Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle localization
go back to main search page
Accession:GO:0097479 term browser browse the term
Definition:Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location.
Synonyms:exact_synonym: establishment and maintenance of synaptic vesicle localization;   establishment and maintenance of synaptic vesicle position;   synaptic vesicle localisation


show annotations for term's descendants           Sort by:
 
anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:86,875,922...87,142,722
Ensembl chr 2:86,873,081...87,142,744
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 7:52,202,649...52,294,154
Ensembl chr 7:52,202,778...52,294,152
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:76,428,443...76,471,266
Ensembl chr 2:76,428,436...76,471,258
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 IEA Ensembl GO_REF:0000107 NCBI chr14:76,813,158...76,835,674
Ensembl chr14:76,801,005...76,835,678
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 IEA Ensembl GO_REF:0000107 NCBI chr17:11,167,118...11,190,857
Ensembl chr17:11,167,161...11,190,856
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:119,965,539...120,039,948
Ensembl chr 2:119,965,858...120,045,257
JBrowse link
G AP3S2 adaptor-related protein complex 3, sigma 2 subunit IEA Ensembl GO_REF:0000107 NCBI chr 7:55,395,159...55,462,352
Ensembl chr 7:55,391,913...55,462,823
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:21,156,460...21,160,738
Ensembl chr 5:21,147,767...21,160,738
JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr14:111,391,083...111,397,609
Ensembl chr14:111,388,898...111,397,622
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 ISS UniProt GO_REF:0000024 NCBI chr 6:51,590,497...51,591,222
Ensembl chr 6:51,590,497...51,591,222
JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:4,093,619...4,095,790
Ensembl chr 8:4,095,094...4,096,059
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 7:5,324,467...5,363,346
Ensembl chr 7:5,321,648...5,364,268
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 IEA Ensembl GO_REF:0000107 NCBI chr 1:126,168,944...126,184,813
Ensembl chr 1:126,165,991...126,184,870
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 7:11,602,470...11,720,156
Ensembl chr 7:11,600,792...11,748,548
JBrowse link
G MADD MAP kinase activating death domain ISO (MGI:MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:MGI:6189386 NCBI chr 2:15,270,783...15,315,459
Ensembl chr 2:15,270,788...15,326,202
JBrowse link
G SNAPIN SNAP associated protein ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chr 4:95,987,524...95,989,527
Ensembl chr 4:95,984,358...95,989,474
JBrowse link
G TRIM46 tripartite motif containing 46 IEA Ensembl GO_REF:0000107 NCBI chr 4:94,632,073...94,642,756
Ensembl chr 4:94,632,075...94,661,540
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr 2:6,102,347...6,109,424 JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTEN phosphatase and tensin homolog ISO (MGI:MGI:3629385|PMID:16675393), (MGI:MGI:3772418|PMID:18082964) CACAO PMID:16675393, PMID:18082964 MGI:MGI:3629385, MGI:MGI:3772418 NCBI chr14:99,929,590...100,021,619 JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:59,969,806...60,072,976
Ensembl chr 5:59,970,260...60,072,940
JBrowse link
G MAP2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr15:112,156,578...112,462,932
Ensembl chr15:112,156,578...112,460,171
JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr17:35,366,139...35,415,798
Ensembl chr17:35,366,141...35,415,359
JBrowse link
G CDH2 cadherin 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:112,396,713...112,629,073
Ensembl chr 6:112,396,721...112,628,432
JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:100,846,693...102,171,199
Ensembl chr 9:100,847,212...102,169,003
