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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell cilium
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Accession:GO:0097733 term browser browse the term
Definition:A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.
Synonyms:exact_synonym: photoreceptor cilium


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photoreceptor cell cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 JBrowse link NW_004936740 445,952 478,580 RGD:9068941
G Pex6 peroxisomal biogenesis factor 6 JBrowse link NW_004936476 16,948,137 16,963,601 RGD:9068941
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 JBrowse link NW_004936526 7,202,147 7,431,455 RGD:9068941
cone photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rd3 retinal degeneration 3, GUCY2D regulator JBrowse link NW_004936557 1,852,996 1,873,070 RGD:9068941
G Tmem237 transmembrane protein 237 JBrowse link NW_004936726 872,368 892,185 RGD:9068941
photoreceptor connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl3 ADP ribosylation factor like GTPase 3 JBrowse link NW_004936600 3,190,212 3,229,831 RGD:9068941
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link NW_004936471 31,962,500 32,019,516 RGD:9068941
G Cep290 centrosomal protein 290 JBrowse link NW_004936507 5,223,756 5,305,392 RGD:9068941
G Cetn1 centrin 1 JBrowse link NW_004936550 102,360 103,032 RGD:9068941
G Cetn2 centrin 2 JBrowse link NW_004936714 274,098 279,177 RGD:9068941
G Cetn3 centrin 3 JBrowse link NW_004936469 8,501,572 8,516,722 RGD:9068941
G Cfap410 cilia and flagella associated protein 410 JBrowse link NW_004936500 82,702 90,525 RGD:9068941
G Fam161a FAM161 centrosomal protein A JBrowse link NW_004936491 7,202,877 7,221,493 RGD:9068941
G Gnat1 G protein subunit alpha transducin 1 JBrowse link NW_004936529 1,735,258 1,740,297 RGD:9068941
G Ift122 intraflagellar transport 122 JBrowse link NW_004936602 908,034 956,634 RGD:9068941
G Ift140 intraflagellar transport 140 JBrowse link NW_004936694 2,344,448 2,419,396 RGD:9068941
G Ift20 intraflagellar transport 20 JBrowse link NW_004936538 4,484,484 4,491,688 RGD:9068941
G Ift52 intraflagellar transport 52 JBrowse link NW_004936530 2,965,587 3,003,758 RGD:9068941
G Ift57 intraflagellar transport 57 JBrowse link NW_004936645 1,471,393 1,524,193 RGD:9068941
G Iqcb1 IQ motif containing B1 JBrowse link NW_004936536 8,164,120 8,213,690 RGD:9068941
G Kiaa1549 KIAA1549 ortholog JBrowse link NW_004936592 3,132,166 3,215,835 RGD:9068941
G Kif17 kinesin family member 17 JBrowse link NW_004936474 6,598,641 6,642,491 RGD:9068941
G Kif3a kinesin family member 3A JBrowse link NW_004936647 2,461,017 2,502,550 RGD:9068941
G Kifap3 kinesin associated protein 3 JBrowse link NW_004936481 16,664,025 16,777,440 RGD:9068941
G Lca5 lebercilin LCA5 JBrowse link NW_004936510 10,652,378 10,702,761 RGD:9068941
G Mak male germ cell associated kinase JBrowse link NW_004936534 2,170,853 2,239,647 RGD:9068941
G Myo7a myosin VIIA JBrowse link NW_004936498 5,758,572 5,824,526 RGD:9068941
G Pdzd7 PDZ domain containing 7 JBrowse link NW_004936600 4,660,211 4,678,911 RGD:9068941
G Rp1 RP1 axonemal microtubule associated JBrowse link NW_004936496 1,396,838 1,411,082 RGD:9068941
G Rp1l1 RP1 like 1 JBrowse link NW_004936675 2,527,406 2,564,464 RGD:9068941
G Rpgrip1 RPGR interacting protein 1 JBrowse link NW_004936880 440,900 511,503 RGD:9068941
G Rpgrip1l RPGRIP1 like JBrowse link NW_004936475 6,219,187 6,321,612 RGD:9068941
G Septin2 septin 2 JBrowse link NW_004936745 518,650 555,187 RGD:9068941
G Spata7 spermatogenesis associated 7 JBrowse link NW_004936488 15,878,167 15,911,301 RGD:9068941
G Sptbn5 spectrin beta, non-erythrocytic 5 JBrowse link NW_004936471 5,154,294 5,195,083 RGD:9068941
G Tbcc tubulin folding cofactor C JBrowse link NW_004936476 17,145,956 17,147,299 RGD:9068941
