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ONTOLOGY REPORT - ANNOTATIONS


Term:lytic vacuole membrane
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Accession:GO:0098852 term browser browse the term
Definition:The lipid bilayer surrounding a lytic vacuole and separating its contents from the cytoplasm of the cell.


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azurophil granule membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VAMP1 vesicle associated membrane protein 1 NOT ISO (PMID:11391393) UniProtKB PMID:11391393 NCBI chr27:38,518,978...38,526,361
Ensembl chr27:38,518,974...38,559,455
JBrowse link
G VAMP7 vesicle associated membrane protein 7 ISO (PMID:16677249) UniProtKB PMID:16677249 NCBI chr  X:123,717,524...123,783,781
Ensembl chr  X:123,717,446...123,783,014
JBrowse link
G VAMP8 vesicle associated membrane protein 8 ISO (PMID:16677249) UniProtKB PMID:16677249 NCBI chr17:39,497,628...39,501,734
Ensembl chr17:39,497,785...39,501,739
JBrowse link
chaperone-mediated autophagy translocation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMP2 lysosomal associated membrane protein 2 ISO (PMID:8662539) ParkinsonsUK-UCL PMID:8662539 NCBI chr  X:92,405,946...92,444,527
Ensembl chr  X:92,407,950...92,444,765
JBrowse link
cytoplasmic side of lysosomal membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr27:33,839,345...33,949,056
Ensembl chr27:33,837,318...33,934,896
JBrowse link
G CDIP1 cell death inducing p53 target 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:36,854,124...36,880,231
Ensembl chr 6:36,854,141...36,880,230
JBrowse link
G GFAP glial fibrillary acidic protein ISO PMID:20797626 ParkinsonsUK-UCL PMID:20797626 RGD:10412296 NCBI chr 9:18,569,868...18,579,463
Ensembl chr 9:18,569,892...18,579,461
JBrowse link
G LITAF lipopolysaccharide induced TNF factor IEA Ensembl GO_REF:0000107 NCBI chr 6:31,229,153...31,259,670 JBrowse link
endolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLEC16A C-type lectin domain containing 16A IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:31,560,940...31,757,100
Ensembl chr 6:31,562,834...31,757,678
JBrowse link
G SLC15A4 solute carrier family 15 member 4 IEA Ensembl GO_REF:0000107 NCBI chr26:2,803,798...2,832,057
Ensembl chr26:2,802,724...2,831,530
JBrowse link
G TASL TLR adaptor interacting with endolysosomal SLC15A4 ISO (PMID:32433612) UniProt PMID:32433612 NCBI chr  X:25,664,361...25,679,044 JBrowse link
extrinsic component of lysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB7A RAB7A, member RAS oncogene family ISS
IEA
GO_Central
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr20:2,704,716...2,776,518
Ensembl chr20:2,704,752...2,826,636
JBrowse link
integral component of lysosomal membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 IEA Ensembl GO_REF:0000107 NCBI chr 2:81,196,355...81,215,736
Ensembl chr 2:81,196,463...81,215,689
JBrowse link
G LOC106559493 small regulatory polypeptide of amino acid response-like ISO (PMID:28024296) UniProtKB PMID:28024296 NCBI chr11:52,424,607...52,427,288
Ensembl chr11:52,426,076...52,426,303
JBrowse link
G NPC1 NPC intracellular cholesterol transporter 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:64,764,941...64,802,507
Ensembl chr 7:64,760,121...64,802,902
JBrowse link
G SLC15A4 solute carrier family 15 member 4 IEA Ensembl GO_REF:0000107 NCBI chr26:2,803,798...2,832,057
Ensembl chr26:2,802,724...2,831,530
JBrowse link
G SLC38A9 solute carrier family 38 member 9 IEA Ensembl GO_REF:0000107 NCBI chr 2:42,921,906...43,004,265
