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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle localization
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Accession:GO:0097479 term browser browse the term
Definition:Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location.
Synonyms:exact_synonym: establishment and maintenance of synaptic vesicle localization;   establishment and maintenance of synaptic vesicle position;   synaptic vesicle localisation


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anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit IMP
IBA
(MGI:MGI:5437407|PMID:21998198)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:21998198 MGI:MGI:5437407, MGI:MGI:6201960 NCBI chr13:94,358,960...94,566,316
Ensembl chr13:94,358,960...94,566,317
JBrowse link
G Ap3b2 adaptor-related protein complex 3, beta 2 subunit IMP
IBA
(MGI:MGI:5437407|PMID:21998198)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:21998198 MGI:MGI:5437407, MGI:MGI:6201960 NCBI chr 7:81,460,399...81,493,997
Ensembl chr 7:81,460,399...81,493,925
JBrowse link
G Ap3d1 adaptor-related protein complex 3, delta 1 subunit IMP
IBA
(MGI:MGI:5437407|PMID:21998198)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:21998198 MGI:MGI:5437407, MGI:MGI:6201960 NCBI chr10:80,706,956...80,742,303
Ensembl chr10:80,706,956...80,742,264
JBrowse link
G Ap3m1 adaptor-related protein complex 3, mu 1 subunit IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr14:21,033,106...21,052,553
Ensembl chr14:21,031,442...21,052,508
JBrowse link
G Ap3m2 adaptor-related protein complex 3, mu 2 subunit IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 8:22,787,354...22,807,292
Ensembl chr 8:22,787,354...22,805,622
JBrowse link
G Ap3s1 adaptor-related protein complex 3, sigma 1 subunit IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr18:46,741,694...46,790,826
Ensembl chr18:46,741,876...46,790,826
JBrowse link
G Ap3s2 adaptor-related protein complex 3, sigma 2 subunit IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 7:79,875,325...79,920,640
Ensembl chr 7:79,875,325...79,920,649
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr10:128,919,914...128,923,524
Ensembl chr10:128,917,882...128,924,035
JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex-1, subunit 2 IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr19:44,139,246...44,146,470
Ensembl chr19:44,139,246...44,146,446
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 7:19,505,783...19,508,380
Ensembl chr 7:19,504,486...19,508,367
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 5:36,747,374...36,748,679
Ensembl chr 5:36,747,378...36,748,650
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex-1, subunit 5, muted IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr13:38,602,698...38,637,117
Ensembl chr13:38,592,842...38,635,109
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 2:122,738,505...122,749,487
Ensembl chr 2:122,738,503...122,749,475
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IMP
IBA
(MGI:MGI:5437407|PMID:21998198)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:21998198 MGI:MGI:5437407, MGI:MGI:6201960 NCBI chr13:44,922,079...45,002,096
Ensembl chr13:44,922,075...45,002,147
JBrowse link
G Madd MAP-kinase activating death domain IMP
IDA
(MGI:MGI:6189386|PMID:18849981) SynGO
MGI
PMID:18849981 MGI:MGI:6189386 NCBI chr 2:91,137,360...91,184,006
Ensembl chr 2:91,137,360...91,183,837
JBrowse link
G Snapin SNAP-associated protein IMP (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 3:90,488,026...90,491,013
Ensembl chr 3:90,488,026...90,491,033
JBrowse link
