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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell cilium
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Accession:GO:0097733 term browser browse the term
Definition:A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.
Synonyms:exact_synonym: photoreceptor cilium


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photoreceptor cell cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100968910 sodium/potassium-transporting ATPase subunit alpha-4 JBrowse link 1 139,426,556 139,462,393 RGD:9068941
G PEX6 peroxisomal biogenesis factor 6 JBrowse link 6 43,849,802 43,865,618 RGD:9068941
G SDCCAG8 SHH signaling and ciliogenesis regulator SDCCAG8 JBrowse link 1 224,238,840 224,481,133 RGD:9068941
cone photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RD3 retinal degeneration 3, GUCY2D regulator JBrowse link 1 191,907,989 191,924,365 RGD:9068941
G TMEM237 transmembrane protein 237 JBrowse link 2B 207,028,061 207,051,388 RGD:9068941
photoreceptor connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARL3 ADP ribosylation factor like GTPase 3 JBrowse link 10 102,735,325 102,775,849 RGD:9068941
G BBS4 Bardet-Biedl syndrome 4 JBrowse link 15 70,362,007 70,416,964 RGD:9068941
G CEP290 centrosomal protein 290 JBrowse link 12 88,896,146 88,988,953 RGD:9068941
G CETN1 centrin 1 JBrowse link 18 17,385,106 17,386,772 RGD:9068941
G CETN2 centrin 2 JBrowse link X 152,320,893 152,324,362 RGD:9068941
G CETN3 centrin 3 JBrowse link 5 25,098,973 25,114,676 RGD:9068941
G CFAP410 cilia and flagella associated protein 410 JBrowse link 21 43,879,949 43,890,112 RGD:9068941
G FAM161A FAM161 centrosomal protein A JBrowse link 2A 63,041,759 63,070,172 RGD:9068941
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 3 51,354,472 51,360,568 RGD:9068941
G IFT122 intraflagellar transport 122 JBrowse link 3 133,851,433 133,930,117 RGD:9068941
G IFT140 intraflagellar transport 140 JBrowse link 16 1,566,309 1,662,833 RGD:9068941
G IFT20 intraflagellar transport 20 JBrowse link 17 28,941,303 28,948,129 RGD:9068941
G IFT52 intraflagellar transport 52 JBrowse link 20 41,023,517 41,080,500 RGD:9068941
G IFT57 intraflagellar transport 57 JBrowse link 3 112,220,461 112,282,317 RGD:9068941
G IQCB1 IQ motif containing B1 JBrowse link 3 125,779,453 125,844,242 RGD:9068941
G KIAA1549 KIAA1549 ortholog JBrowse link 7 143,282,718 143,427,400 RGD:9068941
G KIF17 kinesin family member 17 JBrowse link 1 20,656,440 20,711,288 RGD:9068941
G KIF3A kinesin family member 3A JBrowse link 5 134,268,505 134,315,431 RGD:9068941
G KIFAP3 kinesin associated protein 3 JBrowse link 1 149,127,544 149,280,831 RGD:9068941
G LCA5 lebercilin LCA5 JBrowse link 6 80,636,181 80,688,609 RGD:9068941
G MAK male germ cell associated kinase JBrowse link 6 10,882,745 10,956,579 RGD:9068941
G MYO7A myosin VIIA JBrowse link 11 75,834,409 75,908,297 RGD:9068941
G NPHP1 nephrocystin 1 JBrowse link 2A 111,625,267 111,706,205 RGD:9068941
G PCDHB13 protocadherin beta 13 JBrowse link 5 142,690,555 142,693,893 RGD:9068941
G PCDHB15 protocadherin beta 15 JBrowse link 5 142,721,180 142,724,785 RGD:9068941
G PDZD7 PDZ domain containing 7 JBrowse link 10 101,085,130 101,107,949 RGD:9068941
G RP1 RP1 axonemal microtubule associated JBrowse link 8 48,414,160 48,428,421 RGD:9068941
G RP1L1 RP1 like 1 RGD:9068941
G RPGRIP1 RPGR interacting protein 1 JBrowse link 14 20,162,470 20,247,149 RGD:9068941
G RPGRIP1L RPGRIP1 like JBrowse link 16 52,920,790 53,023,178 RGD:9068941
G SEPTIN2 septin 2 JBrowse link 2B 247,380,771 247,419,556 RGD:9068941
G SPATA7 spermatogenesis associated 7 JBrowse link 14 88,362,737 88,415,083 RGD:9068941