Ensembl chr 2:42,922,494...42,991,577
JBrowse link
G SLC46A3 solute carrier family 46 member 3 ISO (PMID:26631267) FlyBase PMID:26631267 NCBI chr25:11,031,696...11,050,265
Ensembl chr25:11,032,483...11,049,433
JBrowse link
lysosomal membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB9 ATP binding cassette subfamily B member 9 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr26:6,538,705...6,569,074
Ensembl chr26:6,544,796...6,576,237
JBrowse link
G ABCD1 ATP binding cassette subfamily D member 1 IEA Ensembl GO_REF:0000107 NCBI chr  X:121,545,690...121,564,117
Ensembl chr  X:121,545,586...121,563,186
JBrowse link
G ABCD4 ATP binding cassette subfamily D member 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:47,488,414...47,507,041
Ensembl chr 8:47,488,475...47,504,654
JBrowse link
G ABHD6 abhydrolase domain containing 6, acylglycerol lipase IEA Ensembl GO_REF:0000107 NCBI chr20:32,301,120...32,331,030
Ensembl chr20:32,302,104...32,330,998
JBrowse link
G ANXA2 annexin A2 IEA Ensembl GO_REF:0000107 NCBI chr30:25,176,845...25,210,244
Ensembl chr30:25,115,842...25,218,281
JBrowse link
G ANXA6 annexin A6 IEA Ensembl GO_REF:0000107 NCBI chr 4:58,091,186...58,140,102
Ensembl chr 4:58,091,251...58,139,372
JBrowse link
G AP5M1 adaptor related protein complex 5 subunit mu 1 IEA UniProt GO_REF:0000044 NCBI chr 4:79,914,436...79,982,053
Ensembl chr 8:32,848,205...32,902,815
JBrowse link
G ARL8B ADP ribosylation factor like GTPase 8B colocalizes_with IBA
ISO
(PMID:21873635)
(PMID:25898167)
GO_Central
UniProtKB
PMID:21873635, PMID:25898167 NCBI chr20:12,479,680...12,525,330
Ensembl chr20:12,481,860...12,525,499
JBrowse link
G ATP13A2 ATPase cation transporting 13A2 ISO (PMID:23499937) ParkinsonsUK-UCL PMID:23499937 NCBI chr 2:81,196,355...81,215,736
Ensembl chr 2:81,196,463...81,215,689
JBrowse link
G ATP6V0D1 ATPase H+ transporting V0 subunit d1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:81,926,589...81,965,959
Ensembl chr 5:81,926,612...81,965,526
JBrowse link
G ATP6V0D2 ATPase H+ transporting V0 subunit d2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:32,336,304...32,378,818
Ensembl chr29:32,336,467...32,378,527
JBrowse link
G ATRAID all-trans retinoic acid induced differentiation factor IEA Ensembl GO_REF:0000107 NCBI chr17:21,193,685...21,198,897
Ensembl chr17:21,193,909...21,198,718
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 IEA UniProt GO_REF:0000044 NCBI chr10:116,993...120,244 JBrowse link
G BORCS5 BLOC-1 related complex subunit 5 IEA UniProt GO_REF:0000044 NCBI chr27:33,839,345...33,949,056
Ensembl chr27:33,837,318...33,934,896
JBrowse link
G BORCS8 BLOC-1 related complex subunit 8 IEA UniProt GO_REF:0000044 NCBI chr20:43,983,476...43,994,575
Ensembl chr20:43,984,075...43,992,955
JBrowse link
G BRI3 brain protein I3 IEA UniProt GO_REF:0000044 NCBI chr 6:11,046,861...11,065,180
Ensembl chr 6:11,054,189...11,064,137
JBrowse link
G CCZ1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated IEA UniProt GO_REF:0000044 NCBI chr 6:11,319,191...11,350,018 JBrowse link
G CD63 CD63 molecule IEA UniProt GO_REF:0000044 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G CD68 CD68 molecule IEA UniProt GO_REF:0000044 NCBI chr 5:32,500,899...32,503,355
Ensembl chr 5:32,501,380...32,503,183
JBrowse link
G CEP192 centrosomal protein 192 IEA UniProt GO_REF:0000044 NCBI chr 7:78,401,273...78,541,918
Ensembl chr 7:78,351,992...78,541,669
JBrowse link
G CLCN3 chloride voltage-gated channel 3 IEA UniProt GO_REF:0000044 NCBI chr25:20,528,708...20,616,687
Ensembl chr25:20,528,699...20,615,070