G Trim46 tripartite motif-containing 46 IMP (MGI:MGI:5708763|PMID:26671463) MGI PMID:26671463 MGI:MGI:5708763 NCBI chr 3:89,234,169...89,246,358
Ensembl chr 3:89,234,177...89,246,309
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr19:5,092,868...5,098,521
Ensembl chr19:5,092,868...5,098,521
JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog IMP (MGI:MGI:3629385|PMID:16675393), (MGI:MGI:3772418|PMID:18082964) CACAO PMID:16675393, PMID:18082964 MGI:MGI:3629385, MGI:MGI:3772418 NCBI chr19:32,757,577...32,826,160
Ensembl chr19:32,757,497...32,826,160
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Borcs5 BLOC-1 related complex subunit 5 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:134,639,512...134,711,184
Ensembl chr 6:134,639,510...134,711,187
JBrowse link
G Map2 microtubule-associated protein 2 ISO MGI GO_REF:0000096, MGI:MGI:4417868 NCBI chr 1:66,175,202...66,442,583
Ensembl chr 1:66,175,273...66,442,583
JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 BCL2-like 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 2:152,758,732...152,833,803
Ensembl chr 2:152,780,668...152,831,728
JBrowse link
G Cdh2 cadherin 2 IMP (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chr18:16,588,877...16,809,246
Ensembl chr18:16,588,877...16,809,246
JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 IDA (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chr 5:19,219,387...20,704,792
Ensembl chr 5:19,227,036...20,704,792
JBrowse link
G Nlgn1 neuroligin 1 IDA (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chr 3:25,421,808...26,332,866
Ensembl chr 3:25,426,215...26,332,460
JBrowse link
G Nlgn2 neuroligin 2 IDA (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chr11:69,823,123...69,837,784
Ensembl chr11:69,823,122...69,837,784
JBrowse link
G Nlgn3 neuroligin 3 IMP (MGI:MGI:5286761|PMID:21808020) CACAO PMID:21808020 MGI:MGI:5286761 NCBI chr  X:101,299,179...101,321,350
Ensembl chr  X:101,299,168...101,325,963
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO MGI GO_REF:0000096, MGI:MGI:4417868 NCBI chr 7:90,130,192...90,209,447
Ensembl chr 7:90,130,213...90,213,465
JBrowse link
G Snap91 synaptosomal-associated protein 91 ISO MGI GO_REF:0000096, MGI:MGI:4417868 NCBI chr 9:86,765,923...86,880,734
Ensembl chr 9:86,765,923...86,880,654
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 (facilitated glucose transporter), member 4 ISO MGI GO_REF:0000096, MGI:MGI:4417868 NCBI chr11:69,942,286...69,948,216
Ensembl chr11:69,942,539...69,948,188
JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcdh17 protocadherin 17 IMP (MGI:MGI:5514320|PMID:23684785) MGI PMID:23684785 MGI:MGI:5514320 NCBI chr14:84,443,563...84,537,565
Ensembl chr14:84,443,563...84,539,002
JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 IMP
IBA
(MGI:MGI:4941068|PMID:21307259)
(MGI:MGI:6201960|PMID:21873635)
ParkinsonsUK-UCL
GO_Central
PMID:21307259, PMID:21873635 MGI:MGI:4941068, MGI:MGI:6201960 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO MGI GO_REF:0000096, MGI:MGI:4417868 NCBI chr 7:90,130,192...90,209,447
Ensembl chr 7:90,130,213...90,213,465
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr11:59,211,412...59,228,267
Ensembl chr11:59,211,412...59,228,270
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor-related protein complex 1, sigma 2 subunit IMP
IDA
(MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chr  X:163,908,454...163,933,666
Ensembl chr  X:163,909,017...163,933,666
JBrowse link
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit IMP
IDA
(MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chr13:94,358,960...94,566,316
Ensembl chr13:94,358,960...94,566,317
