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ONTOLOGY REPORT - ANNOTATIONS


Term:postsynaptic specialization organization
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Accession:GO:0099084 term browser browse the term
Definition:A process that results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic specialization, a structure that lies adjacent to the cytoplasmic face of the postsynaptic membrane.
Synonyms:exact_synonym: post synaptic specialization organization;   postsynaptic specialization organisation


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gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:1624291
RGD:1600115
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1600115
RGD:1624291
G Nrxn2 neurexin 2 JBrowse link 1 221,792,191 221,908,047 RGD:1600115
RGD:1624291
maintenance of postsynaptic density structure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arf6 ADP-ribosylation factor 6 JBrowse link 6 91,697,109 91,698,257 RGD:8554141
G Dgkz diacylglycerol kinase zeta JBrowse link 3 80,844,002 80,886,487 RGD:1624291
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link 11 72,164,566 72,378,895 RGD:1600115
G Dlg2 discs large MAGUK scaffold protein 2 JBrowse link 1 154,916,274 157,274,077 RGD:1600115
G Dlg3 discs large MAGUK scaffold protein 3 JBrowse link X 70,596,246 70,648,529 RGD:1600115
G Dlg4 discs large MAGUK scaffold protein 4 JBrowse link 10 56,625,845 56,655,543 RGD:1600115
G Dlgap1 DLG associated protein 1 JBrowse link 9 118,277,046 119,159,807 RGD:1600115
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 JBrowse link 4 10,995,241 12,472,423 RGD:1600115
G Mpp2 membrane palmitoylated protein 2 JBrowse link 10 89,998,284 90,030,766 RGD:1600115
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 1 217,149,156 217,593,950 RGD:1600115
RGD:1624291
G Shank3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 7 130,474,278 130,534,679 RGD:1600115
maintenance of postsynaptic specialization structure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cadm1 cell adhesion molecule 1 JBrowse link 8 51,858,906 52,200,591 RGD:1624291
G Git1 GIT ArfGAP 1 JBrowse link 10 62,656,000 62,664,467 RGD:1600115
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:13702189
G Ophn1 oligophrenin 1 JBrowse link X 68,185,865 68,579,518 RGD:13702374
G Syngap1 synaptic Ras GTPase activating protein 1 JBrowse link 20 5,535,434 5,564,657 RGD:1600115
RGD:1624291
negative regulation of postsynaptic density organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cfl1 cofilin 1 JBrowse link 1 220,869,805 220,873,337 RGD:11074527
postsynaptic density assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC103690160 SH3 and multiple ankyrin repeat domains protein 2-like JBrowse link 1 215,208,591 215,246,638 RGD:13792537
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:1624291
G Shank1 SH3 and multiple ankyrin repeat domains 1 JBrowse link 1 100,297,137 100,344,377 RGD:13792537
G Shank2 SH3 and multiple ankyrin repeat domains 2 JBrowse link 1 217,149,156 217,593,950 RGD:13792537
G Shank3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 7 130,474,278 130,534,679 RGD:1624291
RGD:13792537
RGD:1600115
postsynaptic density organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tmem108 transmembrane protein 108 JBrowse link 8 111,968,568 112,265,623 RGD:1624291
RGD:13792537
postsynaptic density protein 95 clustering term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lrrc4 leucine rich repeat containing 4 JBrowse link 4 56,110,658 56,114,254 RGD:1624291
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:8553605
RGD:1624291
RGD:1600115
RGD:8554754
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:1624291
RGD:1600115
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1600115
RGD:1624291
G Nrxn2 neurexin 2 JBrowse link 1 221,792,191 221,908,047 RGD:1600115
RGD:1624291
G Reln reelin JBrowse link 4 9,347,533 9,774,257 RGD:1624291
RGD:1600115
postsynaptic specialization assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1624291
G Nlgn2 neuroligin 2 JBrowse link 10 56,431,586 56,444,847 RGD:1624291
G Nlgn3 neuroligin 3 JBrowse link X 71,199,390 71,227,460 RGD:9831151
G Ntng2 netrin G2 JBrowse link 3 7,742,511 7,800,834 RGD:1624291
regulation of postsynaptic density assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbln1 cerebellin 1 precursor JBrowse link 19 20,607,507 20,611,316 RGD:1624291
G Grid2 glutamate ionotropic receptor delta type subunit 2 JBrowse link 4 94,068,112 95,476,864 RGD:1600115
RGD:1624291
G Il1rap interleukin 1 receptor accessory protein JBrowse link 11 77,456,648 77,593,208 RGD:1624291
RGD:1600115
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 JBrowse link 1 85,290,887 85,308,498 RGD:13702351
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 JBrowse link 1 219,850,037 219,855,771 RGD:13702463
RGD:13792537
G Lrrc4b leucine rich repeat containing 4B JBrowse link 1 100,434,418 100,468,914 RGD:13702321
G LRRTM1 leucine rich repeat transmembrane neuronal 1 JBrowse link 4 108,300,927 108,316,373 RGD:8554788
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 JBrowse link 18 28,012,877 28,017,925 RGD:8554788
G Nptx1 neuronal pentraxin 1 JBrowse link 10 108,682,637 108,691,592 RGD:13702141
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
G Ntrk3 neurotrophic receptor tyrosine kinase 3 JBrowse link 1 139,890,537 140,262,503 RGD:13702219
G Ptprd protein tyrosine phosphatase, receptor type, D JBrowse link 5 92,862,229 93,514,071 RGD:13702141
RGD:1624291
G Ptprs protein tyrosine phosphatase, receptor type, S JBrowse link 9 10,585,360 10,646,205 RGD:1600115
RGD:13702219
RGD:1624291
G Sipa1l1 signal-induced proliferation-associated 1 like 1 JBrowse link 6 106,052,212 106,163,249 RGD:8554032
regulation of postsynaptic density protein 95 clustering term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh2 cadherin 2 JBrowse link 18 8,146,971 8,366,037 RGD:1624291
RGD:1600115
G Cript CXXC repeat containing interactor of PDZ3 domain JBrowse link 6 10,594,147 10,602,103 RGD:8554363
G Dbn1 drebrin 1 JBrowse link 17 9,679,511 9,693,878 RGD:10398728
G Zmynd8 zinc finger, MYND-type containing 8 JBrowse link 3 162,480,766 162,594,145 RGD:8554267
regulation of postsynaptic specialization assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef9 Cdc42 guanine nucleotide exchange factor 9 JBrowse link X 64,249,576 64,428,444 RGD:1624291
G Gap43 growth associated protein 43 JBrowse link 11 58,624,198 58,717,916 RGD:13702431
G Nptxr neuronal pentraxin receptor JBrowse link 7 121,011,678 121,029,754 RGD:1624291
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:1624291
G Numb NUMB, endocytic adaptor protein JBrowse link 6 107,279,917 107,325,345 RGD:2302413

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19676
    cellular process 18449
      cellular component organization or biogenesis 6664
        cellular component organization 6424
          organelle organization 4011
            postsynaptic specialization organization 50
              postsynaptic density organization + 44
              postsynaptic specialization assembly + 28
Path 2
Term Annotations click to browse term
  biological_process 19676
    cellular process 18449
      cellular component organization or biogenesis 6664
        cellular component organization 6424
          cell junction organization 788
            synapse organization 508
              postsynapse organization 217
                postsynaptic specialization organization 50
                  postsynaptic density organization + 44
                  postsynaptic specialization assembly + 28
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.