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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle localization
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Accession:GO:0097479 term browser browse the term
Definition:Any process in which a synaptic vesicle or vesicles are transported to, and/or maintained in, a specific location.
Synonyms:exact_synonym: establishment and maintenance of synaptic vesicle localization;   establishment and maintenance of synaptic vesicle position;   synaptic vesicle localisation


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anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936549:5,964,240...6,205,245 JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936483:17,301,969...17,336,962 JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936588:1,223,646...1,262,577 JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936521:5,023,896...5,050,822 JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936785:503,615...525,361 JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936742:1,007,684...1,088,272 JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936646:186,422...190,870 JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004939661:2,128...6,384 JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936706:1,702,154...1,704,366 JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936477:18,618,330...18,619,512 JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936534:4,550,592...4,584,482 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936471:8,209,091...8,226,249 JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936552:1,787,687...1,926,516 JBrowse link
G Madd MAP kinase activating death domain ISO (MGI:MGI:6189386|PMID:18849981) MGI PMID:18849981 MGI:MGI:6189386 NCBI chrNW_004936562:1,891,120...1,936,559 JBrowse link
G Snapin SNAP associated protein ISO (MGI:MGI:5437407|PMID:21998198) UniProtKB PMID:21998198 MGI:MGI:5437407 NCBI chrNW_004936580:3,449,585...3,464,709 JBrowse link
G Trim46 tripartite motif containing 46 ISO (MGI:MGI:5708763|PMID:26671463) MGI PMID:26671463 MGI:MGI:5708763 NCBI chrNW_004936580:4,678,855...4,690,222 JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004936599:3,310,873...3,316,575 JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog ISO (MGI:MGI:3629385|PMID:16675393), (MGI:MGI:3772418|PMID:18082964) CACAO PMID:16675393, PMID:18082964 MGI:MGI:3629385, MGI:MGI:3772418 NCBI chrNW_004936735:1,252,414...1,338,318 JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936845:475,406...752,600 JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 BCL2 like 1 ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004936485:18,654,046...18,707,324 JBrowse link
G Cdh2 cadherin 2 ISO (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chrNW_004936550:6,885,484...7,067,001 JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 ISO (MGI:MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:MGI:4457945 NCBI chrNW_004936479:21,373,917...22,062,498 JBrowse link
G Nlgn1 neuroligin 1 ISO (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chrNW_004936703:951,935...1,415,991 JBrowse link
G Nlgn2 neuroligin 2 ISO (MGI:MGI:5284797|PMID:15620359) BHF-UCL PMID:15620359 MGI:MGI:5284797 NCBI chrNW_004936595:692,340...704,650 JBrowse link
G Nlgn3 neuroligin 3 ISO (MGI:MGI:5286761|PMID:21808020) CACAO PMID:21808020 MGI:MGI:5286761 NCBI chrNW_004936762:435,729...458,261 JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:22851330 RGD:13506174 NCBI chrNW_004936498:13,785,638...13,885,931 JBrowse link
G Snap91 synaptosome associated protein 91 ISO RGD PMID:22851330 RGD:13506174 NCBI chrNW_004936510:7,222,200...7,345,138 JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 ISO PMID:28111082 SynGO PMID:28111082 RGD:13702195 NCBI chrNW_004936595:567,267...574,051 JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcdh17 protocadherin 17 ISO (MGI:MGI:5514320|PMID:23684785) MGI PMID:23684785 MGI:MGI:5514320 NCBI chrNW_004936820:764,016...860,325 JBrowse link
regulation of synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine rich repeat kinase 2 ISO (MGI:MGI:4941068|PMID:21307259) ParkinsonsUK-UCL PMID:21307259 MGI:MGI:4941068 NCBI chrNW_004936607:628,469...761,117 JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:18842885 RGD:8554167 NCBI chrNW_004936498:13,785,638...13,885,931 JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP ribosylation factor 1 ISO RGD PMID:9590176 RGD:9684955 NCBI chrNW_004936864:117,510...119,612 JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 ISO (MGI:MGI:5617942|PMID:20203623) SynGO PMID:20203623 MGI:MGI:5617942 NCBI chrNW_004936470:5,260,984...5,301,552 JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:MGI:6189637|PMID:11588176) SynGO PMID:11588176 MGI:MGI:6189637 NCBI chrNW_004936549:5,964,240...6,205,245 JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:MGI:6189637|PMID:11588176)
