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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell cilium
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Accession:GO:0097733 term browser browse the term
Definition:A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.
Synonyms:exact_synonym: photoreceptor cilium


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photoreceptor cell cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 JBrowse link 13 90,605,792 90,642,032 RGD:1624291
G Cfap410 cilia and flagella associated protein 410 JBrowse link 20 11,417,428 11,424,301 RGD:1624291
G Fam161a FAM161 centrosomal protein A JBrowse link 14 107,785,029 107,803,765 RGD:1624291
G Ift52 intraflagellar transport 52 JBrowse link 3 159,388,868 159,413,358 RGD:1624291
G Pex6 peroxisomal biogenesis factor 6 JBrowse link 9 16,568,743 16,580,900 RGD:1624291
RGD:1600115
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 JBrowse link 13 94,888,046 95,100,833 RGD:1624291
cone photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rd3 retinal degeneration 3, GUCY2D regulator JBrowse link 13 110,739,645 110,749,167 RGD:1600115
RGD:1624291
G Tmem237 transmembrane protein 237 JBrowse link 9 65,882,063 65,917,424 RGD:1600115
RGD:1624291
photoreceptor connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrv1 adhesion G protein-coupled receptor V1 JBrowse link 2 8,926,843 9,504,455 RGD:1624291
G Arl3 ADP ribosylation factor like GTPase 3 JBrowse link 1 266,287,015 266,333,099 RGD:1600115
RGD:1624291
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Cetn1 centrin 1 JBrowse link 18 785,972 786,674 RGD:1624291
G Cetn2 centrin 2 JBrowse link X 152,927,852 152,933,095 RGD:1624291
G Cetn3 centrin 3 JBrowse link 2 12,101,473 12,115,009 RGD:1624291
G Cfap410 cilia and flagella associated protein 410 JBrowse link 20 11,417,428 11,424,301 RGD:1624291
G Fam161a FAM161 centrosomal protein A JBrowse link 14 107,785,029 107,803,765 RGD:8553427
RGD:13792537
RGD:1624291
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1624291
G Ift122 intraflagellar transport 122 JBrowse link 4 147,756,574 147,826,983 RGD:1624291
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Ift52 intraflagellar transport 52 JBrowse link 3 159,388,868 159,413,358 RGD:1624291
G Ift57 intraflagellar transport 57 JBrowse link 11 53,664,638 53,731,779 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Iqcb1 IQ motif containing B1 JBrowse link 11 66,824,059 66,878,585 RGD:1624291
G Kif17 kinesin family member 17 JBrowse link 5 156,628,409 156,665,752 RGD:1624291
G Kif3a kinesin family member 3a JBrowse link 10 38,918,705 38,953,958 RGD:1624291
G Kifap3 kinesin-associated protein 3 JBrowse link 13 82,072,497 82,217,256 RGD:1624291
G Lca5 lebercilin LCA5 JBrowse link 8 90,926,309 90,984,271 RGD:14397561
RGD:1624291
G Mak male germ cell-associated kinase JBrowse link 17 21,531,651 21,567,742 RGD:1624291
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:1624291
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
G Pcdhb22 protocadherin beta 22 JBrowse link 18 30,590,864 30,595,456 RGD:1624291
G Pdzd7 PDZ domain containing 7 JBrowse link 1 264,776,393 264,796,206 RGD:13792537
G RGD1306271 similar to KIAA1549 protein JBrowse link 4 65,834,933 65,962,722 RGD:1600115
RGD:1624291
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
G Rp1l1 RP1 like 1 JBrowse link 15 47,344,380 47,384,461 RGD:1624291
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:1624291
G Rpgrip1l Rpgrip1-like JBrowse link 19 17,115,266 17,208,055 RGD:11537356