G Tmem237 transmembrane protein 237 JBrowse link NW_004936726 872,368 892,185 RGD:9068941
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase JBrowse link NW_004936524 1,219,101 1,229,937 RGD:9068941
G Tsga10ip testis specific 10 interacting protein JBrowse link NW_004936599 3,589,017 3,600,067 RGD:9068941
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link NW_004936488 16,258,247 16,306,077 RGD:9068941
G Ush1c USH1 protein network component harmonin JBrowse link NW_004936528 1,552,175 1,594,740 RGD:9068941
G Ush1g USH1 protein network component sans JBrowse link NW_004936594 258,115 262,739 RGD:9068941
G Ush2a usherin JBrowse link NW_004936628 2,123,917 2,859,958 RGD:9068941
G Wdr19 WD repeat domain 19 JBrowse link NW_004936482 6,863,592 6,937,810 RGD:9068941
G Whrn whirlin JBrowse link NW_004936487 3,668,465 3,748,234 RGD:9068941
photoreceptor disc membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gnat1 G protein subunit alpha transducin 1 JBrowse link NW_004936529 1,735,258 1,740,297 RGD:9068941
G Gnb1 G protein subunit beta 1 JBrowse link NW_004936737 1,518,855 1,554,926 RGD:9068941
G Gngt1 G protein subunit gamma transducin 1 JBrowse link NW_004936803 67,933 71,508 RGD:9068941
G Grk1 G protein-coupled receptor kinase 1 JBrowse link NW_004936472 152,202 165,134 RGD:9068941
G Grk4 G protein-coupled receptor kinase 4 JBrowse link NW_004936477 20,580,794 20,668,259 RGD:9068941
G Grk7 G protein-coupled receptor kinase 7 JBrowse link NW_004936540 3,516,706 3,553,102 RGD:9068941
G Guca1a guanylate cyclase activator 1A JBrowse link NW_004936476 17,690,484 17,701,288 RGD:9068941
G Guca1b guanylate cyclase activator 1B JBrowse link NW_004936476 17,679,505 17,688,970 RGD:9068941
G Guca1c guanylate cyclase activator 1C JBrowse link NW_004936645 2,527,070 2,556,201 RGD:9068941
G Gucy2d guanylate cyclase 2D, retinal JBrowse link NW_004936595 1,235,747 1,250,294 RGD:9068941
G Gucy2f guanylate cyclase 2F, retinal JBrowse link NW_004936499 5,653,384 5,752,732 RGD:9068941
G Opn1sw opsin 1, short wave sensitive JBrowse link NW_004936479 15,696,063 15,702,311 RGD:9068941
G Opn4 opsin 4 JBrowse link NW_004936804 261,210 272,449 RGD:9068941
G Pde6a phosphodiesterase 6A JBrowse link NW_004936504 5,018,171 5,088,333 RGD:9068941
G Pde6b phosphodiesterase 6B JBrowse link NW_004936477 22,418,037 22,472,251 RGD:9068941
G Pde6g phosphodiesterase 6G JBrowse link NW_004936594 5,263,345 5,267,240 RGD:9068941
G Rho rhodopsin JBrowse link NW_004936602 896,730 901,480 RGD:9068941
G Sptbn5 spectrin beta, non-erythrocytic 5 JBrowse link NW_004936471 5,154,294 5,195,083 RGD:9068941
photoreceptor distal connecting cilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nphp4 nephrocystin 4 JBrowse link NW_004936623 802,152 904,198 RGD:9068941
G Rpgrip1 RPGR interacting protein 1 JBrowse link NW_004936880 440,900 511,503 RGD:9068941
G Spata7 spermatogenesis associated 7 JBrowse link NW_004936488 15,878,167 15,911,301 RGD:9068941
photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arr3 arrestin 3 JBrowse link NW_004936762 1,194,251 1,207,914 RGD:9068941
G Atp8a2 ATPase phospholipid transporting 8A2 JBrowse link NW_004936688 299,831 925,444 RGD:9068941
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link NW_004936471 31,962,500 32,019,516 RGD:9068941
G Bbs7 Bardet-Biedl syndrome 7 JBrowse link NW_004936662 1,081,237 1,116,719 RGD:9068941
G Cacna1f calcium voltage-gated channel subunit alpha1 F JBrowse link NW_004936721 1,078,570 1,106,153 RGD:9068941
G Ccdc66 coiled-coil domain containing 66 JBrowse link NW_004936473 7,027,543 7,054,079 RGD:9068941
G Cep250 centrosomal protein 250 JBrowse link NW_004936561 5,283,258 5,331,688 RGD:9068941
G Cerkl ceramide kinase like JBrowse link NW_004936509 10,294,247 10,404,743 RGD:9068941
G Cfap410 cilia and flagella associated protein 410 JBrowse link NW_004936500 82,702 90,525 RGD:9068941