JBrowse link
G Ap3d1 adaptor-related protein complex 3, delta 1 subunit ISO
IBA
IDA
IMP
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:6189637|PMID:11588176)
RGD
GO_Central
SynGO
MGI
PMID:11588176, PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:6189637, MGI:MGI:6201960 NCBI chr10:80,706,956...80,742,303
Ensembl chr10:80,706,956...80,742,264
JBrowse link
G Btbd8 BTB (POZ) domain containing 8 IMP
IDA
(MGI:MGI:6104538|PMID:29262337) MGI PMID:29262337 MGI:MGI:6104538 NCBI chr 5:107,437,930...107,512,560
Ensembl chr 5:107,437,997...107,511,207
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 IGI
IBA
(MGI:MGI:5285027|PMID:21689597)
(MGI:MGI:6201960|PMID:21873635)
SynGO
GO_Central
PMID:21689597, PMID:21873635 MGI:MGI:5285027, MGI:MGI:6201960 NCBI chr 2:32,308,471...32,353,349
Ensembl chr 2:32,308,471...32,353,338
JBrowse link
G Dnm2 dynamin 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 9:21,424,908...21,507,759
Ensembl chr 9:21,424,908...21,507,759
JBrowse link
G Dnm3 dynamin 3 IGI
IBA
(MGI:MGI:5285027|PMID:21689597)
(MGI:MGI:6201960|PMID:21873635)
SynGO
GO_Central
PMID:21689597, PMID:21873635 MGI:MGI:5285027, MGI:MGI:6201960 NCBI chr 1:161,982,450...162,478,321
Ensembl chr 1:161,982,453...162,478,034
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 7:90,130,192...90,209,447
Ensembl chr 7:90,130,213...90,213,465
JBrowse link
G Snap91 synaptosomal-associated protein 91 IMP
IBA
(MGI:MGI:5707086|PMID:26412491)
(MGI:MGI:6201960|PMID:21873635)
SynGO
GO_Central
PMID:21873635, PMID:26412491 MGI:MGI:5707086, MGI:MGI:6201960 NCBI chr 9:86,765,923...86,880,734
Ensembl chr 9:86,765,923...86,880,654
JBrowse link
synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin (cadherin associated protein), beta 1 IDA
IMP
(MGI:MGI:2680876|PMID:14622577) SynGO
MGI
PMID:14622577 MGI:MGI:2680876 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Nlgn1 neuroligin 1 ISO
IDA
(MGI:MGI:2665153|PMID:12796785), (MGI:MGI:3694190|PMID:10892652) RGD
BHF-UCL
PMID:10892652, PMID:12796785 GO_REF:0000096, MGI:MGI:2665153, MGI:MGI:3694190, MGI:MGI:4417868 NCBI chr 3:25,421,808...26,332,866
Ensembl chr 3:25,426,215...26,332,460
JBrowse link
G Nrxn1 neurexin I IDA (MGI:MGI:2665153|PMID:12796785) BHF-UCL PMID:12796785 MGI:MGI:2665153 NCBI chr17:90,033,644...91,093,159
Ensembl chr17:90,033,631...91,093,071
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) IMP
IDA
(MGI:MGI:4442284|PMID:20332206) SynGO PMID:20332206 MGI:MGI:4442284 NCBI chr 5:14,514,906...14,863,465
Ensembl chr 5:14,514,918...14,863,459
JBrowse link
G Rab3a RAB3A, member RAS oncogene family IMP (MGI:MGI:4830800|PMID:20338242) UniProt PMID:20338242 MGI:MGI:4830800 NCBI chr 8:70,754,703...70,758,608
Ensembl chr 8:70,754,679...70,758,677
JBrowse link
G Syn1 synapsin I IMP (MGI:MGI:76610|PMID:7568108) SynGO PMID:7568108 MGI:MGI:76610 NCBI chr  X:20,860,511...20,920,918
Ensembl chr  X:20,860,511...20,921,004
JBrowse link
G Syn2 synapsin II IDA
IMP
(MGI:MGI:3831450|PMID:18945891)
(MGI:MGI:3831450|PMID:18945891), (MGI:MGI:4830800|PMID:20338242)
SynGO
UniProt
PMID:18945891, PMID:20338242 MGI:MGI:3831450, MGI:MGI:4830800 NCBI chr 6:115,134,902...115,282,626
Ensembl chr 6:115,134,902...115,282,006
JBrowse link
G Syn3 synapsin III IMP
IDA
(MGI:MGI:2180939|PMID:12040043) SynGO PMID:12040043 MGI:MGI:2180939 NCBI chr10:86,048,746...86,498,926
Ensembl chr10:86,055,125...86,498,896
JBrowse link
G Syndig1 synapse differentiation inducing 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 2:149,830,783...150,004,392
Ensembl chr 2:149,829,211...150,004,392
JBrowse link