JBrowse link
G CLCN4 chloride voltage-gated channel 4 IEA Ensembl GO_REF:0000107 NCBI chr  X:6,853,184...6,921,478
Ensembl chr  X:6,854,728...6,917,594
JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISS
IEA
UniProtKB
UniProt
GO_REF:0000024, GO_REF:0000044 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033
JBrowse link
G CLN5 CLN5 intracellular trafficking protein ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr22:30,568,572...30,575,890
Ensembl chr22:30,568,572...30,575,890
JBrowse link
G CTNS cystinosin, lysosomal cystine transporter IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:47,474,488...47,490,951
Ensembl chr 9:47,473,901...47,490,252
JBrowse link
G CTSA cathepsin A ISO PMID:12505983 ParkinsonsUK-UCL PMID:12505983 RGD:10412300 NCBI chr24:33,183,090...33,189,248
Ensembl chr24:33,183,090...33,189,248
JBrowse link
G CTSD cathepsin D ISO (PMID:17188016) ARUK-UCL PMID:17188016 NCBI chr18:46,010,440...46,019,457
Ensembl chr18:46,010,440...46,019,457
JBrowse link
G CUBN cubilin IEA UniProt GO_REF:0000044 NCBI chr 2:19,784,125...20,041,840
Ensembl chr 2:19,784,198...20,041,839
JBrowse link
G CYB561 cytochrome b561 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:11,461,738...11,474,413
Ensembl chr 9:11,463,585...11,468,282
JBrowse link
G CYB561A3 cytochrome b561 family member A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:55,039,788...55,049,739
Ensembl chr18:55,043,942...55,049,143
JBrowse link
G CYBRD1 cytochrome b reductase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr36:15,970,873...16,001,296
Ensembl chr36:15,970,946...15,997,983
JBrowse link
G DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:24,629,369...24,754,728
Ensembl chr26:24,630,295...24,754,256
JBrowse link
G DLA-79 MHC class Ib ISO (PMID:23851683) UniProt PMID:23851683 NCBI chr18:41,142,312...41,170,018
Ensembl chr18:41,142,307...41,170,100
JBrowse link
G DLA-DMA major histocompatibility complex, class II, DM alpha ISO (MGI:MGI:3033762|PMID:7985028) MGI PMID:7985028 MGI:MGI:3033762 NCBI chr12:2,516,974...2,534,085
Ensembl chr12:2,503,325...2,533,990
JBrowse link
G DLA-DMB major histocompatibility complex, class II, DM beta ISO (MGI:MGI:3033877|PMID:7584146) MGI PMID:7584146 MGI:MGI:3033877 NCBI chr12:2,503,325...2,508,380
Ensembl chr12:2,503,325...2,533,990
JBrowse link
G DLA-DRA MHC class II DR alpha chain IEA Ensembl GO_REF:0000107 NCBI chr12:2,133,026...2,137,825
Ensembl chr12:2,132,499...2,168,975
JBrowse link
G FFAR4 free fatty acid receptor 4 ISO (PMID:22282525) UniProt PMID:22282525 NCBI chr28:7,801,713...7,820,048
Ensembl chr28:7,801,713...7,820,048
JBrowse link
G FLCN folliculin IEA UniProt GO_REF:0000044 NCBI chr 5:42,176,093...42,195,718
Ensembl chr 5:42,176,291...42,195,711
JBrowse link
G FNIP1 folliculin interacting protein 1 IEA UniProt GO_REF:0000044 NCBI chr11:19,979,294...20,134,341
Ensembl chr11:19,979,163...20,134,229
JBrowse link
G FNIP2 folliculin interacting protein 2 IEA UniProt GO_REF:0000044 NCBI chr15:55,871,782...55,962,676
Ensembl chr15:55,830,806...55,959,052
JBrowse link
G GBA glucosylceramidase beta IEA UniProt GO_REF:0000044 NCBI chr 7:42,317,704...42,322,285
Ensembl chr 7:42,317,862...42,322,864
JBrowse link
G GLMP glycosylated lysosomal membrane protein IEA UniProt GO_REF:0000044 NCBI chr 7:41,588,024...41,590,857
Ensembl chr 7:41,588,075...41,590,555
JBrowse link
G GPR137 G protein-coupled receptor 137 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr18:52,776,857...52,781,050
Ensembl chr18:52,776,858...52,779,783
JBrowse link
