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ONTOLOGY REPORT - ANNOTATIONS


Term:presynapse organization
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Accession:GO:0099172 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a presynapse.
Synonyms:exact_synonym: presynapse development;   presynapse organisation
 related_synonym: presynapse morphogenesis;   presynapse organization and biogenesis


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presynapse organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C5ar1 complement C5a receptor 1 ISO UniProtKB:P05067 (MGI:MGI:4354701|PMID:19561098) RGD PMID:19561098 MGI:MGI:4354701 NCBI chr 1:78,186,777...78,195,132
Ensembl chr 1:78,186,776...78,195,328
JBrowse link
G Ppfia2 PTPRF interacting protein alpha 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:48,548,932...49,045,852
Ensembl chr 7:48,867,664...49,042,455
JBrowse link
negative regulation of presynapse assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:MGI:6274944|PMID:29643768) RGD PMID:29643768 MGI:MGI:6274944 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
neurexin clustering involved in presynaptic membrane assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 ISO
ISS
(MGI:MGI:2665153|PMID:12796785)
GO_REF:0000024
RGD
BHF-UCL
PMID:12796785 GO_REF:0000024, MGI:MGI:2665153 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
positive regulation of presynaptic active zone assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 IDA PMID:15797875 BHF-UCL PMID:15797875 RGD:8554205 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nrxn1 neurexin 1 TAS PMID:15797875 BHF-UCL PMID:15797875 RGD:8554205 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
presynapse assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cadm1 cell adhesion molecule 1 ISO (MGI:MGI:2385986|PMID:12202822) RGD PMID:12202822 MGI:MGI:2385986 NCBI chr 8:51,858,906...52,200,591
Ensembl chr 8:52,127,399...52,189,722
JBrowse link
G Cntn5 contactin 5 IEA
ISO
GO_REF:0000107
(MGI:MGI:5635777|PMID:24411736)
Ensembl
RGD
PMID:24411736 GO_REF:0000107, MGI:MGI:5635777 NCBI chr 8:7,812,371...9,033,962
Ensembl chr 8:7,814,895...8,524,643
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO (MGI:MGI:3653273|PMID:16818724) RGD PMID:16818724 MGI:MGI:3653273 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Efnb1 ephrin B1 IDA
IMP
PMID:19915143 SynGO PMID:19915143, PMID:19915143 RGD:13702172, RGD:13702172 NCBI chr  X:68,891,227...68,904,034
Ensembl chr  X:68,891,227...68,904,038
JBrowse link
G Efnb2 ephrin B2 IDA
IMP
PMID:19915143 SynGO PMID:19915143, PMID:19915143 RGD:13702172, RGD:13702172 NCBI chr16:86,631,151...86,672,050
Ensembl chr16:86,631,064...86,675,049
JBrowse link
G Fzd5 frizzled class receptor 5 EXP
IMP
IDA
PMID:20530549 SynGO PMID:20530549, PMID:20530549, PMID:20530549 RGD:13702329, RGD:13702329, RGD:13702329 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Lrrtm3 leucine rich repeat transmembrane neuronal 3 ISO (PMID:26776509) RGD PMID:26776509 NCBI chr20:25,990,304...26,163,656
Ensembl chr20:25,990,304...26,163,656
JBrowse link
G Nrxn1 neurexin 1 EXP
IMP
IDA
PMID:12796785 SynGO PMID:12796785, PMID:12796785, PMID:12796785 RGD:13702298, RGD:13702298, RGD:13702298 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Sdcbp syndecan binding protein IDA
IMP
PMID:19915143 SynGO PMID:19915143, PMID:19915143 RGD:13702172, RGD:13702172 NCBI chr 5:19,471,664...19,498,499
Ensembl chr 5:19,471,664...19,498,485
JBrowse link
presynaptic actin cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef7 Rho guanine nucleotide exchange factor 7 IDA
IMP
PMID:22114281 SynGO PMID:22114281, PMID:22114281 RGD:13702413, RGD:13702413 NCBI chr16:83,006,732...83,117,065
Ensembl chr16:83,006,718...83,132,785
JBrowse link
G Pls3 plastin 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:119,030,311...119,124,268
Ensembl chr  X:119,030,419...119,124,250
