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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell cilium
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Accession:GO:0097733 term browser browse the term
Definition:A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.
Synonyms:exact_synonym: photoreceptor cilium


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photoreceptor cell cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp1a4 ATPase, Na+/K+ transporting, alpha 4 polypeptide JBrowse link 1 172,223,508 172,258,424 RGD:2290270
G Cfap410 cilia and flagella associated protein 410 JBrowse link 10 77,978,530 77,985,438 RGD:2290270
G Fam161a family with sequence similarity 161, member A JBrowse link 11 23,006,721 23,045,743 RGD:2290270
G Ift52 intraflagellar transport 52 JBrowse link 2 163,017,117 163,046,155 RGD:2290270
G Pex6 peroxisomal biogenesis factor 6 JBrowse link 17 46,711,476 46,725,543 RGD:2290270
G Rp1 retinitis pigmentosa 1 (human) JBrowse link 1 4,115,673 4,409,266 RGD:2290270
G Sdccag8 serologically defined colon cancer antigen 8 JBrowse link 1 176,814,660 177,020,438 RGD:2290270
cone photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rd3 retinal degeneration 3 JBrowse link 1 191,956,490 191,988,282 RGD:2290270
G Tmem237 transmembrane protein 237 JBrowse link 1 59,100,584 59,120,422 RGD:2290270
photoreceptor connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrv1 adhesion G protein-coupled receptor V1 JBrowse link 13 81,095,068 81,633,391 RGD:2290270
G Arl3 ADP-ribosylation factor-like 3 JBrowse link 19 46,531,109 46,573,182 RGD:2290270
G Bbs4 Bardet-Biedl syndrome 4 (human) JBrowse link 9 59,321,966 59,353,508 RGD:2290270
G Cep290 centrosomal protein 290 JBrowse link 10 100,487,548 100,575,671 RGD:2290270
G Cetn1 centrin 1 JBrowse link 18 9,618,419 9,619,469 RGD:2290270
G Cetn2 centrin 2 JBrowse link X 72,913,565 72,918,344 RGD:2290270
G Cetn3 centrin 3 JBrowse link 13 81,780,636 81,797,155 RGD:2290270
G Cfap410 cilia and flagella associated protein 410 JBrowse link 10 77,978,530 77,985,438 RGD:2290270
G D630045J12Rik RIKEN cDNA D630045J12 gene JBrowse link 6 38,123,174 38,254,139 RGD:2290270
G Fam161a family with sequence similarity 161, member A JBrowse link 11 23,006,721 23,045,743 RGD:2290270
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 JBrowse link 9 107,674,437 107,679,634 RGD:2290270
G Ift122 intraflagellar transport 122 JBrowse link 6 115,853,379 115,926,699 RGD:2290270
G Ift140 intraflagellar transport 140 JBrowse link 17 25,016,083 25,099,499 RGD:2290270
G Ift20 intraflagellar transport 20 JBrowse link 11 78,536,361 78,541,732 RGD:2290270
G Ift52 intraflagellar transport 52 JBrowse link 2 163,017,117 163,046,155 RGD:2290270
G Ift57 intraflagellar transport 57 JBrowse link 16 49,699,294 49,765,126 RGD:2290270
G Ift88 intraflagellar transport 88 JBrowse link 14 57,424,064 57,517,936 RGD:2290270
G Iqcb1 IQ calmodulin-binding motif containing 1 JBrowse link 16 36,828,360 36,872,719 RGD:2290270
G Kif17 kinesin family member 17 JBrowse link 4 138,262,251 138,301,973 RGD:2290270
G Kif3a kinesin family member 3A JBrowse link 11 53,565,701 53,604,248 RGD:2290270
G Kifap3 kinesin-associated protein 3 JBrowse link 1 163,762,138 163,917,107 RGD:2290270
G Lca5 Leber congenital amaurosis 5 (human) JBrowse link 9 83,391,355 83,442,994 RGD:2290270
G Mak male germ cell-associated kinase JBrowse link 13 41,025,007 41,079,706 RGD:2290270
G Myo7a myosin VIIA JBrowse link 7 98,051,054 98,119,522 RGD:2290270
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) JBrowse link 2 127,740,732 127,788,913 RGD:2290270
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) JBrowse link 4 152,476,706 152,563,184 RGD:2290270
G Pcdhb16 protocadherin beta 16 JBrowse link 18 37,477,768 37,483,038 RGD:2290270
G Pcdhb22 protocadherin beta 22 JBrowse link 18 37,518,353 37,521,419 RGD:2290270
G Pdzd7 PDZ domain containing 7 JBrowse link 19 45,026,907 45,058,633 RGD:2290270
G Rp1 retinitis pigmentosa 1 (human) JBrowse link 1 4,115,673 4,409,266 RGD:2290270