G GPR137B G protein-coupled receptor 137B IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 4:3,819,338...3,864,690
Ensembl chr 4:3,825,602...3,864,780
JBrowse link
G GPR137C G protein-coupled receptor 137C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:28,795,725...28,861,011
Ensembl chr 8:28,795,732...28,858,831
JBrowse link
G GPR143 G protein-coupled receptor 143 IEA Ensembl GO_REF:0000107 NCBI chr  X:6,438,068...6,479,731
Ensembl chr  X:6,437,660...6,474,447
JBrowse link
G GRN granulin precursor IEA Ensembl GO_REF:0000107 NCBI chr 9:19,077,430...19,085,443
Ensembl chr 9:19,077,427...19,082,268
JBrowse link
G HGSNAT heparan-alpha-glucosaminide N-acetyltransferase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr16:22,640,912...22,683,733
Ensembl chr16:22,642,289...22,683,879
JBrowse link
G HLA-DRB1 MHC class II DLA DRB1 beta chain ISO (PMID:18305173) UniProtKB PMID:18305173 NCBI chr12:2,151,409...2,164,564 JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:20,131,658...20,157,532
Ensembl chr26:19,933,281...20,157,058
JBrowse link
G HPS6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:14,614,434...14,617,138
Ensembl chr28:14,614,584...14,653,629
JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 ISO PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr12:12,658,415...12,664,945
Ensembl chr12:12,660,008...12,664,940
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO PMID:18644871 RGD
ParkinsonsUK-UCL
PMID:9038169, PMID:18644871 RGD:10059368, RGD:10412301 NCBI chr 5:11,292,219...11,296,851
Ensembl chr 5:11,292,262...11,296,797
JBrowse link
G ITFG2 integrin alpha FG-GAP repeat containing 2 IEA Ensembl GO_REF:0000107 NCBI chr27:41,933,741...41,944,464
Ensembl chr27:41,934,575...41,944,472
JBrowse link
G KXD1 KxDL motif containing 1 IEA UniProt GO_REF:0000044 NCBI chr20:44,480,634...44,489,287
Ensembl chr20:44,481,557...44,489,188
JBrowse link
G LAMP1 lysosomal associated membrane protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:60,678,116...60,695,619
Ensembl chr22:60,678,111...60,694,924
JBrowse link
G LAMP2 lysosomal associated membrane protein 2 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr  X:92,405,946...92,444,527
Ensembl chr  X:92,407,950...92,444,765
JBrowse link
G LAMP3 lysosomal associated membrane protein 3 IEA UniProt GO_REF:0000044 NCBI chr34:16,092,172...16,126,563 JBrowse link
G LAMP5 lysosomal associated membrane protein family member 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:12,678,209...12,693,847
Ensembl chr24:12,678,837...12,694,284
JBrowse link
G LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 IEA UniProt GO_REF:0000044 NCBI chr21:25,981,170...25,986,942
Ensembl chr21:25,981,254...25,996,432
JBrowse link
G LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 IEA UniProt GO_REF:0000044 NCBI chr 7:41,760,632...41,764,926
Ensembl chr 7:41,760,638...41,763,299
JBrowse link
G LAPTM4A lysosomal protein transmembrane 4 alpha IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:15,066,326...15,081,562
Ensembl chr17:15,066,885...15,080,752
JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:41,134...127,399
Ensembl chr13:41,121...127,182
JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:70,188,382...70,215,361
Ensembl chr 2:70,152,739...70,333,073
JBrowse link
G LITAF lipopolysaccharide induced TNF factor ISO (PMID:11274176) MGI PMID:11274176 NCBI chr 6:31,229,153...31,259,670 JBrowse link
G LITAFD LITAF domain containing IEA UniProt GO_REF:0000044 Ensembl chr 6:33,319,407...33,319,822 JBrowse link
