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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary base
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Accession:GO:0097546 term browser browse the term
Definition:Area of the cilium (also called flagellum) where the basal body and the axoneme are anchored to the plasma membrane. The ciliary base encompasses the distal part of the basal body, transition fibers and transition zone and is structurally and functionally very distinct from the rest of the cilium. In this area proteins are sorted and filtered before entering the cilium, and many ciliary proteins localize specifically to this area.
Comment:Due to resolution issues, researchers are often unable to assign protein localization to more specific ciliary compartments such as the basal body, transition fibers or transition zone, and instead refer to 'ciliary base'. The terms GO:0036064 'ciliary basal body', GO:0097539 'ciliary transition fiber' and GO:0035869 'ciliary transition zone' represent strictly defined compartments at the ciliary base and should be used for annotation whenever possible. Also, note that cilia and eukaryotic flagella are deemed to be equivalent.
Synonyms:exact_synonym: cilial base;   cilium base;   flagellar base;   flagellum base


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ciliary base term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Armc4 armadillo repeat containing 4 JBrowse link 17 60,283,926 60,474,289 RGD:1624291
G Cep126 centrosomal protein 126 JBrowse link 8 6,237,838 6,305,127 RGD:1624291
RGD:13792537
G Cfap36 cilia and flagella associated protein 36 JBrowse link 14 113,618,954 113,644,874 RGD:1624291
G Cibar1 CBY1 interacting BAR domain containing 1 JBrowse link 5 25,732,457 25,750,953 RGD:1624291
G Cilk1 ciliogenesis associated kinase 1 JBrowse link 8 85,413,998 85,473,374 RGD:1600115
RGD:1624291
G Cluap1 clusterin associated protein 1 JBrowse link 10 11,847,058 11,878,792 RGD:1624291
G Disc1 DISC1 scaffold protein JBrowse link 19 57,818,838 58,069,992 RGD:1624291
G Dnali1 dynein, axonemal, light intermediate chain 1 JBrowse link 5 143,053,365 143,062,203 RGD:1624291
G Fam183a family with sequence similarity 183 member A JBrowse link 10 44,736,547 44,746,907 RGD:1624291
RGD:13792537
G Fank1 fibronectin type III and ankyrin repeat domains 1 JBrowse link 1 205,842,469 205,954,152 RGD:1624291
G Ift122 intraflagellar transport 122 JBrowse link 4 147,756,574 147,826,983 RGD:1624291
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Ift52 intraflagellar transport 52 JBrowse link 3 159,388,868 159,413,358 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
RGD:13792537
G Invs inversin JBrowse link 5 64,031,131 64,180,830 RGD:1624291
G MGC94199 similar to RIKEN cDNA 2610301B20; EST AI428449 JBrowse link 5
5
24,145,829
23,358,464
24,165,467
23,377,697
RGD:1624291
G Mlf1 myeloid leukemia factor 1 JBrowse link 2 164,549,423 164,582,645 RGD:1624291
G Mok MOK protein kinase JBrowse link 6 135,228,755 135,259,645 RGD:1624291
G Nek8 NIMA-related kinase 8 JBrowse link 10 65,404,489 65,439,059 RGD:1624291
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp3 nephrocystin 3 JBrowse link 8 112,526,553 112,575,745 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
RGD:13792537
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:9685166
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 25,095,089 25,118,869 RGD:1624291
RGD:1600115
G Prkacb protein kinase cAMP-activated catalytic subunit beta JBrowse link 2 252,602,197 252,691,886 RGD:1624291
G Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta JBrowse link 6 51,265,509 51,356,383 RGD:1624291
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1624291
G RGD1561795 similar to RIKEN cDNA 1700012B09 JBrowse link 8 13,275,270 13,292,587 RGD:1624291
RGD:13792537
G Spaca9 sperm acrosome associated 9 JBrowse link 3 7,269,851 7,279,253 RGD:1624291
RGD:13792537
G Tctex1d2 Tctex1 domain containing 2 JBrowse link 11 71,593,302 71,601,662 RGD:1624291
G Traf3ip1 TRAF3 interacting protein 1 JBrowse link 9 98,621,499 98,658,223 RGD:1600115
RGD:1624291
G Ttc26 tetratricopeptide repeat domain 26 JBrowse link 4 66,090,178 66,147,998 RGD:13792537
G Tulp3 TUB like protein 3 JBrowse link 4 161,636,084 161,677,807 RGD:1624291
G Wdr60 WD repeat domain 60 JBrowse link 6 144,069,077 144,124,975 RGD:1624291

Term paths to the root
Path 1
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  cellular_component 19843
    cellular anatomical entity 19457
      ciliary base 34
Path 2
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      cell projection 2468
        plasma membrane bounded cell projection 2408
          cilium 645
            ciliary base 34
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.