G Rp1l1 retinitis pigmentosa 1 homolog like 1 JBrowse link 14 63,992,431 64,033,506 RGD:2290270
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 10,158,216 10,216,795 RGD:2290270
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 JBrowse link 14 52,104,241 52,161,339 RGD:2290270
G Rpgrip1l Rpgrip1-like JBrowse link 8 91,217,030 91,313,291 RGD:2290270
G Septin2 septin 2 JBrowse link 1 93,478,969 93,509,733 RGD:2290270
G Spata7 spermatogenesis associated 7 JBrowse link 12 98,628,129 98,669,819 RGD:2290270
G Sptbn5 spectrin beta, non-erythrocytic 5 JBrowse link 2 120,041,493 120,088,913 RGD:2290270
G Tbcc tubulin-specific chaperone C JBrowse link 17 46,890,621 46,892,463 RGD:2290270
G Tmem237 transmembrane protein 237 JBrowse link 1 59,100,584 59,120,422 RGD:2290270
G Topors topoisomerase I binding, arginine/serine-rich JBrowse link 4 40,259,606 40,269,841 RGD:2290270
G Tsga10ip testis specific 10 interacting protein JBrowse link 19 5,390,047 5,402,534 RGD:2290270
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link 12 98,920,537 98,983,250 RGD:2290270
G Ush1c USH1 protein network component harmonin JBrowse link 7 46,195,350 46,238,490 RGD:2290270
G Ush1g USH1 protein network component sans JBrowse link 11 115,315,192 115,333,736 RGD:2290270
G Ush2a usherin JBrowse link 1 188,262,838 188,965,497 RGD:2290270
G Wdr19 WD repeat domain 19 JBrowse link 5 65,199,696 65,260,415 RGD:2290270
G Whrn whirlin JBrowse link 4 63,414,908 63,496,083 RGD:2290270
photoreceptor disc membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcdhb16 protocadherin beta 16 JBrowse link 18 37,477,768 37,483,038 RGD:2290270
G Rho rhodopsin JBrowse link 6 115,926,754 115,940,038 RGD:2290270
G Sptbn5 spectrin beta, non-erythrocytic 5 JBrowse link 2 120,041,493 120,088,913 RGD:2290270
photoreceptor distal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 10 20,952,232 21,080,429 RGD:2290270
G Cep290 centrosomal protein 290 JBrowse link 10 100,487,548 100,575,671 RGD:2290270
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) JBrowse link 2 127,740,732 127,788,913 RGD:2290270
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) JBrowse link 4 152,476,706 152,563,184 RGD:2290270
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 10,158,216 10,216,795 RGD:2290270
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 JBrowse link 14 52,104,241 52,161,339 RGD:2290270
G Spata7 spermatogenesis associated 7 JBrowse link 12 98,628,129 98,669,819 RGD:2290270
photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca4 ATP-binding cassette, sub-family A (ABC1), member 4 JBrowse link 3 122,043,891 122,180,070 RGD:2290270
G Ahi1 Abelson helper integration site 1 JBrowse link 10 20,952,232 21,080,429 RGD:2290270
G Arr3 arrestin 3, retinal JBrowse link X 100,605,480 100,618,493 RGD:2290270
G Bbs4 Bardet-Biedl syndrome 4 (human) JBrowse link 9 59,321,966 59,353,508 RGD:2290270
G Bbs7 Bardet-Biedl syndrome 7 (human) JBrowse link 3 36,573,142 36,613,492 RGD:2290270
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit JBrowse link X 7,607,103 7,635,196 RGD:2290270
G Cep250 centrosomal protein 250 JBrowse link 2 155,956,285 155,998,900 RGD:2290270
G Cep290 centrosomal protein 290 JBrowse link 10 100,487,548 100,575,671 RGD:2290270
G Cerkl ceramide kinase-like JBrowse link 2 79,332,491 79,428,988 RGD:2290270
G Cfap410 cilia and flagella associated protein 410 JBrowse link 10 77,978,530 77,985,438 RGD:2290270
G Cib2 calcium and integrin binding family member 2 JBrowse link 9 54,544,794 54,560,190 RGD:2290270
G Cnga1 cyclic nucleotide gated channel alpha 1 JBrowse link 5 72,603,696 72,642,752 RGD:2290270
G Cnga3 cyclic nucleotide gated channel alpha 3 JBrowse link 1 37,218,241 37,263,384 RGD:2290270
G Cngb1 cyclic nucleotide gated channel beta 1 JBrowse link 8 95,239,043 95,306,585 RGD:2290270
G Cngb3 cyclic nucleotide gated channel beta 3 JBrowse link 4 19,280,850 19,510,623 RGD:2290270
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 JBrowse link 9 107,674,437 107,679,634 RGD:2290270