JBrowse link
G NLGN1 neuroligin 1 IEA Ensembl GO_REF:0000107 NCBI chr13:111,851,007...112,727,202
Ensembl chr13:112,036,053...112,725,618
JBrowse link
G NLGN3 neuroligin 3 IEA Ensembl GO_REF:0000107 NCBI chr  X:57,174,506...57,204,770
Ensembl chr  X:57,176,103...57,201,486
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:22851330 RGD:13506174 NCBI chr 9:19,835,934...19,947,239
Ensembl chr 9:19,835,938...20,104,632
JBrowse link
G SNAP91 synaptosome associated protein 91 ISO RGD PMID:22851330 RGD:13506174 NCBI chr 1:82,540,998...82,698,652
Ensembl chr 1:82,540,985...82,697,342
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC2A4 solute carrier family 2 member 4 ISO PMID:28111082 SynGO PMID:28111082 RGD:13702195 NCBI chr12:52,628,746...52,634,965
Ensembl chr12:52,628,450...52,634,967
JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCDH17 protocadherin 17 IEA Ensembl GO_REF:0000107 NCBI chr11:30,510,779...30,611,732
Ensembl chr11:30,511,261...30,611,727
JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRK2 leucine rich repeat kinase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:71,800,337...71,945,828
Ensembl chr 5:71,800,240...71,944,938
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:18842885 RGD:8554167 NCBI chr 9:19,835,934...19,947,239
Ensembl chr 9:19,835,938...20,104,632
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:9590176 RGD:9684955 NCBI chr 2:51,219,597...51,237,640
Ensembl chr 2:51,219,667...51,237,639
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1S2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chr  X:12,367,785...12,397,672
Ensembl chr  X:12,367,156...12,398,496
JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chr 2:86,875,922...87,142,722
Ensembl chr 2:86,873,081...87,142,744
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:76,428,443...76,471,266
Ensembl chr 2:76,428,436...76,471,258
JBrowse link
G KIAA1107 KIAA1107 ortholog ISO (MGI:MGI:6104538|PMID:29262337) MGI PMID:29262337 MGI:MGI:6104538 NCBI chr 4:124,859,271...124,950,420
Ensembl chr 4:124,858,099...124,950,427
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNM1 dynamin 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:268,653,045...268,702,233
Ensembl chr 1:268,653,039...268,702,223
JBrowse link
G DNM2 dynamin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:69,474,011...69,574,427
Ensembl chr 2:69,474,031...69,574,424
JBrowse link
G DNM3 dynamin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:114,262,782...114,805,252
Ensembl chr 9:114,262,782...114,805,242
JBrowse link
G MX1 MX dynamin like GTPase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:204,843,049...204,868,927
Ensembl chr13:204,843,754...204,868,922
JBrowse link
G MX2 myxovirus (influenza virus) resistance 2 (mouse) IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:204,798,633...204,821,612
Ensembl chr13:204,798,630...204,831,957
JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:19,835,934...19,947,239
Ensembl chr 9:19,835,938...20,104,632
JBrowse link
G SNAP91 synaptosome associated protein 91 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:82,540,998...82,698,652
Ensembl chr 1:82,540,985...82,697,342
JBrowse link
synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G NLGN1 neuroligin 1 IEA Ensembl GO_REF:0000107 NCBI chr13:111,851,007...112,727,202
Ensembl chr13:112,036,053...112,725,618
JBrowse link
G NRXN1 neurexin 1 ISO (MGI:MGI:2665153|PMID:12796785) BHF-UCL PMID:12796785 MGI:MGI:2665153 NCBI chr 3:89,799,426...90,914,205
Ensembl chr 3:89,799,543...90,914,205
JBrowse link
G PCLO piccolo presynaptic cytomatrix protein ISO (MGI:MGI:4442284|PMID:20332206) SynGO PMID:20332206 MGI:MGI:4442284 NCBI chr 9:97,114,503...97,513,081
Ensembl chr 9:97,114,511...97,513,072
JBrowse link
