  X:71,144,831...71,171,201
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:22851330 RGD:13506174 NCBI chr11:85,957,175...86,069,860
Ensembl chr11:85,957,175...86,069,882
JBrowse link
G SNAP91 synaptosome associated protein 91 ISO RGD PMID:22851330 RGD:13506174 NCBI chr 6:83,552,885...83,709,408
Ensembl chr 6:83,552,880...83,709,691
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC2A4 solute carrier family 2 member 4 IEA Ensembl GO_REF:0000107 NCBI chr17:7,281,718...7,288,257
Ensembl chr17:7,281,718...7,288,257
JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRSK1 BR serine/threonine kinase 1 TAS (PMID:18268107) ARUK-UCL PMID:18268107 NCBI chr19:55,283,997...55,312,562
Ensembl chr19:55,282,072...55,312,562
JBrowse link
G BRSK2 BR serine/threonine kinase 2 TAS (PMID:18268107) ARUK-UCL PMID:18268107 NCBI chr11:1,389,934...1,462,689
Ensembl chr11:1,389,899...1,462,689
JBrowse link
G PCDH17 protocadherin 17 IEA Ensembl GO_REF:0000107 NCBI chr13:57,630,104...57,729,311
Ensembl chr13:57,631,744...57,729,311
JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRK2 leucine rich repeat kinase 2 TAS
IBA
ISS
(PMID:21563316)
(PMID:21873635)
ParkinsonsUK-UCL
GO_Central
PMID:21563316, PMID:21873635 GO_REF:0000024 NCBI chr12:40,224,890...40,369,285
Ensembl chr12:40,196,744...40,369,285
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:18842885 RGD:8554167 NCBI chr11:85,957,175...86,069,860
Ensembl chr11:85,957,175...86,069,882
JBrowse link
G PINK1 PTEN induced kinase 1 TAS (PMID:21563316) ParkinsonsUK-UCL PMID:21563316 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase NAS (PMID:21563316) ParkinsonsUK-UCL PMID:21563316 NCBI chr 6:161,347,417...162,727,802
Ensembl chr 6:161,347,417...162,727,771
Ensembl chr 6:161,347,417...162,727,771
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:228,082,708...228,099,212
Ensembl chr 1:228,082,660...228,099,212
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1S2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chr  X:15,825,806...15,854,966
Ensembl chr  X:15,825,806...15,854,931
JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chr 5:78,000,522...78,294,704
Ensembl chr 5:78,000,525...78,294,755
Ensembl chr 5:78,000,525...78,294,755
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:2,100,988...2,151,566
Ensembl chr19:2,100,988...2,164,468
JBrowse link
G BTBD8 BTB domain containing 8 ISO (MGI:MGI:6104538|PMID:29262337) MGI PMID:29262337 MGI:MGI:6104538 NCBI chr 1:92,080,345...92,188,509
Ensembl chr 1:92,080,305...92,184,725
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNM1 dynamin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:128,203,379...128,255,244
Ensembl chr 9:128,191,655...128,255,248
JBrowse link
G DNM2 dynamin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:10,718,079...10,831,903
Ensembl chr19:10,718,079...10,833,488
JBrowse link
G DNM3 dynamin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:171,841,495...172,418,466
Ensembl chr 1:171,841,498...172,418,466
JBrowse link
G MX1 MX dynamin like GTPase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,420,329...41,459,214
Ensembl chr21:41,420,304...41,459,214
JBrowse link
G MX2 MX dynamin like GTPase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,361,944...41,409,393
Ensembl chr21:41,361,999...41,409,393
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:85,957,175...86,069,860
Ensembl chr11:85,957,175...86,069,882
JBrowse link
G SNAP91 synaptosome associated protein 91 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:83,552,885...83,709,408
Ensembl chr 6:83,552,880...83,709,691
JBrowse link
synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G NLGN1 neuroligin 1 ISS BHF-UCL GO_REF:0000024 NCBI chr 3:173,395,929...174,294,372
Ensembl chr 3:173,396,284...174,286,644
JBrowse link
G NRXN1 neurexin 1 ISS BHF-UCL GO_REF:0000024 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575
JBrowse link
G PCLO piccolo presynaptic cytomatrix protein ISO (MGI:MGI:4442284|PMID:20332206) SynGO PMID:20332206 MGI:MGI:4442284 NCBI chr 7:82,754,012...83,164,161
Ensembl chr 7:82,754,012...83,162,930
JBrowse link
G RAB3A RAB3A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr19:18,196,784...18,204,042
Ensembl chr19:18,196,784...18,204,042
JBrowse link
