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ONTOLOGY REPORT - ANNOTATIONS


Term:Schaffer collateral - CA1 synapse
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Accession:GO:0098685 term browser browse the term
Definition:A synapse between the Schaffer collateral axon of a CA3 pyramidal cell and a CA1 pyramidal cell.


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Schaffer collateral - CA1 synapse term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abr ABR activator of RhoGEF and GTPase JBrowse link 10 64,565,121 64,657,079 RGD:1624291
RGD:1600115
G Actb actin, beta JBrowse link 12 13,715,843 13,718,813 RGD:1600115
RGD:1624291
G Actg1 actin, gamma 1 JBrowse link 10 109,518,429 109,521,288 RGD:1624291
G Adcy1 adenylate cyclase 1 JBrowse link 14 87,311,970 87,429,880 RGD:1624291
G Adcy8 adenylate cyclase 8 JBrowse link 7 105,353,883 105,593,372 RGD:1600115
RGD:1624291
G Adora2b adenosine A2B receptor JBrowse link 10 48,569,563 48,586,366 RGD:1600115
RGD:1624291
G Adora3 adenosine A3 receptor JBrowse link 2 208,336,909 208,379,217 RGD:13702310
G Adrb1 adrenoceptor beta 1 JBrowse link 1 277,537,585 277,538,985 RGD:1600115
RGD:1624291
G Akap12 A-kinase anchoring protein 12 JBrowse link 1 40,816,130 40,906,582 RGD:1624291
G Anks1b ankyrin repeat and sterile alpha motif domain containing 1B JBrowse link 7 30,507,135 31,684,604 RGD:1624291
G Apba1 amyloid beta precursor protein binding family A member 1 JBrowse link 1 241,594,565 241,796,512 RGD:1600115
RGD:1624291
G Apba2 amyloid beta precursor protein binding family A member 2 JBrowse link 1 125,367,273 125,547,741 RGD:1624291
G Apbb1 amyloid beta precursor protein binding family B member 1 JBrowse link 1 170,387,625 170,411,263 RGD:1624291
G Baiap2 BAR/IMD domain containing adaptor protein 2 JBrowse link 10 109,107,326 109,187,458 RGD:1624291
G Bcr BCR activator of RhoGEF and GTPase JBrowse link 20 14,421,250 14,546,406 RGD:1624291
RGD:1600115
G Bsn bassoon (presynaptic cytomatrix protein) JBrowse link 8 116,873,721 116,965,396 RGD:1600115
RGD:1624291
G Cacna1b calcium voltage-gated channel subunit alpha1 B JBrowse link 3 1,740,026 1,924,959 RGD:13792530
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 JBrowse link 7 119,228,112 119,353,332 RGD:1624291
G Cacng3 calcium voltage-gated channel auxiliary subunit gamma 3 JBrowse link 1 192,613,766 192,708,371 RGD:1624291
G Cacng8 calcium voltage-gated channel auxiliary subunit gamma 8 JBrowse link 1 64,330,106 64,350,338 RGD:1624291
G Cadm1 cell adhesion molecule 1 JBrowse link 8 51,858,906 52,200,591 RGD:1624291
G Camk2a calcium/calmodulin-dependent protein kinase II alpha JBrowse link 18 56,193,978 56,295,869 RGD:1600115
RGD:1624291
G Capzb capping actin protein of muscle Z-line subunit beta JBrowse link 5 157,642,742 157,742,487 RGD:1624291
RGD:1600115
G Cask calcium/calmodulin dependent serine protein kinase JBrowse link X 9,815,652 10,156,155 RGD:1624291
G Cdc42 cell division cycle 42 JBrowse link 5 155,690,267 155,728,385 RGD:5688281
G Cdh11 cadherin 11 JBrowse link 19 2,391,181 2,551,245 RGD:1624291
G Cdk5 cyclin-dependent kinase 5 JBrowse link 4 7,282,945 7,287,427 RGD:8554385
G Chrm1 cholinergic receptor, muscarinic 1 JBrowse link 1 224,869,087 224,885,101 RGD:1624291
G Cplx1 complexin 1 JBrowse link 14 2,194,895 2,226,610 RGD:1624291
G Csnk2b casein kinase 2 beta JBrowse link 20 5,108,692 5,113,675 RGD:13702409
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1600115
RGD:1624291
G Ctnnd1 catenin delta 1 JBrowse link 3 72,001,904 72,053,047 RGD:2316208
G Dcc DCC netrin 1 receptor JBrowse link 18 66,518,213 67,629,801 RGD:1600115
RGD:1624291
G Dgkb diacylglycerol kinase, beta JBrowse link 6 57,516,351 58,277,385 RGD:1600115
RGD:1624291