G Septin2 septin 2 JBrowse link 9 100,624,876 100,658,053 RGD:1624291
G Spata7 spermatogenesis associated 7 JBrowse link 6 122,603,248 122,648,718 RGD:1624291
RGD:1600115
G Sptbn5 spectrin, beta, non-erythrocytic 5 JBrowse link 3 111,833,411 111,875,551 RGD:1624291
G Tbcc tubulin folding cofactor C JBrowse link 9 16,405,187 16,406,338 RGD:1624291
G Tmem237 transmembrane protein 237 JBrowse link 9 65,882,063 65,917,424 RGD:1600115
RGD:1624291
G Topors TOP1 binding arginine/serine rich protein JBrowse link 5 56,554,956 56,566,503 RGD:1624291
RGD:13792537
G Tsga10ip testis specific 10 interacting protein JBrowse link 1 220,772,592 220,786,952 RGD:13792537
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link 6 122,920,308 122,974,525 RGD:1624291
G Ush1c USH1 protein network component harmonin JBrowse link 1 102,207,096 102,256,779 RGD:13792537
G Ush1g USH1 protein network component sans JBrowse link 10 103,866,566 103,873,416 RGD:1624291
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:1600128
RGD:1624291
G Wdr19 WD repeat domain 19 JBrowse link 14 44,705,012 44,767,120 RGD:1624291
G Whrn whirlin JBrowse link 5 79,235,541 79,317,206 RGD:1600128
RGD:13792537
RGD:1624291
RGD:1600115
photoreceptor disc membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:1600115
RGD:1624291
G Sptbn5 spectrin, beta, non-erythrocytic 5 JBrowse link 3 111,833,411 111,875,551 RGD:1624291
photoreceptor distal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:1624291
G Spata7 spermatogenesis associated 7 JBrowse link 6 122,603,248 122,648,718 RGD:1600115
RGD:1624291
photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca4 ATP binding cassette subfamily A member 4 JBrowse link 2 225,645,539 225,783,288 RGD:1624291
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Arr3 arrestin 3 JBrowse link X 70,438,590 70,452,140 RGD:1600115
RGD:1624291
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link 2 123,283,402 123,322,991 RGD:1624291
G Cacna1f calcium voltage-gated channel subunit alpha1 F JBrowse link X 15,712,709 15,741,135 RGD:632484
G Cep250 centrosomal protein 250 JBrowse link 3 151,508,366 151,544,631 RGD:1624291
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Cerkl ceramide kinase-like JBrowse link 3 66,268,835 66,395,615 RGD:1624291
G Cfap410 cilia and flagella associated protein 410 JBrowse link 20 11,417,428 11,424,301 RGD:1624291
G Cib2 calcium and integrin binding family member 2 JBrowse link 8 59,123,078 59,139,946 RGD:1624291
RGD:1600115
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 JBrowse link 14 38,155,771 38,171,107 RGD:1624291
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 JBrowse link 9 43,807,412 43,858,225 RGD:1624291
G Cngb1 cyclic nucleotide gated channel subunit beta 1 JBrowse link 19 10,142,440 10,206,618 RGD:1624291
G Cngb3 cyclic nucleotide gated channel subunit beta 3 JBrowse link 5 33,097,353 33,507,467 RGD:1624291
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1599009
RGD:1624291
RGD:6893629
G Gnat2 G protein subunit alpha transducin 2 JBrowse link 2 210,880,754 210,890,765 RGD:2302146
RGD:13792537
RGD:1624291
G Gnb1 G protein subunit beta 1 JBrowse link 5 172,914,025 172,981,403 RGD:1624291
G Gnb5 G protein subunit beta 5 JBrowse link 8 82,248,951 82,286,493 RGD:1624291
G Gngt1 G protein subunit gamma transducin 1 JBrowse link 4 28,972,339 28,975,419 RGD:1599009
RGD:6893629
G Grk1 G protein-coupled receptor kinase 1 JBrowse link 16 81,153,489 81,165,442 RGD:1624291
G Guca1a guanylate cyclase activator 1A JBrowse link 9 15,609,804 15,620,030 RGD:1599354