G SPTBN5 spectrin beta, non-erythrocytic 5 JBrowse link 15 38,985,247 39,005,473 RGD:9068941
G TBCC tubulin folding cofactor C JBrowse link 6 43,630,273 43,631,992 RGD:9068941
G TMEM237 transmembrane protein 237 JBrowse link 2B 207,028,061 207,051,388 RGD:9068941
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase JBrowse link 9 33,124,730 33,136,923 RGD:9068941
G TSGA10IP testis specific 10 interacting protein JBrowse link 11 64,633,679 64,654,491 RGD:9068941
G TTC8 tetratricopeptide repeat domain 8 JBrowse link 14 88,802,812 88,857,055 RGD:9068941
G USH1C USH1 protein network component harmonin JBrowse link 11 17,233,854 17,284,256 RGD:9068941
G USH1G USH1 protein network component sans JBrowse link 17 74,417,766 74,424,794 RGD:9068941
G USH2A usherin JBrowse link 1 196,048,086 196,850,216 RGD:9068941
G WDR19 WD repeat domain 19 JBrowse link 4 39,365,204 39,470,074 RGD:9068941
G WHRN whirlin JBrowse link 9 113,863,872 113,966,758 RGD:9068941
photoreceptor disc membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCA4 ATP binding cassette subfamily A member 4 JBrowse link 1 95,386,263 95,514,589 RGD:9068941
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 3 51,354,472 51,360,568 RGD:9068941
G GNB1 G protein subunit beta 1 JBrowse link 1 1,647,764 1,753,106 RGD:9068941
G GNGT1 G protein subunit gamma transducin 1 JBrowse link 7 99,446,623 99,451,188 RGD:9068941
G GRK1 G protein-coupled receptor kinase 1 JBrowse link 13 113,867,002 113,885,610 RGD:9068941
G GRK4 G protein-coupled receptor kinase 4 JBrowse link 4 3,007,989 3,083,215 RGD:9068941
G GRK7 G protein-coupled receptor kinase 7 JBrowse link 3 146,403,211 146,443,474 RGD:9068941
G GUCA1A guanylate cyclase activator 1A JBrowse link 6 43,045,278 43,069,312 RGD:9068941
G GUCA1B guanylate cyclase activator 1B JBrowse link 6 43,072,469 43,083,838 RGD:9068941
G GUCA1C guanylate cyclase activator 1C JBrowse link 3 112,964,416 113,016,818 RGD:9068941
G GUCY2D guanylate cyclase 2D, retinal JBrowse link 17 8,023,248 8,036,065 RGD:9068941
G GUCY2F guanylate cyclase 2F, retinal JBrowse link X 108,952,200 109,061,441 RGD:9068941
G OPN1SW opsin 1, short wave sensitive JBrowse link 7 133,246,131 133,251,464 RGD:9068941
G PCDHB13 protocadherin beta 13 JBrowse link 5 142,690,555 142,693,893 RGD:9068941
G PDE6A phosphodiesterase 6A JBrowse link 5 151,289,225 151,375,952 RGD:9068941
G PDE6B phosphodiesterase 6B JBrowse link 4 646,516 701,680 RGD:9068941
G PDE6G phosphodiesterase 6G JBrowse link 17 81,805,872 81,812,668 RGD:9068941
G RHO rhodopsin JBrowse link 3 133,938,419 133,944,928 RGD:9068941
G SPTBN5 spectrin beta, non-erythrocytic 5 JBrowse link 15 38,985,247 39,005,473 RGD:9068941
photoreceptor distal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP4 nephrocystin 4 JBrowse link 1 5,878,739 6,012,869 RGD:9068941
G RPGRIP1 RPGR interacting protein 1 JBrowse link 14 20,162,470 20,247,149 RGD:9068941
G SPATA7 spermatogenesis associated 7 JBrowse link 14 88,362,737 88,415,083 RGD:9068941
photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARR3 arrestin 3 JBrowse link X 69,596,163 69,609,624 RGD:9068941
G ATP8A2 ATPase phospholipid transporting 8A2 JBrowse link 13 25,111,454 25,668,526 RGD:9068941
G BBS4 Bardet-Biedl syndrome 4 JBrowse link 15 70,362,007 70,416,964 RGD:9068941
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 4 125,161,804 125,208,350 RGD:9068941
G CACNA1F calcium voltage-gated channel subunit alpha1 F JBrowse link X 49,356,994 49,385,678 RGD:9068941
G CCDC66 coiled-coil domain containing 66 JBrowse link 3 57,720,490 57,773,326 RGD:9068941
G CEP250 centrosomal protein 250 JBrowse link 20 32,903,441 32,959,715 RGD:9068941
G CERKL ceramide kinase like JBrowse link 2B 186,611,147 186,731,484 RGD:9068941