G Dgki diacylglycerol kinase, iota JBrowse link 4 64,365,115 64,831,473 RGD:1624291
G Dgkz diacylglycerol kinase zeta JBrowse link 3 80,844,002 80,886,487 RGD:1624291
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:1600115
RGD:1624291
G Dvl1 dishevelled segment polarity protein 1 JBrowse link 5 173,295,948 173,308,014 RGD:1624291
G Efnb2 ephrin B2 JBrowse link 16 86,631,151 86,672,050 RGD:1624291
G Epha4 Eph receptor A4 JBrowse link 9 83,111,222 83,253,486 RGD:1624291
G Epha7 Eph receptor A7 JBrowse link 5 43,602,744 43,761,198 RGD:13702137
G Epn1 Epsin 1 JBrowse link 1 72,294,153 72,310,217 RGD:11567253
G Fbxl20 F-box and leucine-rich repeat protein 20 JBrowse link 10 86,036,745 86,099,699 RGD:1600115
RGD:1624291
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:11059594
RGD:1624291
G Fyn FYN proto-oncogene, Src family tyrosine kinase JBrowse link 20 44,436,354 44,630,316 RGD:1624291
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 JBrowse link 20 1,955,344 1,984,907 RGD:1600115
RGD:1624291
G Ghrl ghrelin and obestatin prepropeptide JBrowse link 4 145,674,157 145,678,066 RGD:13702301
G Ghsr growth hormone secretagogue receptor JBrowse link 2 113,065,953 113,071,265 RGD:13702301
G Gipc1 GIPC PDZ domain containing family, member 1 JBrowse link 19 24,786,604 24,798,231 RGD:1624291
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 JBrowse link 2 179,584,302 179,704,629 RGD:13702386
RGD:8553683
RGD:1624291
G Grm1 glutamate metabotropic receptor 1 JBrowse link 1 4,753,141 5,165,859 RGD:1600115
RGD:1624291
G Grm5 glutamate metabotropic receptor 5 JBrowse link 1 151,207,846 151,785,038 RGD:1600115
RGD:1624291
G Gsg1l GSG1-like JBrowse link 1 197,271,704 197,482,776 RGD:1624291
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:13702314
G Ina internexin neuronal intermediate filament protein, alpha JBrowse link 1 266,782,835 266,794,389 RGD:1600115
RGD:1624291
G Iqsec1 IQ motif and Sec7 domain ArfGEF 1 JBrowse link 4 123,400,717 123,454,656 RGD:1624291
G Iqsec2 IQ motif and Sec7 domain ArfGEF 2 JBrowse link X 22,212,137 22,293,810 RGD:1624291
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:1600115
RGD:1624291
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 JBrowse link 4 140,247,297 140,580,749 RGD:1600115
RGD:1624291
G L1cam L1 cell adhesion molecule JBrowse link X 156,901,244 156,928,064 RGD:13702438
G LOC100909840 profilin-2-like JBrowse link 2 148,044,714 148,050,464 RGD:1600115
G LOC100910506 peripheral plasma membrane protein CASK-like JBrowse link X 9,412,679 9,472,935 RGD:1600115
G LOC100911796 adenosine receptor A3-like JBrowse link 2 208,492,231 208,536,910 RGD:13702310
G Lrfn2 leucine rich repeat and fibronectin type III domain containing 2 JBrowse link 9 13,845,756 14,015,360 RGD:1600115
RGD:1624291
G Lrrc4 leucine rich repeat containing 4 JBrowse link 4 56,110,658 56,114,254 RGD:1624291
G Lrrc4c leucine rich repeat containing 4C JBrowse link 3 85,421,169 86,821,783 RGD:1624291
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 JBrowse link 18 28,012,877 28,017,925 RGD:8554788
G Mpp2 membrane palmitoylated protein 2 JBrowse link 10 89,998,284 90,030,766 RGD:1624291
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:13702420
G Myo5b myosin Vb JBrowse link 18 70,426,865 70,729,985 RGD:11533643
RGD:1624291
G Myo6 myosin VI JBrowse link 8 87,583,649 87,731,271 RGD:1624291
G Ncam1 neural cell adhesion molecule 1 JBrowse link 8 53,836,797 54,134,881 RGD:13702438
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:1624291
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:1624291
G Nptn neuroplastin JBrowse link 8 63,379,062 63,445,694 RGD:8553916
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
G Ntng1 netrin G1 JBrowse link 2 212,695,464 213,073,046 RGD:1624291