RGD:1624291
G Guca1b guanylate cyclase activator 1B JBrowse link 9 15,621,083 15,629,017 RGD:1599354
G Guca2b guanylate cyclase activator 2B JBrowse link 5 138,695,591 138,697,641 RGD:1624291
G Gucy2d guanylate cyclase 2D, retinal JBrowse link 10 55,835,695 55,851,235 RGD:1624291
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:1624291
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Impg1 interphotoreceptor matrix proteoglycan 1 JBrowse link 8 87,733,374 87,879,958 RGD:1600115
G Inha inhibin subunit alpha JBrowse link 9 82,700,482 82,703,383 RGD:2290440
G Iqcb1 IQ motif containing B1 JBrowse link 11 66,824,059 66,878,585 RGD:1624291
G Lyar Ly1 antibody reactive JBrowse link 14 77,308,211 77,321,931 RGD:1624291
RGD:1600115
G Mak male germ cell-associated kinase JBrowse link 17 21,531,651 21,567,742 RGD:1624291
RGD:1600115
G Map1a microtubule-associated protein 1A JBrowse link 3 113,251,918 113,272,193 RGD:1624291
G Map1b microtubule-associated protein 1B JBrowse link 2 29,675,391 29,768,750 RGD:1624291
G Mertk MER proto-oncogene, tyrosine kinase JBrowse link 3 121,235,230 121,340,932 RGD:1299193
G Myo3b myosin IIIB JBrowse link 3 56,355,433 56,717,740 RGD:1624291
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
RGD:1600115
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:8553559
RGD:1600115
RGD:1624291
G Myrip myosin VIIA and Rab interacting protein JBrowse link 8 128,972,307 129,139,257 RGD:1600115
RGD:1624291
G Nupl2 nucleoporin like 2 JBrowse link 4 7,512,326 7,529,106 RGD:1624291
G Ocrl OCRL, inositol polyphosphate-5-phosphatase JBrowse link X 134,742,226 134,793,411 RGD:1624291
G Opn1mw opsin 1, medium wave sensitive JBrowse link X 156,569,683 156,589,907 RGD:6893562
RGD:13792537
RGD:1624291
G Opn1sw opsin 1, short wave sensitive JBrowse link 4 56,653,840 56,656,980 RGD:6893562
RGD:13792537
RGD:1624291
RGD:1600115
G Opn3 opsin 3 JBrowse link 13 93,716,481 93,746,994 RGD:13792537
G Opn5 opsin 5 JBrowse link 9 21,045,457 21,092,517 RGD:13792537
G Pcare photoreceptor cilium actin regulator JBrowse link 6 23,337,507 23,346,232 RGD:1624291
RGD:13792537
G Pcdh15 protocadherin related 15 JBrowse link 20 14,952,213 15,334,745 RGD:1624291
G Pdc phosducin JBrowse link 13 67,545,430 67,558,600 RGD:1624291
G Pde6b phosphodiesterase 6B JBrowse link 14 2,328,690 2,371,913 RGD:1624291
G Pex6 peroxisomal biogenesis factor 6 JBrowse link 9 16,568,743 16,580,900 RGD:1600115
G Prcd photoreceptor disc component JBrowse link 10 105,630,686 105,642,427 RGD:1624291
G Prkca protein kinase C, alpha JBrowse link 10 96,186,509 96,585,168 RGD:1624291
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
G Prph peripherin JBrowse link 7 140,742,406 140,746,197 RGD:1624291
G Prph2 peripherin 2 JBrowse link 9 16,085,933 16,386,176 RGD:1624291
G Ptgs1 prostaglandin-endoperoxide synthase 1 JBrowse link 3 15,560,685 15,582,339 RGD:1624291
RGD:1600115
G Ptprk protein tyrosine phosphatase, receptor type, K JBrowse link 1 17,445,052 18,058,266 RGD:1624291
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1624291
G Rapgef4 Rap guanine nucleotide exchange factor 4 JBrowse link 3 58,632,338 58,925,127 RGD:2314691
G Rd3 retinal degeneration 3, GUCY2D regulator JBrowse link 13 110,739,645 110,749,167 RGD:1624291
G Rgr retinal G protein coupled receptor JBrowse link 16 14,286,323 14,300,972 RGD:13792537
G Rgs9 regulator of G-protein signaling 9 JBrowse link 10 97,509,971 97,582,188 RGD:1624291
G Rgs9bp regulator of G protein signaling 9 binding protein JBrowse link 1 91,855,270 91,855,983 RGD:1624291