G Cib2 calcium and integrin binding family member 2 JBrowse link NW_004936471 36,859,018 36,879,170 RGD:9068941
G Cngb1 cyclic nucleotide gated channel subunit beta 1 JBrowse link NW_004936475 9,844,438 9,908,009 RGD:9068941
G Cngb3 cyclic nucleotide gated channel subunit beta 3 JBrowse link NW_004936544 1,166,896 1,305,339 RGD:9068941
G Eys eyes shut homolog JBrowse link NW_004936476 158,391 1,289,639 RGD:9068941
G Gna11 G protein subunit alpha 11 JBrowse link NW_004936588 1,770,777 1,789,143 RGD:9068941
G Gnaq G protein subunit alpha q JBrowse link NW_004936503 13,098,517 13,276,106 RGD:9068941
G Gnat1 G protein subunit alpha transducin 1 JBrowse link NW_004936529 1,735,258 1,740,297 RGD:9068941
G Gnat2 G protein subunit alpha transducin 2 JBrowse link NW_004936704 1,079,255 1,093,732 RGD:9068941
G Guca1a guanylate cyclase activator 1A JBrowse link NW_004936476 17,690,484 17,701,288 RGD:9068941
G Guca2b guanylate cyclase activator 2B JBrowse link NW_004936474 23,632,836 23,634,330 RGD:9068941
G Gucy2d guanylate cyclase 2D, retinal JBrowse link NW_004936595 1,235,747 1,250,294 RGD:9068941
G Hnf1a HNF1 homeobox A JBrowse link NW_004936668 62,103 81,549 RGD:9068941
G Ift140 intraflagellar transport 140 JBrowse link NW_004936694 2,344,448 2,419,396 RGD:9068941
G Ift20 intraflagellar transport 20 JBrowse link NW_004936538 4,484,484 4,491,688 RGD:9068941
G Impg1 interphotoreceptor matrix proteoglycan 1 JBrowse link NW_004936788 1,258,547 1,401,910 RGD:9068941
G Inha inhibin subunit alpha JBrowse link NW_004936569 1,949,747 1,954,179 RGD:9068941
G Iqcb1 IQ motif containing B1 JBrowse link NW_004936536 8,164,120 8,213,690 RGD:9068941
G LOC101965031 protocadherin-15 JBrowse link NW_004936910 233,800 602,145 RGD:9068941
G LOC101967789 SH3 and multiple ankyrin repeat domains protein 2 JBrowse link NW_004936599 196,512 463,749 RGD:9068941
G Lyar Ly1 antibody reactive JBrowse link NW_004936477 16,934,401 16,958,722 RGD:9068941
G Mak male germ cell associated kinase JBrowse link NW_004936534 2,170,853 2,239,647 RGD:9068941
G Map1b microtubule associated protein 1B JBrowse link NW_004936549 4,266,371 4,371,579 RGD:9068941
G Mertk MER proto-oncogene, tyrosine kinase JBrowse link NW_004936783 607,425 704,879 RGD:9068941
G Myo5a myosin VA JBrowse link NW_004936471 14,105,832 14,257,386 RGD:9068941
G Myo7a myosin VIIA JBrowse link NW_004936498 5,758,572 5,824,526 RGD:9068941
G Ocrl OCRL inositol polyphosphate-5-phosphatase JBrowse link NW_004936479 1,955,362 2,011,608 RGD:9068941
G Opn1sw opsin 1, short wave sensitive JBrowse link NW_004936479 15,696,063 15,702,311 RGD:9068941
G Opn3 opsin 3 JBrowse link NW_004936526 8,833,495 8,876,631 RGD:9068941
G Opn5 opsin 5 JBrowse link NW_004936476 12,740,038 12,766,310 RGD:9068941
G Pcare photoreceptor cilium actin regulator JBrowse link NW_004936493 3,768,032 3,781,511 RGD:9068941
G Pdc phosducin JBrowse link NW_004936481 3,974,831 3,995,431 RGD:9068941
G Pex6 peroxisomal biogenesis factor 6 JBrowse link NW_004936476 16,948,137 16,963,601 RGD:9068941
G Ppef2 protein phosphatase with EF-hand domain 2 JBrowse link NW_004936598 65,009 102,349 RGD:9068941
G Prom1 prominin 1 JBrowse link NW_004936477 11,878,261 12,017,228 RGD:9068941
G Prph2 peripherin 2 JBrowse link NW_004936476 17,159,756 17,174,226 RGD:9068941
G Ptgs1 prostaglandin-endoperoxide synthase 1 JBrowse link NW_004936487 10,745,465 10,758,812 RGD:9068941
G Ptprk protein tyrosine phosphatase receptor type K JBrowse link NW_004936639 1,279,795 1,683,944 RGD:9068941
G Rab27a RAB27A, member RAS oncogene family JBrowse link NW_004936471 16,738,204 16,815,561 RGD:9068941
G Rcvrn recoverin JBrowse link NW_004936595 2,873,739 2,882,150 RGD:9068941
G Rd3 retinal degeneration 3, GUCY2D regulator JBrowse link NW_004936557 1,852,996 1,873,070 RGD:9068941
G Rgr retinal G protein coupled receptor JBrowse link NW_004936767 855,811 866,941 RGD:9068941