G CFAP410 cilia and flagella associated protein 410 JBrowse link 21 43,879,949 43,890,112 RGD:9068941
G CIB2 calcium and integrin binding family member 2 JBrowse link 15 75,998,797 76,025,485 RGD:9068941
G CNGB1 cyclic nucleotide gated channel subunit beta 1 JBrowse link 16 57,290,276 57,379,282 RGD:9068941
G CNGB3 cyclic nucleotide gated channel subunit beta 3 JBrowse link 8 85,238,043 85,407,023 RGD:9068941
G EYS eyes shut homolog JBrowse link 6 66,676,633 67,251,757 RGD:9068941
G GNA11 G protein subunit alpha 11 JBrowse link 19 3,074,484 3,102,124 RGD:9068941
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 3 51,354,472 51,360,568 RGD:9068941
G GNAT2 G protein subunit alpha transducin 2 JBrowse link 1 111,208,510 111,225,808 RGD:9068941
G GUCA1A guanylate cyclase activator 1A JBrowse link 6 43,045,278 43,069,312 RGD:9068941
G GUCA2B guanylate cyclase activator 2B JBrowse link 1 42,832,809 42,835,202 RGD:9068941
G GUCY2D guanylate cyclase 2D, retinal JBrowse link 17 8,023,248 8,036,065 RGD:9068941
G HNF1A HNF1 homeobox A JBrowse link 12 121,932,671 121,955,911 RGD:9068941
G IFT140 intraflagellar transport 140 JBrowse link 16 1,566,309 1,662,833 RGD:9068941
G IFT20 intraflagellar transport 20 JBrowse link 17 28,941,303 28,948,129 RGD:9068941
G IMPG1 interphotoreceptor matrix proteoglycan 1 JBrowse link 6 77,054,893 77,180,578 RGD:9068941
G INHA inhibin subunit alpha JBrowse link 2B 225,419,747 225,423,386 RGD:9068941
G IQCB1 IQ motif containing B1 JBrowse link 3 125,779,453 125,844,242 RGD:9068941
G LOC100986730 guanine nucleotide-binding protein G(q) subunit alpha JBrowse link 9 76,570,773 76,773,847 RGD:9068941
G LYAR Ly1 antibody reactive JBrowse link 4 4,348,263 4,370,716 RGD:9068941
G MAK male germ cell associated kinase JBrowse link 6 10,882,745 10,956,579 RGD:9068941
G MAP1B microtubule associated protein 1B JBrowse link 5 43,701,530 43,803,393 RGD:9068941
G MERTK MER proto-oncogene, tyrosine kinase JBrowse link 2A 113,055,554 113,162,556 RGD:9068941
G MYO5A myosin VA JBrowse link 15 49,572,084 49,699,507 RGD:9068941
G MYO7A myosin VIIA JBrowse link 11 75,834,409 75,908,297 RGD:9068941
G NXNL1 nucleoredoxin like 1 JBrowse link 19 17,916,159 17,922,126 RGD:9068941
G OCRL OCRL inositol polyphosphate-5-phosphatase JBrowse link X 128,968,751 129,020,444 RGD:9068941
G OPN1SW opsin 1, short wave sensitive JBrowse link 7 133,246,131 133,251,464 RGD:9068941
G OPN3 opsin 3 JBrowse link 1 222,136,416 222,218,839 RGD:9068941
G OPN5 opsin 5 JBrowse link 6 48,628,456 48,672,673 RGD:9068941
G PCARE photoreceptor cilium actin regulator JBrowse link 2A 29,147,730 29,160,296 RGD:9068941
G PCDH15 protocadherin related 15 JBrowse link 10 52,661,035 54,456,043 RGD:9068941
G PDC phosducin JBrowse link 1 166,122,181 166,145,947 RGD:9068941
G PEX6 peroxisomal biogenesis factor 6 JBrowse link 6 43,849,802 43,865,618 RGD:9068941
G PPEF2 protein phosphatase with EF-hand domain 2 JBrowse link 4 54,141,778 54,184,351 RGD:9068941
G PROM1 prominin 1 JBrowse link 4 15,702,155 15,816,070 RGD:9068941
G PRPH2 peripherin 2 JBrowse link 6 43,582,317 43,608,011 RGD:9068941
G PTGS1 prostaglandin-endoperoxide synthase 1 JBrowse link 9 121,837,095 121,859,283 RGD:9068941
G PTPRK protein tyrosine phosphatase receptor type K JBrowse link 6 129,864,573 130,421,909 RGD:9068941
G RAB27A RAB27A, member RAS oncogene family JBrowse link 15 52,498,202 52,584,731 RGD:9068941
G RCVRN recoverin JBrowse link 17 46,490,605 46,502,962 RGD:9068941
G RD3 retinal degeneration 3, GUCY2D regulator JBrowse link 1 191,907,989 191,924,365 RGD:9068941
G RGR retinal G protein coupled receptor JBrowse link 10 84,230,526 84,244,220 RGD:9068941