G Gnat2 guanine nucleotide binding protein, alpha transducing 2 JBrowse link 3 108,086,788 108,101,432 RGD:2290270
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 JBrowse link 4 155,491,300 155,559,269 RGD:2290270
G Gnb5 guanine nucleotide binding protein (G protein), beta 5 JBrowse link 9 75,306,288 75,345,923 RGD:2290270
G Gngt1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 JBrowse link 6 3,989,082 3,997,436 RGD:2290270
G Grk1 G protein-coupled receptor kinase 1 JBrowse link 8 13,405,081 13,421,951 RGD:2290270
G Guca1a guanylate cyclase activator 1a (retina) JBrowse link 17 47,394,557 47,413,514 RGD:2290270
G Guca1b guanylate cyclase activator 1B JBrowse link 17 47,384,694 47,392,967 RGD:2290270
G Guca2b guanylate cyclase activator 2b (retina) JBrowse link 4 119,656,601 119,658,945 RGD:2290270
G Gucy2e guanylate cyclase 2e JBrowse link 11 69,218,117 69,237,279 RGD:2290270
G Hnf1a HNF1 homeobox A JBrowse link 5 114,948,980 114,971,062 RGD:2290270
G Ift140 intraflagellar transport 140 JBrowse link 17 25,016,083 25,099,499 RGD:2290270
G Ift20 intraflagellar transport 20 JBrowse link 11 78,536,361 78,541,732 RGD:2290270
G Inha inhibin alpha JBrowse link 1 75,507,077 75,510,366 RGD:2290270
G Iqcb1 IQ calmodulin-binding motif containing 1 JBrowse link 16 36,828,360 36,872,719 RGD:2290270
G Lyar Ly1 antibody reactive clone JBrowse link 5 38,220,471 38,234,306 RGD:2290270
G Mak male germ cell-associated kinase JBrowse link 13 41,025,007 41,079,706 RGD:2290270
G Map1a microtubule-associated protein 1 A JBrowse link 2 121,289,590 121,310,832 RGD:2290270
G Map1b microtubule-associated protein 1B JBrowse link 13 99,421,464 99,516,602 RGD:2290270
G Mertk MER proto-oncogene tyrosine kinase JBrowse link 2 128,698,915 128,803,162 RGD:2290270
G Myo3b myosin IIIB JBrowse link 2 70,039,126 70,429,195 RGD:2290270
G Myo5a myosin VA JBrowse link 9 75,069,799 75,223,688 RGD:2290270
G Myo7a myosin VIIA JBrowse link 7 98,051,054 98,119,522 RGD:2290270
G Myrip myosin VIIA and Rab interacting protein JBrowse link 9 120,303,520 120,476,101 RGD:2290270
G Nupl2 nucleoporin like 2 JBrowse link 5 24,164,963 24,184,013 RGD:2290270
G Ocrl OCRL, inositol polyphosphate-5-phosphatase JBrowse link X 47,912,418 47,966,428 RGD:2290270
G Opn1lw opsin 1 (cone pigments), long-wave-sensitive RGD:2290270
G Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) JBrowse link X 74,127,466 74,150,756 RGD:2290270
G Opn1sw opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) JBrowse link 6 29,376,671 29,380,513 RGD:2290270
G Opn3 opsin 3 JBrowse link 1 175,662,421 175,692,901 RGD:2290270
G Opn5 opsin 5 JBrowse link 17 42,556,779 42,611,430 RGD:2290270
G Pcare photoreceptor cilium actin regulator JBrowse link 17 71,743,555 71,752,905 RGD:2290270
G Pcdh15 protocadherin 15 JBrowse link 10 73,096,277 74,649,831 RGD:2290270
G Pdc phosducin JBrowse link 1 150,319,417 150,333,906 RGD:2290270
G Pde6b phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide JBrowse link 5 108,388,373 108,431,743 RGD:2290270
G Plekhb1 pleckstrin homology domain containing, family B (evectins) member 1 JBrowse link 7 100,643,896 100,662,394 RGD:2290270
G Prcd photoreceptor disc component JBrowse link 11 116,653,889 116,668,389 RGD:2290270
G Prkca protein kinase C, alpha JBrowse link 11 107,933,387 108,343,888 RGD:2290270
G Prom1 prominin 1 JBrowse link 5 43,993,621 44,102,047 RGD:2290270
G Prph peripherin JBrowse link 15 99,053,579 99,058,978 RGD:2290270
G Prph2 peripherin 2 JBrowse link 17 46,910,478 46,924,933 RGD:2290270
G Ptgs1 prostaglandin-endoperoxide synthase 1 JBrowse link 2 36,216,742 36,258,593 RGD:2290270
G Ptprk protein tyrosine phosphatase, receptor type, K JBrowse link 10 28,074,820 28,597,397 RGD:2290270
G Rab27a RAB27A, member RAS oncogene family JBrowse link 9 73,044,810 73,097,623 RGD:2290270
G Rapgef4 Rap guanine nucleotide exchange factor (GEF) 4 JBrowse link 2 71,981,215 72,257,474 RGD:2290270
G Rd3 retinal degeneration 3 JBrowse link 1 191,956,490 191,988,282 RGD:2290270
