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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell cilium
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Accession:GO:0097733 term browser browse the term
Definition:A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.
Synonyms:exact_synonym: photoreceptor cilium


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photoreceptor cell cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PEX6 peroxisomal biogenesis factor 6 JBrowse link 7 38,039,852 38,052,384 RGD:14298760
G SDCCAG8 SHH signaling and ciliogenesis regulator SDCCAG8 JBrowse link 10 16,191,178 16,441,828 RGD:14298760
cone photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RD3 retinal degeneration 3, GUCY2D regulator JBrowse link 9 131,712,858 131,716,179 RGD:14298760
G TMEM237 transmembrane protein 237 JBrowse link 15 105,255,485 105,276,624 RGD:14298760
photoreceptor connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CETN1 centrin 1 JBrowse link 6 105,740,188 105,742,226 RGD:14298760
G CETN3 centrin 3 JBrowse link 2 97,574,003 97,593,320 RGD:14298760
G CFAP410 cilia and flagella associated protein 410 JBrowse link 13 207,196,884 207,204,741 RGD:14298760
G FAM161A FAM161 centrosomal protein A JBrowse link 3 79,952,698 79,978,584 RGD:14298760
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 13 32,671,377 32,678,394 RGD:14298760
G IFT122 intraflagellar transport 122 JBrowse link 13 68,828,710 68,902,062 RGD:14298760
G IFT140 intraflagellar transport 140 JBrowse link 3 40,309,298 40,372,139 RGD:14298760
G IFT20 intraflagellar transport 20 JBrowse link 12 44,609,586 44,616,685 RGD:14298760
G IFT52 intraflagellar transport 52 JBrowse link 17 46,209,956 46,246,696 RGD:14298760
G IFT57 intraflagellar transport 57 JBrowse link 13 151,298,552 151,356,715 RGD:14298760
G KIF17 kinesin family member 17 RGD:14298760
G KIFAP3 kinesin associated protein 3 JBrowse link 4 80,922,032 81,105,135 RGD:14298760
G LCA5 lebercilin LCA5 JBrowse link 1 86,596,967 86,685,073 RGD:14298760
G MAK male germ cell associated kinase JBrowse link 7 7,482,089 7,538,373 RGD:14298760
G MYO7A myosin VIIA JBrowse link 9 11,251,187 11,337,618 RGD:14298760
G PDZD7 PDZ domain containing 7 JBrowse link 14 112,088,332 112,111,348 RGD:14298760
G RPGRIP1 RPGR interacting protein 1 JBrowse link 7 77,813,964 77,903,973 RGD:14298760
G SEPTIN2 septin 2 JBrowse link 15 140,023,836 140,058,291 RGD:14298760
G SPTBN5 spectrin beta, non-erythrocytic 5 JBrowse link 1 129,461,598 129,514,380 RGD:14298760
G TMEM237 transmembrane protein 237 JBrowse link 15 105,255,485 105,276,624 RGD:14298760
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase JBrowse link 10 33,865,967 33,878,135 RGD:14298760
G TSGA10IP testis specific 10 interacting protein JBrowse link 2 6,374,617 6,391,457 RGD:14298760
G TTC8 tetratricopeptide repeat domain 8 JBrowse link 7 110,731,729 110,783,999 RGD:14298760
G USH1C USH1 protein network component harmonin JBrowse link 2 41,593,793 41,646,777 RGD:14298760
G USH1G USH1 protein network component sans JBrowse link 12 6,333,640 6,341,083 RGD:14298760
G WDR19 WD repeat domain 19 JBrowse link 8 30,453,969 30,553,699 RGD:14298760
G WHRN whirlin JBrowse link 1 255,009,765 255,095,281 RGD:14298760
photoreceptor disc membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RHO rhodopsin JBrowse link 13 68,908,578 68,913,651 RGD:14298760
G SPTBN5 spectrin beta, non-erythrocytic 5 JBrowse link 1 129,461,598 129,514,380 RGD:14298760
photoreceptor distal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPHP4 nephrocystin 4 JBrowse link 6 66,815,282 66,928,245 RGD:14298760
G SPATA7 spermatogenesis associated 7 JBrowse link 7 110,309,414 110,368,370 RGD:14298760
photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCA4 ATP binding cassette subfamily A member 4 JBrowse link 4 123,202,720 123,333,044 RGD:14298760
G ARR3 arrestin 3 JBrowse link X 56,295,107 56,310,507 RGD:14298760
G BBS7 Bardet-Biedl syndrome 7 RGD:14298760
G CERKL ceramide kinase like JBrowse link 15 87,029,237 87,159,555 RGD:14298760
G CFAP410 cilia and flagella associated protein 410 JBrowse link 13 207,196,884 207,204,741 RGD:14298760
G CIB2 calcium and integrin binding family member 2 JBrowse link 7 47,807,806 47,813,400 RGD:14298760
G CNGB3 cyclic nucleotide gated channel subunit beta 3 JBrowse link 4 50,112,927 50,263,264 RGD:14298760
G GNA11 G protein subunit alpha 11 JBrowse link 2 75,439,405 75,456,855 RGD:14298760