G Rgs9bp regulator of G protein signaling 9 binding protein JBrowse link NW_004936570 3,042,233 3,043,884 RGD:9068941
G Rho rhodopsin JBrowse link NW_004936602 896,730 901,480 RGD:9068941
G Rp1 RP1 axonemal microtubule associated JBrowse link NW_004936496 1,396,838 1,411,082 RGD:9068941
G Rp1l1 RP1 like 1 JBrowse link NW_004936675 2,527,406 2,564,464 RGD:9068941
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link NW_004936502 5,163,164 5,212,940 RGD:9068941
G Rrh retinal pigment epithelium-derived rhodopsin homolog JBrowse link NW_004936563 1,017,272 1,032,486 RGD:9068941
G Sag S-antigen visual arrestin JBrowse link NW_004936525 3,932,118 3,965,651 RGD:9068941
G Tulp1 TUB like protein 1 JBrowse link NW_004936476 23,744,707 23,757,002 RGD:9068941
G Ush1c USH1 protein network component harmonin JBrowse link NW_004936528 1,552,175 1,594,740 RGD:9068941
G Vcan versican JBrowse link NW_004936469 2,585,142 2,688,029 RGD:9068941
G Wdr19 WD repeat domain 19 JBrowse link NW_004936482 6,863,592 6,937,810 RGD:9068941
photoreceptor outer segment membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdhr1 cadherin related family member 1 JBrowse link NW_004936767 805,910 829,838 RGD:9068941
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 JBrowse link NW_004936482 14,091,343 14,107,793 RGD:9068941
G Dhrs3 dehydrogenase/reductase 3 JBrowse link NW_004936474 1,237,177 1,270,299 RGD:9068941
G Gnat1 G protein subunit alpha transducin 1 JBrowse link NW_004936529 1,735,258 1,740,297 RGD:9068941
G Gnat2 G protein subunit alpha transducin 2 JBrowse link NW_004936704 1,079,255 1,093,732 RGD:9068941
G Gnb1 G protein subunit beta 1 JBrowse link NW_004936737 1,518,855 1,554,926 RGD:9068941
G Gucy2d guanylate cyclase 2D, retinal JBrowse link NW_004936595 1,235,747 1,250,294 RGD:9068941
G Napepld N-acyl phosphatidylethanolamine phospholipase D JBrowse link NW_004936479 20,259,260 20,293,116 RGD:9068941
G Pde6g phosphodiesterase 6G JBrowse link NW_004936594 5,263,345 5,267,240 RGD:9068941
G Pde6h phosphodiesterase 6H JBrowse link NW_004936587 2,505,755 2,514,103 RGD:9068941
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 JBrowse link NW_004936475 22,074,620 22,138,308 RGD:9068941
G Prcd photoreceptor disc component JBrowse link NW_004936594 1,615,165 1,628,455 RGD:9068941
G Prom1 prominin 1 JBrowse link NW_004936477 11,878,261 12,017,228 RGD:9068941
G Rho rhodopsin JBrowse link NW_004936602 896,730 901,480 RGD:9068941
G Rom1 retinal outer segment membrane protein 1 JBrowse link NW_004936581 642,322 644,286 RGD:9068941
rod photoreceptor outer segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 JBrowse link NW_004936740 445,952 478,580 RGD:9068941
G Gucy2f guanylate cyclase 2F, retinal JBrowse link NW_004936499 5,653,384 5,752,732 RGD:9068941
G Rd3 retinal degeneration 3, GUCY2D regulator JBrowse link NW_004936557 1,852,996 1,873,070 RGD:9068941
G Spata7 spermatogenesis associated 7 JBrowse link NW_004936488 15,878,167 15,911,301 RGD:9068941
G Tmem237 transmembrane protein 237 JBrowse link NW_004936726 872,368 892,185 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15531
    cellular anatomical entity 15411
      cell projection 2217
        plasma membrane bounded cell projection 2130
          neuron projection 1329
            photoreceptor cell cilium 112
              photoreceptor connecting cilium + 41
              photoreceptor outer segment + 85
Path 2
Term Annotations click to browse term
  cellular_component 15531
    cellular anatomical entity 15411
      cell projection 2217
        plasma membrane bounded cell projection 2130
          cilium 619
            non-motile cilium 155
              9+0 non-motile cilium 130
                photoreceptor cell cilium 112
                  photoreceptor connecting cilium + 41
                  photoreceptor outer segment + 85
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.