G Ntng2 netrin G2 JBrowse link 3 7,742,511 7,800,834 RGD:1624291
G P2rx3 purinergic receptor P2X 3 JBrowse link 3 72,403,992 72,447,801 RGD:1624291
G Pcdh8 protocadherin 8 JBrowse link 15 62,196,469 62,201,498 RGD:68758
G Pde4a phosphodiesterase 4A JBrowse link 8 22,189,533 22,234,036 RGD:13702343
G Pfn1 profilin 1 JBrowse link 10 57,273,003 57,275,708 RGD:13702446
G Pfn2 profilin 2 JBrowse link 2 147,953,858 147,959,692 RGD:1600115
RGD:1624291
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:1600759
G Plat plasminogen activator, tissue type JBrowse link 16 74,098,263 74,122,897 RGD:1624291
G Plcg1 phospholipase C, gamma 1 JBrowse link 3 156,727,642 156,758,307 RGD:1600115
RGD:1624291
G Plg plasminogen JBrowse link 1 48,521,828 48,563,895 RGD:1624291
G Ppp3ca protein phosphatase 3 catalytic subunit alpha JBrowse link 2 241,909,332 242,186,861 RGD:1624291
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha JBrowse link 14 100,311,224 100,360,879 RGD:1624291
G Prkar1b protein kinase cAMP-dependent type I regulatory subunit beta JBrowse link 12 17,614,536 17,713,567 RGD:1624291
G Prkci protein kinase C, iota JBrowse link 2 115,941,998 116,002,550 RGD:13702261
G Prkcz protein kinase C, zeta JBrowse link 5 172,658,071 172,769,492 RGD:13702194
G Ptpra protein tyrosine phosphatase, receptor type, A JBrowse link 3 122,976,066 123,084,585 RGD:1600115
RGD:1624291
G Ptprd protein tyrosine phosphatase, receptor type, D JBrowse link 5 92,862,229 93,514,071 RGD:1624291
G Ptprs protein tyrosine phosphatase, receptor type, S JBrowse link 9 10,585,360 10,646,205 RGD:1600115
RGD:1624291
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:2306457
G Rnf216 ring finger protein 216 JBrowse link 12 13,508,429 13,631,689 RGD:11553202
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:1624291
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 JBrowse link 9 11,031,847 11,055,285 RGD:13464360
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 JBrowse link 5 103,479,767 103,654,507 RGD:13464360
G Shank1 SH3 and multiple ankyrin repeat domains 1 JBrowse link 1 100,297,137 100,344,377 RGD:1624291
G Slc16a7 solute carrier family 16 member 7 JBrowse link 7 68,438,341 68,606,312 RGD:13702297
G Slc30a1 solute carrier family 30 member 1 JBrowse link 13 110,677,810 110,681,683 RGD:13702407
G Slc6a7 solute carrier family 6 member 7 JBrowse link 18 56,305,765 56,325,179 RGD:13702417
G Snap91 synaptosome associated protein 91 JBrowse link 8 94,447,558 94,564,772 RGD:1600759
G Srgn serglycin JBrowse link 20 32,120,317 32,158,071 RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:13702421
G Stx3 syntaxin 3 JBrowse link 1 228,137,781 228,195,004 RGD:1624291
G Stxbp5 syntaxin binding protein 5 JBrowse link 1 3,858,917 4,011,684 RGD:1299498
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:1624291
G Syn2 synapsin II JBrowse link 4 147,037,179 147,195,096 RGD:1600115
RGD:1624291
G Synj1 synaptojanin 1 JBrowse link 11 31,105,784 31,181,573 RGD:1624291
G Synpo synaptopodin JBrowse link 18 55,863,081 55,921,412 RGD:1624291
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:1600115
RGD:1624291
G Syt11 synaptotagmin 11 JBrowse link 2 188,112,301 188,138,180 RGD:11079184
G Tamalin trafficking regulator and scaffold protein tamalin JBrowse link 7 142,869,785 142,877,551 RGD:1624291
G Tnr tenascin R JBrowse link 13 77,602,249 77,678,385 RGD:1600115
RGD:1624291
G Tubb2b tubulin, beta 2B class IIb JBrowse link 17 31,441,640 31,444,687 RGD:1624291
G Wnt7a Wnt family member 7A JBrowse link 4 122,994,425 123,040,609 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20119
    cellular anatomical entity 19775
      cell junction 2166
        synapse 1579
          Schaffer collateral - CA1 synapse 119
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.