G GNAQ G protein subunit alpha q JBrowse link 1 230,607,469 230,906,988 RGD:14298760
G GNAT1 G protein subunit alpha transducin 1 JBrowse link 13 32,671,377 32,678,394 RGD:14298760
G GNAT2 G protein subunit alpha transducin 2 JBrowse link 4 110,512,349 110,523,222 RGD:14298760
G GNB1 G protein subunit beta 1 JBrowse link 6 63,867,155 63,957,514 RGD:14298760
G GUCA1A guanylate cyclase activator 1A JBrowse link 7 37,282,630 37,296,713 RGD:14298760
G HNF1A HNF1 homeobox A JBrowse link 14 40,868,819 40,888,322 RGD:14298760
G IFT140 intraflagellar transport 140 JBrowse link 3 40,309,298 40,372,139 RGD:14298760
G IFT20 intraflagellar transport 20 JBrowse link 12 44,609,586 44,616,685 RGD:14298760
G LOC494564 medium-wave-sensitive opsin JBrowse link X 124,816,014 124,828,225 RGD:14298760
G LYAR Ly1 antibody reactive JBrowse link 8 6,081,332 6,099,861 RGD:14298760
G MAK male germ cell associated kinase JBrowse link 7 7,482,089 7,538,373 RGD:14298760
G MAP1B microtubule associated protein 1B JBrowse link 16 48,403,338 48,501,453 RGD:14298760
G MYO5A myosin VA JBrowse link 1 119,165,751 119,398,591 RGD:14298760
G MYO7A myosin VIIA JBrowse link 9 11,251,187 11,337,618 RGD:14298760
G OCRL OCRL inositol polyphosphate-5-phosphatase JBrowse link X 106,124,991 106,188,066 RGD:14298760
G OPN1SW opsin 1, short wave sensitive JBrowse link 18 19,836,453 19,839,425 RGD:14298760
G OPN5 opsin 5 JBrowse link 7 42,476,125 42,507,181 RGD:14298760
G PCARE photoreceptor cilium actin regulator JBrowse link 3 110,209,100 110,220,608 RGD:14298760
G PDC phosducin JBrowse link 9 127,600,114 127,619,759 RGD:14298760
G PDE6B phosphodiesterase 6B JBrowse link 8 80,378 111,960 RGD:14298760
G PRPH2 peripherin 2 JBrowse link 7 37,788,547 37,805,142 RGD:14298760
G PTGS1 prostaglandin-endoperoxide synthase 1 JBrowse link 1 262,456,106 262,482,159 RGD:14298760
G PTPRK protein tyrosine phosphatase receptor type K JBrowse link 1 34,693,363 35,258,699 RGD:14298760
G RAB27A RAB27A, member RAS oncogene family JBrowse link 1 116,532,816 116,606,477 RGD:14298760
G RGR retinal G protein coupled receptor JBrowse link 14 85,485,210 85,496,393 RGD:14298760
G RGS9BP regulator of G protein signaling 9 binding protein JBrowse link 6 42,560,059 42,563,179 RGD:14298760
G RHO rhodopsin JBrowse link 13 68,908,578 68,913,651 RGD:14298760
G RRH retinal pigment epithelium-derived rhodopsin homolog JBrowse link 8 112,382,208 112,399,622 RGD:14298760
G SAG S-antigen visual arrestin JBrowse link 15 133,704,975 133,741,844 RGD:14298760
G SHANK2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 2 2,517,853 3,016,959 RGD:14298760
G TULP1 TUB like protein 1 JBrowse link 7 31,362,670 31,379,948 RGD:14298760
photoreceptor outer segment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDHR1 cadherin related family member 1 JBrowse link 14 85,429,506 85,455,823 RGD:14298760
G GUCY2D guanylate cyclase 2D, retinal JBrowse link 12 53,200,570 53,250,566 RGD:14298760
G PRCD photoreceptor disc component JBrowse link 12 4,966,627 4,976,694 RGD:14298760
G PROM1 prominin 1 JBrowse link 8 11,215,659 11,331,442 RGD:14298760
G RHO rhodopsin JBrowse link 13 68,908,578 68,913,651 RGD:14298760
G ROM1 retinal outer segment membrane protein 1 JBrowse link 2 9,125,377 9,127,615 RGD:14298760
rod photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 JBrowse link 4 90,341,316 90,371,040 RGD:14298760
G RD3 retinal degeneration 3, GUCY2D regulator JBrowse link 9 131,712,858 131,716,179 RGD:14298760
G SPATA7 spermatogenesis associated 7 JBrowse link 7 110,309,414 110,368,370 RGD:14298760
G TMEM237 transmembrane protein 237 JBrowse link 15 105,255,485 105,276,624 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15481
    cellular anatomical entity 15345
      cell projection 1327
        plasma membrane bounded cell projection 1304
          neuron projection 748
            photoreceptor cell cilium 71
              photoreceptor connecting cilium + 29
              photoreceptor outer segment + 49
Path 2
Term Annotations click to browse term
  cellular_component 15481
    cellular anatomical entity 15345
      cell projection 1327
        plasma membrane bounded cell projection 1304
          cilium 434
            non-motile cilium 106
              9+0 non-motile cilium 87
                photoreceptor cell cilium 71
                  photoreceptor connecting cilium + 29
                  photoreceptor outer segment + 49
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.