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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell cilium
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Accession:GO:0097733 term browser browse the term
Definition:A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.
Synonyms:exact_synonym: photoreceptor cilium


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photoreceptor cell cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PEX6 peroxisomal biogenesis factor 6 JBrowse link 12 11,503,184 11,514,977 RGD:13508589
cone photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TMEM237 transmembrane protein 237 JBrowse link 37 10,691,010 10,709,632 RGD:13508589
photoreceptor connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CETN1 centrin 1 JBrowse link 7 67,431,020 67,431,774 RGD:13508589
G FAM161A FAM161 centrosomal protein A JBrowse link 10 61,774,879 61,839,853 RGD:13508589
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 20 39,128,244 39,133,280 RGD:13508589
G IFT122 intraflagellar transport 122 JBrowse link 20 5,644,002 5,716,702 RGD:13508589
G IFT20 intraflagellar transport 20 JBrowse link 9 42,581,117 42,587,830 RGD:13508589
G IFT52 intraflagellar transport 52 JBrowse link 24 31,295,987 31,334,825 RGD:13508589
G IFT57 intraflagellar transport 57 JBrowse link 33 13,432,902 13,486,692 RGD:13508589
G IQCB1 IQ motif containing B1 JBrowse link 33 25,046,975 25,113,252 RGD:13508589
G KIF3A kinesin family member 3A JBrowse link 11 20,988,516 21,044,151 RGD:13508589
G KIFAP3 kinesin associated protein 3 JBrowse link 7 28,581,855 28,739,327 RGD:13508589
G MYO7A myosin VIIA JBrowse link 21 21,539,735 21,624,063 RGD:13508589
G PDZD7 PDZ domain containing 7 JBrowse link 28 13,693,032 13,711,654 RGD:13508589
G RP1 RP1 axonemal microtubule associated JBrowse link 29 6,079,519 6,136,009 RGD:13508589
G RPGRIP1 RPGR interacting protein 1 JBrowse link 15 18,316,887 18,388,724 RGD:13508589
G SPTBN5 spectrin beta, non-erythrocytic 5 JBrowse link 30 8,877,155 8,922,749 RGD:13508589
G TBCC tubulin folding cofactor C JBrowse link 12 11,332,736 11,334,799 RGD:13508589
G TMEM237 transmembrane protein 237 JBrowse link 37 10,691,010 10,709,632 RGD:13508589
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase JBrowse link 11 49,809,156 49,821,224 RGD:13508589
G TSGA10IP testis specific 10 interacting protein JBrowse link 18 51,315,150 51,323,769 RGD:13508589
G TTC8 tetratricopeptide repeat domain 8 JBrowse link 8 60,061,670 60,115,464 RGD:13508589
G USH1C USH1 protein network component harmonin JBrowse link 21 40,055,786 40,100,685 RGD:13508589
G USH2A usherin JBrowse link 38 11,063,221 11,750,444 RGD:13508589
G WHRN whirlin JBrowse link 11 68,617,383 68,699,824 RGD:13508589
photoreceptor disc membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RHO rhodopsin JBrowse link 20 5,630,735 5,638,906 RGD:13508589
G SPTBN5 spectrin beta, non-erythrocytic 5 JBrowse link 30 8,877,155 8,922,749 RGD:13508589
photoreceptor distal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP4 nephrocystin 4 JBrowse link 5 59,819,236 59,936,220 RGD:13508589
G RPGRIP1 RPGR interacting protein 1 JBrowse link 15 18,316,887 18,388,724 RGD:13508589
G SPATA7 spermatogenesis associated 7 JBrowse link 8 59,658,295 59,697,409 RGD:13508589
photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCA4 ATP binding cassette subfamily A member 4 JBrowse link 6 55,058,361 55,186,255 RGD:13508589
G ARR3 arrestin 3 JBrowse link X 54,725,034 54,730,920 RGD:13508589
G BBS7 Bardet-Biedl syndrome 7 JBrowse link 19 18,280,487 18,319,128 RGD:13508589
G CCDC66 coiled-coil domain containing 66 JBrowse link 20 33,714,224 33,758,846 RGD:13508589
G CIB2 calcium and integrin binding family member 2 RGD:13508589
G CNGB1 cyclic nucleotide gated channel subunit beta 1 JBrowse link 2 58,574,552 58,641,631 RGD:13508589
G CNGB3 cyclic nucleotide gated channel subunit beta 3 JBrowse link 29 32,744,946 32,992,715 RGD:13508589
G GNAQ G protein subunit alpha q JBrowse link 1 80,733,530 80,928,065 RGD:13508589
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 20 39,128,244 39,133,280 RGD:13508589