JBrowse link
presynaptic active zone assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsn bassoon (presynaptic cytomatrix protein) IDA
IBA
PMID:22875941
PMID:21873635
UniProt
GO_Central
PMID:22875941, PMID:21873635 RGD:14390063, RGD:13792537 NCBI chr 8:116,873,721...116,965,396
Ensembl chr 8:116,873,721...116,965,396
JBrowse link
G Pcdh17 protocadherin 17 ISO (MGI:MGI:5514320|PMID:23684785) RGD PMID:23684785 MGI:MGI:5514320 NCBI chr15:67,555,835...67,647,990
Ensembl chr15:67,555,835...67,645,088
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) IDA
IBA
PMID:22875941
PMID:21873635
UniProt
GO_Central
PMID:22875941, PMID:21873635 RGD:14390063, RGD:13792537 NCBI chr 4:16,454,904...17,058,921
Ensembl chr 4:16,454,904...17,058,921
JBrowse link
presynaptic membrane assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cel carboxyl ester lipase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Il1rapl1 interleukin 1 receptor accessory protein-like 1 ISO (MGI:MGI:5294265|PMID:21940441) RGD PMID:21940441 MGI:MGI:5294265 NCBI chr  X:55,439,388...57,004,865
Ensembl chr  X:55,439,578...56,765,893
JBrowse link
G Lrp4 LDL receptor related protein 4 ISO
ISS
(MGI:MGI:5295488|PMID:22038977)
GO_REF:0000024
RGD
UniProt
PMID:22038977 GO_REF:0000024, MGI:MGI:5295488 NCBI chr 3:80,362,643...80,416,684
Ensembl chr 3:80,362,858...80,416,679
JBrowse link
G Nlgn1 neuroligin 1 IDA
IBA
ISO
PMID:15797875
PMID:21873635
(MGI:MGI:2665153|PMID:12796785), (MGI:MGI:3694190|PMID:10892652), (MGI:MGI:5284797|PMID:15620359)
PMID:19730411
RGD PMID:10892652, PMID:12796785, PMID:15620359, PMID:15797875, PMID:21873635, PMID:19730411 MGI:MGI:2665153, MGI:MGI:3694190, MGI:MGI:5284797, RGD:8554205, RGD:13792537, RGD:8554379 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IDA
IBA
ISO
IEA
PMID:15797875
PMID:21873635
(MGI:MGI:4352827|PMID:19016888), (MGI:MGI:5284797|PMID:15620359)
GO_REF:0000107
RGD
Ensembl
PMID:15620359, PMID:19016888, PMID:15797875, PMID:21873635 GO_REF:0000107, MGI:MGI:4352827, MGI:MGI:5284797, RGD:8554205, RGD:13792537 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 IDA
IBA
PMID:15797875
PMID:21873635
BHF-UCL
GO_Central
PMID:15797875, PMID:21873635 RGD:8554205, RGD:13792537 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Nrxn1 neurexin 1 ISO
ISS
(MGI:MGI:2665153|PMID:12796785)
GO_REF:0000024
RGD
BHF-UCL
PMID:12796785 GO_REF:0000024, MGI:MGI:2665153 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Pten phosphatase and tensin homolog ISO (MGI:MGI:3772418|PMID:18082964) RGD PMID:18082964 MGI:MGI:3772418 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D ISO (MGI:MGI:5294265|PMID:21940441) RGD PMID:21940441 MGI:MGI:5294265 NCBI chr 5:92,862,229...93,514,071
Ensembl chr 5:92,862,267...93,244,202
JBrowse link
regulation of presynapse assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein ISO (PMID:19726636) RGD PMID:19726636 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Cbln1 cerebellin 1 precursor ISO (MGI:MGI:4441214|PMID:20395510), (MGI:MGI:5294741|PMID:21410790) RGD PMID:20395510, PMID:21410790 MGI:MGI:4441214, MGI:MGI:5294741 NCBI chr19:20,607,507...20,611,316
Ensembl chr19:20,607,507...20,611,316
JBrowse link
G Cbln2 cerebellin 2 precursor ISO (MGI:MGI:5294741|PMID:21410790) RGD PMID:21410790 MGI:MGI:5294741 NCBI chr18:83,775,568...83,783,841
Ensembl chr18:83,777,665...83,782,930
JBrowse link
G Clstn3 calsyntenin 3 IEA
ISO
GO_REF:0000107
(MGI:MGI:5576449|PMID:24613359)
Ensembl
RGD
PMID:24613359 GO_REF:0000107, MGI:MGI:5576449 NCBI chr 4:157,044,736...157,078,013
Ensembl chr 4:157,043,925...157,078,130
JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 ISO UniProtKB:Q21053 (PMID:25533483) RGD PMID:25533483 NCBI chr11:83,907,659...83,927,683
Ensembl chr11:83,908,109...83,926,524
JBrowse link
G Fzd1 frizzled class receptor 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:6189468|PMID:19883499)
Ensembl
RGD