PMID:22539861
SynGO PMID:11588176, PMID:22539861 MGI:MGI:6189637, RGD:12050120 NCBI chrNW_004936588:1,223,646...1,262,577 JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 ISO (MGI:MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:MGI:5285027 NCBI chrNW_004936487:15,767,897...15,797,722 JBrowse link
G Dnm3 dynamin 3 ISO (MGI:MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:MGI:5285027 NCBI chrNW_004936481:14,971,977...15,411,253 JBrowse link
G Snap91 synaptosome associated protein 91 ISO (MGI:MGI:5707086|PMID:26412491) SynGO PMID:26412491 MGI:MGI:5707086 NCBI chrNW_004936510:7,222,200...7,345,138 JBrowse link
synaptic vesicle clustering term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Nlgn1 neuroligin 1 ISO PMID:20534458
PMID:19628693
(MGI:MGI:2665153|PMID:12796785), (MGI:MGI:3694190|PMID:10892652)
BHF-UCL PMID:10892652, PMID:12796785, PMID:19628693, PMID:20534458 MGI:MGI:2665153, MGI:MGI:3694190, RGD:10047242, RGD:8554760 NCBI chrNW_004936703:951,935...1,415,991 JBrowse link
G Nrxn1 neurexin 1 ISO (MGI:MGI:2665153|PMID:12796785) BHF-UCL PMID:12796785 MGI:MGI:2665153 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Pclo piccolo presynaptic cytomatrix protein ISO (MGI:MGI:4442284|PMID:20332206) SynGO PMID:20332206 MGI:MGI:4442284 NCBI chrNW_004936734:1,273,055...1,674,913 JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO (MGI:MGI:4830800|PMID:20338242) UniProt PMID:20338242 MGI:MGI:4830800 NCBI chrNW_004936596:2,990,367...2,995,935 JBrowse link
G Syn1 synapsin I ISO (MGI:MGI:76610|PMID:7568108) SynGO PMID:7568108 MGI:MGI:76610 NCBI chrNW_004936502:13,334,998...13,387,082 JBrowse link
G Syn2 synapsin II ISO (MGI:MGI:3831450|PMID:18945891)
(MGI:MGI:3831450|PMID:18945891), (MGI:MGI:4830800|PMID:20338242)
SynGO
UniProt
PMID:18945891, PMID:20338242 MGI:MGI:3831450, MGI:MGI:4830800 NCBI chrNW_004936602:1,460,602...1,506,509 JBrowse link
G Syn3 synapsin III ISO (MGI:MGI:2180939|PMID:12040043) SynGO PMID:12040043 MGI:MGI:2180939 NCBI chrNW_004936492:6,836,441...7,253,867 JBrowse link
G Syndig1 synapse differentiation inducing 1 ISO PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chrNW_004936620:1,165,312...1,359,127 JBrowse link
synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Dpysl2 dihydropyrimidinase like 2 ISO RGD PMID:19755421 RGD:2316240 NCBI chrNW_004936757:311,317...422,870 JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (MGI:MGI:3761431|PMID:17418794) MGI PMID:17418794 MGI:MGI:3761431 NCBI chrNW_004936486:10,506,680...10,606,272 JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component ISO (MGI:MGI:2680876|PMID:14622577) MGI PMID:14622577 MGI:MGI:2680876 NCBI chrNW_004936698:1,675,329...1,810,845 JBrowse link
G Mylk2 myosin light chain kinase 2 ISO Mlck controls the movemnet of synaptic vesicles RGD PMID:15980175 RGD:1600508 NCBI chrNW_004936485:18,782,890...18,795,942 JBrowse link
G Nlgn1 neuroligin 1 ISO PMID:19628693 CACAO PMID:19628693 RGD:8554760 NCBI chrNW_004936703:951,935...1,415,991 JBrowse link
G Rab3a RAB3A, member RAS oncogene family ISO (MGI:MGI:3653776|PMID:11598194) UniProt PMID:11598194 MGI:MGI:3653776 NCBI chrNW_004936596:2,990,367...2,995,935 JBrowse link
G Snapin SNAP associated protein ISO (PMID:18167355) UniProtKB PMID:18167355 NCBI chrNW_004936580:3,449,585...3,464,709 JBrowse link
G Snca synuclein alpha ISO (MGI:MGI:2388931|PMID:12388586) MGI PMID:12388586 MGI:MGI:2388931 NCBI chrNW_004936685:2,077,017...2,175,298 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin ISO (PMID:24794856) UniProtKB PMID:24794856 NCBI chrNW_004936471:7,540,647...7,618,783 JBrowse link
G Synj1 synaptojanin 1 ISO (MGI:MGI:1346710|PMID:10535736) MGI PMID:10535736 MGI:MGI:1346710 NCBI chrNW_004936500:9,484,571...9,565,980 JBrowse link
G Tmem230 transmembrane protein 230 ISO (PMID:27270108) UniProtKB PMID:27270108 NCBI chrNW_004936485:13,772,093...13,779,201 JBrowse link
G Tor1a torsin family 1 member A ISO (PMID:18167355) UniProtKB PMID:18167355 NCBI chrNW_004936487:17,012,661...17,020,657 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12001
    localization 4781
      cellular localization 2324
        organelle localization 452
          vesicle localization 137
            synaptic vesicle localization 51
              establishment of synaptic vesicle localization 0
              synaptic vesicle clustering + 18
              synaptic vesicle transport + 38
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.