G LOC100855763 transient receptor potential cation channel subfamily M member 2 ISO (MGI:MGI:5298324|PMID:21753080) UniProtKB PMID:21753080 MGI:MGI:5298324 NCBI chr31:38,220,507...38,250,683 JBrowse link
G LOC612591 uncharacterized LOC612591 ISO (MGI:MGI:2387737|PMID:12133826) MGI PMID:12133826 MGI:MGI:2387737 NCBI chr11:68,755,586...68,760,863 JBrowse link
G MARCHF1 membrane associated ring-CH-type finger 1 ISO (MGI:MGI:4430128|PMID:19880452) UniProtKB PMID:19880452 MGI:MGI:4430128 NCBI chr15:59,753,597...60,279,692
Ensembl chr15:59,753,216...60,036,060
JBrowse link
G MCOLN1 mucolipin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:52,318,411...52,327,389
Ensembl chr20:52,318,408...52,348,963
JBrowse link
G MCOLN3 mucolipin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:62,923,598...62,953,696
Ensembl chr 6:62,923,267...62,953,564
JBrowse link
G MEAK7 MTOR associated protein, eak-7 homolog IEA Ensembl GO_REF:0000107 NCBI chr 5:67,958,596...67,976,945
Ensembl chr 5:67,962,242...67,975,264
JBrowse link
G MIOS meiosis regulator for oocyte development IEA Ensembl GO_REF:0000107 NCBI chr14:23,171,028...23,208,055
Ensembl chr14:23,171,050...23,555,257
JBrowse link
G MTOR mechanistic target of rapamycin kinase IEA Ensembl GO_REF:0000107 NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114
JBrowse link
G MYO7A myosin VIIA IEA Ensembl GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G NCSTN nicastrin ISO RGD PMID:12736250 RGD:724403 NCBI chr38:21,878,071...21,891,362
Ensembl chr38:21,685,868...21,892,097
JBrowse link
G NEU3 neuraminidase 3 ISO (PMID:26251452) UniProt PMID:26251452 NCBI chr21:23,456,424...23,484,872 JBrowse link
G NPRL2 NPR2 like, GATOR1 complex subunit IEA Ensembl GO_REF:0000107 NCBI chr20:39,005,699...39,009,183
Ensembl chr20:39,005,734...39,009,189
JBrowse link
G NPRL3 NPR3 like, GATOR1 complex subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:40,351,757...40,394,599
Ensembl chr 6:40,352,477...40,390,489
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein IEA Ensembl GO_REF:0000107 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
JBrowse link
G OCLN occludin IEA Ensembl GO_REF:0000107 NCBI chr 2:54,500,299...54,545,430
Ensembl chr 2:54,500,299...54,545,430
JBrowse link
G OSGEP O-sialoglycoprotein endopeptidase IEA UniProt GO_REF:0000044 NCBI chr15:17,780,474...17,786,452
Ensembl chr15:17,780,476...17,811,173
JBrowse link
G PIP4P1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 ISO (MGI:MGI:6304515|PMID:29644770)
(PMID:16365287), (PMID:29146937)
UniProt
FlyBase
PMID:16365287, PMID:29146937, PMID:29644770 MGI:MGI:6304515 NCBI chr15:17,789,511...17,793,226 JBrowse link
G PIP4P2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 IEA UniProt GO_REF:0000044 NCBI chr29:36,376,211...36,410,680
Ensembl chr29:36,377,413...36,419,132
JBrowse link
G PLA2G4E phospholipase A2 group IVE IEA Ensembl GO_REF:0000107 NCBI chr30:9,018,238...9,077,258
Ensembl chr30:9,020,079...9,075,999
JBrowse link
G PLD3 phospholipase D family member 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:113,305,146...113,322,705
Ensembl chr 1:113,305,445...113,312,632
JBrowse link
G PSEN1 presenilin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G PSEN2 presenilin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722
JBrowse link
G RAB12 RAB12, member RAS oncogene family IEA UniProt GO_REF:0000044 NCBI chr 7:74,752,697...74,791,872 JBrowse link
G RNF13 ring finger protein 13 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:44,480,595...44,683,114
Ensembl chr23:44,529,389...44,682,111