G SYN1 synapsin I IEA Ensembl GO_REF:0000107 NCBI chr  X:47,571,901...47,619,857
Ensembl chr  X:47,571,901...47,619,857
JBrowse link
G SYN2 synapsin II IEA Ensembl GO_REF:0000107 NCBI chr 3:12,004,366...12,192,032
Ensembl chr 3:12,004,388...12,192,032
JBrowse link
G SYN3 synapsin III ISO (MGI:MGI:2180939|PMID:12040043) SynGO PMID:12040043 MGI:MGI:2180939 NCBI chr22:32,507,820...33,058,381
Ensembl chr22:32,507,820...33,058,381
Ensembl chr22:32,507,820...33,058,381
JBrowse link
G SYNDIG1 synapse differentiation inducing 1 ISS UniProtKB GO_REF:0000024 NCBI chr20:24,469,629...24,666,616
Ensembl chr20:24,469,629...24,666,616
JBrowse link
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5 cyclin dependent kinase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:151,053,815...151,057,897
Ensembl chr 7:151,053,815...151,057,897
JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DNM2 dynamin 2 NAS (PMID:11583995) UniProtKB PMID:11583995 NCBI chr19:10,718,079...10,831,903
Ensembl chr19:10,718,079...10,833,488
JBrowse link
G DPYSL2 dihydropyrimidinase like 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:26,514,031...26,658,175
Ensembl chr 8:26,514,031...26,658,178
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:MGI:3761431|PMID:17418794) MGI PMID:17418794 MGI:MGI:3761431 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,334...121,598,458
Ensembl chr10:121,478,334...121,598,458
JBrowse link
G KIF5A kinesin family member 5A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:57,550,039...57,586,633
Ensembl chr12:57,546,026...57,586,633
Ensembl chr12:57,546,026...57,586,633
JBrowse link
G KIF5B kinesin family member 5B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:32,009,015...32,056,425
Ensembl chr10:32,009,015...32,056,425
JBrowse link
G KIF5C kinesin family member 5C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:148,875,227...149,026,759
Ensembl chr 2:148,875,227...149,026,759
JBrowse link
G LIN7A lin-7 homolog A, crumbs cell polarity complex component IEA Ensembl GO_REF:0000107 NCBI chr12:80,792,520...80,937,934
Ensembl chr12:80,792,520...80,937,925
JBrowse link
G MYLK2 myosin light chain kinase 2 ISO Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chr20:31,819,356...31,834,684
Ensembl chr20:31,819,308...31,834,689
JBrowse link
G NLGN1 neuroligin 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:173,395,929...174,294,372
Ensembl chr 3:173,396,284...174,286,644
JBrowse link
G RAB27A RAB27A, member RAS oncogene family TAS (PMID:21563316) ParkinsonsUK-UCL PMID:21563316 NCBI chr15:55,202,966...55,291,338
Ensembl chr15:55,202,966...55,319,113
JBrowse link
G RAB3A RAB3A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr19:18,196,784...18,204,042
Ensembl chr19:18,196,784...18,204,042
JBrowse link
G SNAPIN SNAP associated protein IMP (PMID:18167355) UniProtKB PMID:18167355 NCBI chr 1:153,658,654...153,661,852
Ensembl chr 1:153,658,703...153,661,852
JBrowse link
G SNCA synuclein alpha IEA Ensembl GO_REF:0000107 NCBI chr 4:89,724,099...89,838,324
Ensembl chr 4:89,700,345...89,838,315
Ensembl chr 4:89,700,345...89,838,315
JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin IMP
IBA
(PMID:24794856)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:24794856 NCBI chr15:44,562,696...44,663,678
Ensembl chr15:44,562,696...44,663,678
JBrowse link
G SYNJ1 synaptojanin 1 ISS ParkinsonsUK-UCL GO_REF:0000024 NCBI chr21:32,628,759...32,731,247
Ensembl chr21:32,628,759...32,728,048
Ensembl chr21:32,628,759...32,728,048
JBrowse link
G TMEM230 transmembrane protein 230 IMP (PMID:27270108) UniProtKB PMID:27270108 NCBI chr20:5,064,877...5,113,091
Ensembl chr20:5,068,232...5,113,103
JBrowse link
G TOR1A torsin family 1 member A IMP
IEA
(PMID:18167355) UniProtKB
InterPro
PMID:18167355 GO_REF:0000002 NCBI chr 9:129,812,942...129,824,136
Ensembl chr 9:129,812,942...129,824,244
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18670
    localization 7226
      cellular localization 3776
        organelle localization 724
          vesicle localization 249
            synaptic vesicle localization 66
              establishment of synaptic vesicle localization 0
              synaptic vesicle clustering + 20
              synaptic vesicle transport + 51
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.