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:6893595
RGD:13792537
RGD:1624291
G Rom1 retinal outer segment membrane protein 1 JBrowse link 1 225,126,732 225,128,740 RGD:1624291
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
G Rp1l1 RP1 like 1 JBrowse link 15 47,344,380 47,384,461 RGD:1624291
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Rrh retinal pigment epithelium derived rhodopsin homolog JBrowse link 2 235,237,422 235,250,474 RGD:13792537
G Sag S-antigen visual arrestin JBrowse link 9 94,926,901 94,972,162 RGD:6893629
RGD:13792537
RGD:1624291
RGD:1600115
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 1 217,149,156 217,593,950 RGD:1624291
RGD:1600115
G Tulp1 TUB like protein 1 JBrowse link 20 7,931,673 7,943,601 RGD:1624291
G Ush1c USH1 protein network component harmonin JBrowse link 1 102,207,096 102,256,779 RGD:1303964
RGD:1624291
G Vcan versican JBrowse link 2 18,490,102 18,587,340 RGD:1600115
photoreceptor outer segment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdhr1 cadherin-related family member 1 JBrowse link 16 14,328,161 14,348,049 RGD:1624291
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 JBrowse link 14 38,155,771 38,171,107 RGD:1624291
RGD:1600115
G Gnb1 G protein subunit beta 1 JBrowse link 5 172,914,025 172,981,403 RGD:1599009
G Gucy2d guanylate cyclase 2D, retinal JBrowse link 10 55,835,695 55,851,235 RGD:1599625
RGD:1600115
RGD:1624291
G Pde6g phosphodiesterase 6G JBrowse link 10 109,620,499 109,625,214 RGD:13792537
G Pde6h phosphodiesterase 6H JBrowse link 4 170,947,723 170,963,046 RGD:13792537
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 JBrowse link 19 41,731,845 41,798,451 RGD:5131540
G Prcd photoreceptor disc component JBrowse link 10 105,630,686 105,642,427 RGD:1624291
RGD:1600115
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
G Prph peripherin JBrowse link 7 140,742,406 140,746,197 RGD:1624291
G Rdh11 retinol dehydrogenase 11 JBrowse link 6 102,356,498 102,372,618 RGD:1624291
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:6893561
RGD:1600115
RGD:1624291
G Rom1 retinal outer segment membrane protein 1 JBrowse link 1 225,126,732 225,128,740 RGD:1624291
photoreceptor proximal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
rod photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 JBrowse link 13 90,605,792 90,642,032 RGD:1624291
RGD:1600115
G Cep290 centrosomal protein 290 JBrowse link 7 40,217,269 40,306,327 RGD:1624291
G Gucy2f guanylate cyclase 2F JBrowse link X 113,372,240 113,474,210 RGD:1600115
RGD:1624291
G Rd3 retinal degeneration 3, GUCY2D regulator JBrowse link 13 110,739,645 110,749,167 RGD:1600115
RGD:1624291
G Spata7 spermatogenesis associated 7 JBrowse link 6 122,603,248 122,648,718 RGD:1600115
RGD:1624291
G Tmem237 transmembrane protein 237 JBrowse link 9 65,882,063 65,917,424 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      cell projection 2468
        plasma membrane bounded cell projection 2408
          neuron projection 1632
            photoreceptor cell cilium 116
              photoreceptor connecting cilium + 47
              photoreceptor outer segment + 85
Path 2
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      cell projection 2468
        plasma membrane bounded cell projection 2408
          cilium 645
            non-motile cilium 169
              9+0 non-motile cilium 136
                photoreceptor cell cilium 116
                  photoreceptor connecting cilium + 47
                  photoreceptor outer segment + 85
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.