JBrowse link
G RNF152 ring finger protein 152 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:14,914,508...15,001,843
Ensembl chr 1:14,985,769...14,986,380
JBrowse link
G RNF183 ring finger protein 183 ISO (MGI:MGI:6113025|PMID:29300766) UniProt PMID:29300766 MGI:MGI:6113025 NCBI chr11:67,660,593...67,669,633 JBrowse link
G SCARB2 scavenger receptor class B member 2 IEA Ensembl GO_REF:0000107 NCBI chr32:788,117...865,496
Ensembl chr32:790,379...865,502
JBrowse link
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component IEA UniProt GO_REF:0000044 NCBI chr20:8,041,485...8,075,078
Ensembl chr20:8,041,544...8,075,076
JBrowse link
G SEH1L SEH1 like nucleoporin IEA UniProt GO_REF:0000044 NCBI chr 7:78,352,153...78,383,546
Ensembl chr 7:78,351,992...78,541,669
JBrowse link
G SIDT2 SID1 transmembrane family member 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:16,397,532...16,410,827
Ensembl chr 5:16,398,815...16,411,268
JBrowse link
G SLC11A2 solute carrier family 11 member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:3,788,785...3,823,852
Ensembl chr27:3,787,855...3,822,672
JBrowse link
G SLC15A3 solute carrier family 15 member 3 ISO (MGI:MGI:5571205|PMID:24695226) RGD
UniProt
PMID:11336635, PMID:24695226 MGI:MGI:5571205, RGD:633591 NCBI chr18:55,354,987...55,363,672 JBrowse link
G SLC15A4 solute carrier family 15 member 4 ISO (MGI:MGI:5571205|PMID:24695226) UniProt PMID:24695226 MGI:MGI:5571205 NCBI chr26:2,803,798...2,832,057
Ensembl chr26:2,802,724...2,831,530
JBrowse link
G SLC17A5 solute carrier family 17 member 5 IEA Ensembl GO_REF:0000107 NCBI chr12:35,648,349...35,683,115
Ensembl chr12:35,649,376...35,683,534
JBrowse link
G SLC26A11 solute carrier family 26 member 11 IEA Ensembl GO_REF:0000107 NCBI chr 9:1,522,836...1,539,889
Ensembl chr 9:1,522,833...1,540,118
JBrowse link
G SLC29A3 solute carrier family 29 member 3 IEA InterPro GO_REF:0000002 NCBI chr 4:22,094,899...22,135,066
Ensembl chr 4:22,097,764...22,133,197
JBrowse link
G SLC2A6 solute carrier family 2 member 6 IEA Ensembl GO_REF:0000107 NCBI chr 9:49,878,325...49,885,549
Ensembl chr 9:49,878,634...49,885,696
JBrowse link
G SLC35F6 solute carrier family 35 member F6 IEA Ensembl GO_REF:0000107 NCBI chr17:20,793,821...20,807,987
Ensembl chr17:20,793,964...20,806,775
JBrowse link
G SLC38A9 solute carrier family 38 member 9 ISO (PMID:30956113) UniProt PMID:30956113 NCBI chr 2:42,921,906...43,004,265
Ensembl chr 2:42,922,494...42,991,577
JBrowse link
G SLC39A14 solute carrier family 39 member 14 IEA Ensembl GO_REF:0000107 NCBI chr25:34,854,371...34,901,030
Ensembl chr25:34,846,653...34,869,695
JBrowse link
G SLC39A8 solute carrier family 39 member 8 IEA Ensembl GO_REF:0000107 NCBI chr32:23,727,920...23,801,459
Ensembl chr32:23,729,476...23,800,941
JBrowse link
G SLC48A1 solute carrier family 48 member 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:6,970,510...6,978,837
Ensembl chr27:6,971,402...6,978,942
JBrowse link
G SLC66A1 solute carrier family 66 member 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:79,318,200...79,334,047
Ensembl chr 2:79,318,345...79,320,885
JBrowse link
G SPAG9 sperm associated antigen 9 IEA Ensembl GO_REF:0000107 NCBI chr 9:26,820,381...26,966,315
Ensembl chr 9:26,820,002...26,966,300
JBrowse link
G SPPL2A signal peptide peptidase like 2A IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr30:16,593,834...16,638,435
Ensembl chr30:16,596,967...16,745,608
JBrowse link
G SPPL2B signal peptide peptidase like 2B IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr20:56,714,306...56,730,388