G RAB3A RAB3A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr 2:59,603,090...59,609,773
Ensembl chr 2:59,603,117...59,609,767
JBrowse link
G SYN1 synapsin I IEA Ensembl GO_REF:0000107 NCBI chr  X:42,090,245...42,142,254
Ensembl chr  X:42,090,245...42,142,224
JBrowse link
G SYN2 synapsin II IEA Ensembl GO_REF:0000107 NCBI chr13:68,050,015...68,221,504
Ensembl chr13:68,050,186...68,221,496
JBrowse link
G SYN3 synapsin III ISO (MGI:MGI:2180939|PMID:12040043) SynGO PMID:12040043 MGI:MGI:2180939 NCBI chr 5:12,017,741...12,501,995
Ensembl chr 5:12,017,784...12,578,953
JBrowse link
G SYNDIG1 synapse differentiation inducing 1 ISO PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chr17:30,621,622...30,709,387
Ensembl chr17:30,638,039...30,709,382
JBrowse link
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5 cyclin dependent kinase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:6,166,914...6,171,157 JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G DPYSL2 dihydropyrimidinase like 2 ISO RGD PMID:19755421 RGD:2316240 NCBI chr14:10,428,598...10,545,705
Ensembl chr14:10,427,500...10,545,703
JBrowse link
G EIF3J eukaryotic translation initiation factor 3 subunit J IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:126,998,613...127,019,264
Ensembl chr 1:126,997,199...127,019,148
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:MGI:3761431|PMID:17418794) MGI PMID:17418794 MGI:MGI:3761431 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,710...131,579,703
JBrowse link
G KIF5B kinesin family member 5B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:42,637,105...42,693,551
Ensembl chr10:42,637,109...42,693,491
JBrowse link
G KIF5C kinesin family member 5C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:3,190,341...3,361,470
Ensembl chr15:3,190,341...3,361,467
JBrowse link
G LIN7A lin-7 homolog A, crumbs cell polarity complex component IEA Ensembl GO_REF:0000107 NCBI chr 5:100,533,630...100,686,709
Ensembl chr 5:100,538,065...100,681,323
JBrowse link
G MYLK2 myosin light chain kinase 2 ISO Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chr17:35,499,828...35,513,096
Ensembl chr17:35,499,908...35,513,088
JBrowse link
G NLGN1 neuroligin 1 ISO PMID:19628693 CACAO PMID:19628693 RGD:8554760 NCBI chr13:111,851,007...112,727,202
Ensembl chr13:112,036,053...112,725,618
JBrowse link
G RAB3A RAB3A, member RAS oncogene family IEA Ensembl GO_REF:0000107 NCBI chr 2:59,603,090...59,609,773
Ensembl chr 2:59,603,117...59,609,767
JBrowse link
G SNAPIN SNAP associated protein IEA Ensembl GO_REF:0000107 NCBI chr 4:95,987,524...95,989,527
Ensembl chr 4:95,984,358...95,989,474
JBrowse link
G SNCA synuclein alpha IEA Ensembl GO_REF:0000107 NCBI chr 8:129,247,724...129,388,307
Ensembl chr 8:129,248,819...129,388,307
JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin IEA Ensembl GO_REF:0000107 NCBI chr 1:126,890,464...126,998,014
Ensembl chr 1:126,890,892...126,998,059
JBrowse link
G SYNJ1 synaptojanin 1 ISO (MGI:MGI:1346710|PMID:10535736) MGI PMID:10535736 MGI:MGI:1346710 NCBI chr13:196,230,101...196,330,512
Ensembl chr13:196,230,089...196,330,465
JBrowse link
G TMEM230 transmembrane protein 230 ISO (PMID:27270108) UniProtKB PMID:27270108 NCBI chr17:14,125,728...14,136,443 JBrowse link
G TOR1A torsin family 1 member A IEA Ensembl GO_REF:0000107 NCBI chr 1:269,975,919...269,985,478
Ensembl chr 1:269,974,892...269,985,508
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    localization 5926
      cellular localization 2776
        organelle localization 549
          vesicle localization 179
            synaptic vesicle localization 60
              establishment of synaptic vesicle localization 0
              synaptic vesicle clustering + 17
              synaptic vesicle transport + 48
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.