G RGS9BP regulator of G protein signaling 9 binding protein JBrowse link 19 38,342,812 38,345,706 RGD:9068941
G RHO rhodopsin JBrowse link 3 133,938,419 133,944,928 RGD:9068941
G RP1 RP1 axonemal microtubule associated JBrowse link 8 48,414,160 48,428,421 RGD:9068941
G RP1L1 RP1 like 1 RGD:9068941
G RPGR retinitis pigmentosa GTPase regulator JBrowse link X 38,426,895 38,485,140 RGD:9068941
G RRH retinal pigment epithelium-derived rhodopsin homolog JBrowse link 4 112,891,370 112,909,406 RGD:9068941
G SAG S-antigen visual arrestin JBrowse link 2B 239,449,910 239,487,626 RGD:9068941
G SHANK2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 11 68,857,186 69,495,237 RGD:9068941
G TULP1 TUB like protein 1 JBrowse link 6 36,151,294 36,166,210 RGD:9068941
G USH1C USH1 protein network component harmonin JBrowse link 11 17,233,854 17,284,256 RGD:9068941
G VCAN versican JBrowse link 5 32,019,709 32,130,350 RGD:9068941
G WDR19 WD repeat domain 19 JBrowse link 4 39,365,204 39,470,074 RGD:9068941
photoreceptor outer segment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDHR1 cadherin related family member 1 JBrowse link 10 84,180,049 84,204,163 RGD:9068941
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 JBrowse link 4 84,865,999 84,945,692 RGD:9068941
G DHRS3 dehydrogenase/reductase 3 JBrowse link 1 12,533,696 12,584,381 RGD:9068941
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 3 51,354,472 51,360,568 RGD:9068941
G GNAT2 G protein subunit alpha transducin 2 JBrowse link 1 111,208,510 111,225,808 RGD:9068941
G GNB1 G protein subunit beta 1 JBrowse link 1 1,647,764 1,753,106 RGD:9068941
G GUCY2D guanylate cyclase 2D, retinal JBrowse link 17 8,023,248 8,036,065 RGD:9068941
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D JBrowse link 7 107,923,952 107,973,269 RGD:9068941
G PDE6G phosphodiesterase 6G JBrowse link 17 81,805,872 81,812,668 RGD:9068941
G PDE6H phosphodiesterase 6H JBrowse link 12 15,372,413 15,381,249 RGD:9068941
G PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 JBrowse link 16 71,481,605 71,562,793 RGD:9068941
G PRCD photoreceptor disc component JBrowse link 17 76,179,664 76,193,493 RGD:9068941
G PROM1 prominin 1 JBrowse link 4 15,702,155 15,816,070 RGD:9068941
G RHO rhodopsin JBrowse link 3 133,938,419 133,944,928 RGD:9068941
G ROM1 retinal outer segment membrane protein 1 JBrowse link 11 61,324,900 61,327,278 RGD:9068941
rod photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GUCY2F guanylate cyclase 2F, retinal JBrowse link X 108,952,200 109,061,441 RGD:9068941
G LOC100968910 sodium/potassium-transporting ATPase subunit alpha-4 JBrowse link 1 139,426,556 139,462,393 RGD:9068941
G RD3 retinal degeneration 3, GUCY2D regulator JBrowse link 1 191,907,989 191,924,365 RGD:9068941
G SPATA7 spermatogenesis associated 7 JBrowse link 14 88,362,737 88,415,083 RGD:9068941
G TMEM237 transmembrane protein 237 JBrowse link 2B 207,028,061 207,051,388 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16552
    cellular anatomical entity 16421
      cell projection 2247
        plasma membrane bounded cell projection 2163
          neuron projection 1348
            photoreceptor cell cilium 116
              photoreceptor connecting cilium + 44
              photoreceptor outer segment + 87
Path 2
Term Annotations click to browse term
  cellular_component 16552
    cellular anatomical entity 16421
      cell projection 2247
        plasma membrane bounded cell projection 2163
          cilium 638
            non-motile cilium 160
              9+0 non-motile cilium 134
                photoreceptor cell cilium 116
                  photoreceptor connecting cilium + 44
                  photoreceptor outer segment + 87
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.