G Rgr retinal G protein coupled receptor JBrowse link 14 37,034,909 37,049,014 RGD:2290270
G Rgs9 regulator of G-protein signaling 9 JBrowse link 11 109,225,348 109,298,181 RGD:2290270
G Rgs9bp regulator of G-protein signalling 9 binding protein JBrowse link 7 35,578,993 35,585,582 RGD:2290270
G Rho rhodopsin JBrowse link 6 115,926,754 115,940,038 RGD:2290270
G Rom1 rod outer segment membrane protein 1 JBrowse link 19 8,927,382 8,929,356 RGD:2290270
G Rp1 retinitis pigmentosa 1 (human) JBrowse link 1 4,115,673 4,409,266 RGD:2290270
G Rp1l1 retinitis pigmentosa 1 homolog like 1 JBrowse link 14 63,992,431 64,033,506 RGD:2290270
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 10,158,216 10,216,795 RGD:2290270
G Rrh retinal pigment epithelium derived rhodopsin homolog JBrowse link 3 129,808,575 129,822,505 RGD:2290270
G Sag S-antigen, retina and pineal gland (arrestin) JBrowse link 1 87,798,143 87,845,158 RGD:2290270
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 7 143,978,077 144,426,043 RGD:2290270
G Tulp1 tubby like protein 1 JBrowse link 17 28,351,515 28,365,216 RGD:2290270
G Ush1c USH1 protein network component harmonin JBrowse link 7 46,195,350 46,238,490 RGD:2290270
photoreceptor outer segment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdhr1 cadherin-related family member 1 JBrowse link 14 37,077,849 37,098,347 RGD:2290270
G Cnga1 cyclic nucleotide gated channel alpha 1 JBrowse link 5 72,603,696 72,642,752 RGD:2290270
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 JBrowse link 4 155,491,300 155,559,269 RGD:2290270
G Gucy2e guanylate cyclase 2e JBrowse link 11 69,218,117 69,237,279 RGD:2290270
G Pde6g phosphodiesterase 6G, cGMP-specific, rod, gamma JBrowse link 11 120,447,607 120,453,500 RGD:2290270
G Pde6h phosphodiesterase 6H, cGMP-specific, cone, gamma JBrowse link 6 136,952,218 136,963,485 RGD:2290270
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 JBrowse link 8 109,868,517 109,944,671 RGD:2290270
G Prcd photoreceptor disc component JBrowse link 11 116,653,889 116,668,389 RGD:2290270
G Prom1 prominin 1 JBrowse link 5 43,993,621 44,102,047 RGD:2290270
G Prph peripherin JBrowse link 15 99,053,579 99,058,978 RGD:2290270
G Rdh11 retinol dehydrogenase 11 JBrowse link 12 79,174,233 79,191,855 RGD:2290270
G Rho rhodopsin JBrowse link 6 115,926,754 115,940,038 RGD:2290270
G Rom1 rod outer segment membrane protein 1 JBrowse link 19 8,927,382 8,929,356 RGD:2290270
photoreceptor proximal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep290 centrosomal protein 290 JBrowse link 10 100,487,548 100,575,671 RGD:2290270
rod photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp1a4 ATPase, Na+/K+ transporting, alpha 4 polypeptide JBrowse link 1 172,223,508 172,258,424 RGD:2290270
G Cep290 centrosomal protein 290 JBrowse link 10 100,487,548 100,575,671 RGD:2290270
G Gucy2f guanylate cyclase 2f JBrowse link X 142,079,286 142,197,276 RGD:2290270
G Rd3 retinal degeneration 3 JBrowse link 1 191,956,490 191,988,282 RGD:2290270
G Spata7 spermatogenesis associated 7 JBrowse link 12 98,628,129 98,669,819 RGD:2290270
G Tmem237 transmembrane protein 237 JBrowse link 1 59,100,584 59,120,422 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23072
    cellular anatomical entity 18765
      cell projection 2526
        plasma membrane bounded cell projection 2304
          neuron projection 1531
            photoreceptor cell cilium 117
              photoreceptor connecting cilium + 48
              photoreceptor outer segment + 85
Path 2
Term Annotations click to browse term
  cellular_component 23072
    cellular anatomical entity 18765
      cell projection 2526
        plasma membrane bounded cell projection 2304
          cilium 657
            non-motile cilium 163
              9+0 non-motile cilium 125
                photoreceptor cell cilium 117
                  photoreceptor connecting cilium + 48
                  photoreceptor outer segment + 85
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.