Ensembl chr20:56,712,390...56,757,938
JBrowse link
G SPPL2C signal peptide peptidase like 2C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:9,703,119...9,705,300
Ensembl chr 9:9,703,230...9,705,212
JBrowse link
G STX17 syntaxin 17 NOT ISO (PMID:10930465) UniProtKB PMID:10930465 NCBI chr11:56,885,874...56,951,714
Ensembl chr11:56,885,174...56,945,767
JBrowse link
G STX7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 1:25,544,283...25,607,179
Ensembl chr 1:25,546,596...25,607,231
JBrowse link
G STX8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 5:33,834,218...34,091,827
Ensembl chr 5:33,834,279...34,091,757
JBrowse link
G SZT2 SZT2 subunit of KICSTOR complex IEA Ensembl GO_REF:0000107 NCBI chr15:16,729,068...16,780,549
Ensembl chr15:16,728,758...16,780,325
JBrowse link
G TECPR1 tectonin beta-propeller repeat containing 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 6:11,086,498...11,112,236
Ensembl chr 6:11,086,423...11,112,241
JBrowse link
G TFEB transcription factor EB ISO (PMID:22343943), (PMID:22692423) UniProt PMID:22343943, PMID:22692423 NCBI chr12:10,367,979...10,423,478
Ensembl chr12:10,368,599...10,452,619
JBrowse link
G TM4SF5 transmembrane 4 L six family member 5 IEA Ensembl GO_REF:0000107 NCBI chr 5:31,788,528...31,796,013
Ensembl chr 5:31,788,528...31,795,956
JBrowse link
G TM6SF1 transmembrane 6 superfamily member 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:54,852,885...54,933,714
Ensembl chr 3:54,874,894...54,902,805
JBrowse link
G TMBIM1 transmembrane BAX inhibitor motif containing 1 ISO (PMID:16607040) UniProtKB PMID:16607040 NCBI chr37:24,952,145...24,983,477
Ensembl chr37:24,952,902...24,958,137
JBrowse link
G TMEM106B transmembrane protein 106B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:27,140,692...27,166,652
Ensembl chr14:27,140,687...27,161,333
JBrowse link
G TMEM165 transmembrane protein 165 IEA Ensembl GO_REF:0000107 NCBI chr13:47,658,408...47,683,519
Ensembl chr13:47,658,330...47,682,866
JBrowse link
G TMEM192 transmembrane protein 192 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr15:61,088,944...61,110,426
Ensembl chr15:61,090,399...61,110,762
JBrowse link
G TMEM63A transmembrane protein 63A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,936,989...38,964,349
Ensembl chr 7:38,937,041...38,964,345
JBrowse link
G TMEM79 transmembrane protein 79 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:41,591,332...41,597,993
Ensembl chr 7:41,591,848...41,595,816
JBrowse link
G TMEM9 transmembrane protein 9 ISO (PMID:30374053) UniProt PMID:30374053 NCBI chr 7:2,069,017...2,087,961 JBrowse link
G TPCN1 two pore segment channel 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:10,599,898...10,662,269
Ensembl chr26:10,599,780...10,660,767
JBrowse link
G TPCN2 two pore segment channel 2 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr18:48,956,833...48,984,499
Ensembl chr18:48,957,249...48,984,564
JBrowse link
G TRIM23 tripartite motif containing 23 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:51,323,341...51,360,193
Ensembl chr 2:51,325,038...51,360,117
JBrowse link
G UBA1 ubiquitin like modifier activating enzyme 1 colocalizes_with ISO
IEA
(PMID:1376922) UniProtKB
Ensembl
PMID:1376922 GO_REF:0000107 NCBI chr  X:40,784,240...40,807,072
Ensembl chr  X:40,783,809...40,807,069
JBrowse link
G UBXN6 UBX domain protein 6 IEA Ensembl GO_REF:0000107 NCBI chr20:55,228,026...55,246,333
Ensembl chr20:55,227,729...55,245,940
JBrowse link
G VAMP7 vesicle associated membrane protein 7 ISO PMID:10459012 UniProt