G GNAT2 G protein subunit alpha transducin 2 JBrowse link 6 42,259,404 42,271,197 RGD:13508589
G GNB1 G protein subunit beta 1 JBrowse link 5 56,777,854 56,879,619 RGD:13508589
G GUCA1A guanylate cyclase activator 1A JBrowse link 12 10,786,284 10,795,974 RGD:13508589
G GUCY2D guanylate cyclase 2D, retinal JBrowse link 5 32,844,033 32,859,263 RGD:13508589
G HNF1A HNF1 homeobox A JBrowse link 26 16,805,690 16,826,065 RGD:13508589
G IFT20 intraflagellar transport 20 JBrowse link 9 42,581,117 42,587,830 RGD:13508589
G IQCB1 IQ motif containing B1 JBrowse link 33 25,046,975 25,113,252 RGD:13508589
G MAP1B microtubule associated protein 1B JBrowse link 2 55,175,000 55,258,160 RGD:13508589
G MYO7A myosin VIIA JBrowse link 21 21,539,735 21,624,063 RGD:13508589
G OCRL OCRL inositol polyphosphate-5-phosphatase JBrowse link X 100,760,302 100,817,673 RGD:13508589
G OPN1LW opsin 1, medium wave sensitive JBrowse link X 121,974,552 121,987,418 RGD:13508589
G OPN1SW opsin 1, short wave sensitive JBrowse link 14 7,865,370 7,869,516 RGD:13508589
G OPN3 opsin 3 JBrowse link 7 32,995,047 33,040,873 RGD:13508589
G OPN5 opsin 5 JBrowse link 12 15,831,311 15,858,121 RGD:13508589
G PCARE photoreceptor cilium actin regulator JBrowse link 17 22,898,998 22,910,639 RGD:13508589
G PDC phosducin JBrowse link 7 19,498,785 19,514,225 RGD:13508589
G PDE6B phosphodiesterase 6B JBrowse link 3 91,746,571 91,775,372 RGD:13508589
G PRPH2 peripherin 2 JBrowse link 12 11,299,236 11,316,175 RGD:13508589
G RAB27A RAB27A, member RAS oncogene family JBrowse link 30 20,633,576 20,706,240 RGD:13508589
G RCVRN recoverin JBrowse link 5 34,323,580 34,330,667 RGD:13508589
G RGR retinal G protein coupled receptor JBrowse link 4 32,489,964 32,499,393 RGD:13508589
G RGS9BP regulator of G protein signaling 9 binding protein JBrowse link 1 119,316,799 119,322,856 RGD:13508589
G RHO rhodopsin JBrowse link 20 5,630,735 5,638,906 RGD:13508589
G RP1 RP1 axonemal microtubule associated JBrowse link 29 6,079,519 6,136,009 RGD:13508589
G RRH retinal pigment epithelium-derived rhodopsin homolog JBrowse link 32 30,005,920 30,027,012 RGD:13508589
G SAG S-antigen visual arrestin JBrowse link 25 44,800,141 44,843,580 RGD:13508589
G SHANK2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 18 47,477,625 47,915,557 RGD:13508589
photoreceptor outer segment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDHR1 cadherin related family member 1 JBrowse link 4 32,435,364 32,459,181 RGD:13508589
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 JBrowse link 13 43,831,159 43,864,276 RGD:13508589
G GUCY2D guanylate cyclase 2D, retinal JBrowse link 5 32,844,033 32,859,263 RGD:13508589
G PDE6G phosphodiesterase 6G JBrowse link 9 525,123 529,406 RGD:13508589
G PDE6H phosphodiesterase 6H JBrowse link 27 31,640,731 31,664,494 RGD:13508589
G PRCD photoreceptor disc component JBrowse link 9 4,179,757 4,190,658 RGD:13508589
G RHO rhodopsin JBrowse link 20 5,630,735 5,638,906 RGD:13508589
G ROM1 retinal outer segment membrane protein 1 JBrowse link 18 54,025,603 54,027,803 RGD:13508589
rod photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GUCY2F guanylate cyclase 2F, retinal JBrowse link X 82,648,673 82,751,394 RGD:13508589
G SPATA7 spermatogenesis associated 7 JBrowse link 8 59,658,295 59,697,409 RGD:13508589
G TMEM237 transmembrane protein 237 JBrowse link 37 10,691,010 10,709,632 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 14739
    cellular anatomical entity 14599
      cell projection 1252
        plasma membrane bounded cell projection 1231
          neuron projection 707
            photoreceptor cell cilium 64
              photoreceptor connecting cilium + 25
              photoreceptor outer segment + 46
Path 2
Term Annotations click to browse term
  cellular_component 14739
    cellular anatomical entity 14599
      cell projection 1252
        plasma membrane bounded cell projection 1231
          cilium 411
            non-motile cilium 95
              9+0 non-motile cilium 76
                photoreceptor cell cilium 64
                  photoreceptor connecting cilium + 25
                  photoreceptor outer segment + 46
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.