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin-dependent kinase 5 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 5:24,407,597...24,423,587
Ensembl chr 5:24,418,241...24,423,530
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 IMP (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr14:66,802,864...66,911,041
Ensembl chr14:66,802,864...66,868,688
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IMP (MGI:MGI:3761431|PMID:17418794) MGI PMID:17418794 MGI:MGI:3761431 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Kif5a kinesin family member 5A IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:127,225,695...127,266,348
Ensembl chr10:127,225,696...127,263,348
JBrowse link
G Kif5b kinesin family member 5B IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr18:6,201,005...6,241,524
Ensembl chr18:6,201,002...6,242,174
JBrowse link
G Kif5c kinesin family member 5C IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:49,619,286...49,774,778
Ensembl chr 2:49,619,298...49,774,778
JBrowse link
G Lin7a lin-7 homolog A (C. elegans) IMP (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chr10:107,271,549...107,425,146
Ensembl chr10:107,271,686...107,421,474
JBrowse link
G Mylk2 myosin, light polypeptide kinase 2, skeletal muscle ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 2:152,911,281...152,923,065
Ensembl chr 2:152,911,352...152,923,068
JBrowse link
G Nlgn1 neuroligin 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 3:25,421,808...26,332,866
Ensembl chr 3:25,426,215...26,332,460
JBrowse link
G Rab3a RAB3A, member RAS oncogene family TAS
IDA
(MGI:MGI:5586801|PMID:16141272)
(MGI:MGI:3653776|PMID:11598194)
ParkinsonsUK-UCL
UniProt
PMID:11598194, PMID:16141272 MGI:MGI:3653776, MGI:MGI:5586801 NCBI chr 8:70,754,703...70,758,608
Ensembl chr 8:70,754,679...70,758,677
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein subunit 1 NAS (MGI:MGI:3652690|PMID:16782817) ParkinsonsUK-UCL PMID:16782817 MGI:MGI:3652690 NCBI chr 1:127,868,755...127,943,876
Ensembl chr 1:127,868,773...127,943,868
JBrowse link
G Snapin SNAP-associated protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:90,488,026...90,491,013
Ensembl chr 3:90,488,026...90,491,033
JBrowse link
G Snca synuclein, alpha IMP (MGI:MGI:2388931|PMID:12388586) MGI PMID:12388586 MGI:MGI:2388931 NCBI chr 6:60,731,573...60,829,855
Ensembl chr 6:60,731,575...60,829,855
JBrowse link
G Spg11 SPG11, spatacsin vesicle trafficking associated ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 2:122,053,526...122,119,434
Ensembl chr 2:122,053,520...122,118,386
JBrowse link
G Synj1 synaptojanin 1 IMP (MGI:MGI:1346710|PMID:10535736) MGI PMID:10535736 MGI:MGI:1346710 NCBI chr16:90,936,092...91,013,727
Ensembl chr16:90,936,092...91,011,308
JBrowse link
G Syt4 synaptotagmin IV TAS (MGI:MGI:68023|PMID:8058779) UniProtKB PMID:8058779 MGI:MGI:68023 NCBI chr18:31,437,808...31,447,415
Ensembl chr18:31,437,808...31,447,406
JBrowse link
G Tmem230 transmembrane protein 230 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:132,239,492...132,249,059
Ensembl chr 2:132,239,492...132,247,807
JBrowse link
G Tor1a torsin family 1, member A (torsin A) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:30,960,561...30,967,918
Ensembl chr 2:30,960,627...30,967,933
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    localization 6243
      cellular localization 2857
        organelle localization 562
          vesicle localization 178
            synaptic vesicle localization 61
              establishment of synaptic vesicle localization 0
              synaptic vesicle clustering + 18
              synaptic vesicle transport + 48
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.