RGD
PMID:10459012, PMID:15133481 RGD:4892614, RGD:8554473 NCBI chr  X:123,717,524...123,783,781
Ensembl chr  X:123,717,446...123,783,014
JBrowse link
G VAMP8 vesicle associated membrane protein 8 ISO (PMID:23217709) RGD
UniProtKB
PMID:15133481, PMID:23217709 RGD:4892614 NCBI chr17:39,497,628...39,501,734
Ensembl chr17:39,497,785...39,501,739
JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes IEA UniProt GO_REF:0000044 NCBI chr 5:14,776,975...14,786,736
Ensembl chr 5:14,776,976...14,786,692
JBrowse link
G VPS13A vacuolar protein sorting 13 homolog A IEA Ensembl GO_REF:0000107 NCBI chr 1:81,191,125...81,426,337
Ensembl chr 1:81,192,349...81,426,322
JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes IEA UniProt GO_REF:0000044 NCBI chr24:18,401,440...18,424,605
Ensembl chr24:18,399,572...18,424,510
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes IEA UniProt GO_REF:0000044 NCBI chr26:7,090,669...7,119,913 JBrowse link
G VPS33B VPS33B late endosome and lysosome associated IEA UniProt GO_REF:0000044 NCBI chr 3:53,220,199...53,239,738
Ensembl chr 3:53,220,194...53,239,732
JBrowse link
G VPS39 VPS39 subunit of HOPS complex IEA Ensembl GO_REF:0000107 NCBI chr30:9,166,510...9,213,806
Ensembl chr30:9,166,656...9,213,629
JBrowse link
G VPS41 VPS41 subunit of HOPS complex IEA Ensembl GO_REF:0000107 NCBI chr18:10,788,846...10,956,207
Ensembl chr18:10,788,891...10,955,645
JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B ISO (PMID:18033301), (PMID:23217709) UniProtKB PMID:18033301, PMID:23217709 NCBI chr 8:41,619,365...41,650,389
Ensembl chr29:19,153,616...19,154,245
Ensembl chr 8:19,153,616...19,154,245
JBrowse link
G WDR24 WD repeat domain 24 IEA Ensembl GO_REF:0000107 NCBI chr 6:39,887,968...39,891,633
Ensembl chr 6:39,887,667...39,891,588
JBrowse link
G WDR59 WD repeat domain 59 IEA Ensembl GO_REF:0000107 NCBI chr 5:75,697,828...75,811,323
Ensembl chr 5:75,706,791...75,811,055
JBrowse link
G WDR81 WD repeat domain 81 IEA Ensembl GO_REF:0000107 NCBI chr 9:45,860,200...45,875,439
Ensembl chr 9:45,859,455...45,875,439
JBrowse link
lysosomal proton-transporting V-type ATPase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC106559493 small regulatory polypeptide of amino acid response-like colocalizes_with ISO (PMID:28024296) UniProtKB PMID:28024296 NCBI chr11:52,424,607...52,427,288
Ensembl chr11:52,426,076...52,426,303
JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HRG histidine rich glycoprotein ISO (MGI:MGI:5527134|PMID:23395172) MGI PMID:23395172 MGI:MGI:5527134 NCBI chr34:19,276,487...19,286,540
Ensembl chr34:19,276,549...19,286,537
JBrowse link
G LAMP1 lysosomal associated membrane protein 1 IEA Ensembl GO_REF:0000107 NCBI chr22:60,678,116...60,695,619
Ensembl chr22:60,678,111...60,694,924
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16528
    cellular anatomical entity 16432
      cytoplasm 9811
        vacuole 500
          vacuolar membrane 212
            lytic vacuole membrane 156
              fungal-type vacuole membrane + 0
              lysosomal membrane + 156
Path 2
Term Annotations click to browse term
  cellular_component 16528
    cellular anatomical entity 16432
      organelle 11575
        membrane-bounded organelle 10265
          intracellular membrane-bounded organelle 9590
            vacuole 500
              vacuolar membrane 212
                lytic vacuole membrane 156
                  fungal-type vacuole membrane + 0
                  lysosomal membrane + 156
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.