PMID:19883499 GO_REF:0000107, MGI:MGI:6189468 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Gpc4 glypican 4 IDA
IBA
IMP
PMID:23911103
PMID:21873635
SynGO
GO_Central
PMID:23911103, PMID:21873635, PMID:23911103 RGD:13702303, RGD:13792537, RGD:13702303 NCBI chr  X:139,354,325...139,464,876
Ensembl chr  X:139,354,155...139,464,798
JBrowse link
G Gpc6 glypican 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:102,164,091...103,174,721
Ensembl chr15:102,164,751...103,170,847
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 IDA
IMP
PMID:21410790 SynGO PMID:21410790, PMID:21410790 RGD:13702257, RGD:13702257 NCBI chr 4:94,068,112...95,476,864
Ensembl chr 4:94,696,965...95,442,778
JBrowse link
G Il1rap interleukin 1 receptor accessory protein ISO
IEA
(MGI:MGI:5315316|PMID:22357843)
GO_REF:0000107
RGD
Ensembl
PMID:22357843 GO_REF:0000107, MGI:MGI:5315316 NCBI chr11:77,456,648...77,593,208
Ensembl chr11:77,463,954...77,593,207
JBrowse link
G Lrfn3 leucine rich repeat and fibronectin type III domain containing 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:88,819,439...88,827,002
Ensembl chr 1:88,819,445...88,826,302
JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 ISO
IBA
(MGI:MGI:4836132|PMID:20410109)
PMID:21873635
RGD PMID:20410109, PMID:21873635 MGI:MGI:4836132, RGD:13792537 NCBI chr 1:219,850,037...219,855,771
Ensembl chr 1:219,850,037...219,853,329
JBrowse link
G Lrfn5 leucine rich repeat and fibronectin type III domain containing 5 IBA
ISO
PMID:21873635
(MGI:MGI:4836132|PMID:20410109)
RGD PMID:20410109, PMID:21873635 MGI:MGI:4836132, RGD:13792537 NCBI chr 6:83,082,593...83,438,601
Ensembl chr 6:83,083,740...83,438,601
JBrowse link
G Lrrc4b leucine rich repeat containing 4B IDA
IMP
PMID:19252495 SynGO PMID:19252495, PMID:19252495 RGD:13702321, RGD:13702321 NCBI chr 1:100,434,418...100,468,914
Ensembl chr 1:100,447,998...100,468,868
JBrowse link
G LRRTM1 leucine rich repeat transmembrane neuronal 1 IDA
IMP
PMID:19285470 SynGO PMID:19285470, PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr 4:108,300,927...108,316,373
Ensembl chr 4:108,301,129...108,316,373
JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 ISO (MGI:MGI:6109768|PMID:27608760) RGD PMID:27608760 MGI:MGI:6109768 NCBI chr 6:88,442,620...89,292,454
Ensembl chr 6:88,447,749...88,917,070
JBrowse link
G Nlgn2 neuroligin 2 IDA
IMP
PMID:10892652 SynGO PMID:10892652, PMID:10892652 RGD:13702379, RGD:13702379 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nrxn1 neurexin 1 ISO (MGI:MGI:5294741|PMID:21410790), (MGI:MGI:6189347|PMID:17360903) RGD PMID:17360903, PMID:21410790 MGI:MGI:5294741, MGI:MGI:6189347 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Ntng2 netrin G2 ISO (MGI:MGI:3664681|PMID:16980967) RGD PMID:16980967 MGI:MGI:3664681 NCBI chr 3:7,742,511...7,800,834
Ensembl chr 3:7,742,531...7,796,385
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S EXP
IMP
IDA
PMID:21262467 SynGO PMID:21262467, PMID:21262467, PMID:21262467 RGD:13702219, RGD:13702219, RGD:13702219 NCBI chr 9:10,585,360...10,646,205
Ensembl chr 9:10,603,813...10,645,939
JBrowse link
G Slitrk3 SLIT and NTRK-like family, member 3 ISO (PMID:23345436)
(MGI:MGI:5776681|PMID:22286174)
RGD PMID:22286174, PMID:23345436 MGI:MGI:5776681 NCBI chr 2:170,446,582...170,461,513
Ensembl chr 2:170,452,702...170,460,754
JBrowse link
G Slitrk5 SLIT and NTRK-like family, member 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:96,817,907...96,826,760
Ensembl chr15:96,821,832...96,826,653
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Snca synuclein alpha ISO UniProtKB:Q21053 (PMID:25533483) RGD PMID:25533483 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
G Wnt3a Wnt family member 3A ISO (PMID:19883499) RGD PMID:19883499 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wnt7a Wnt family member 7A ISO (PMID:20530549) RGD PMID:20530549 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
regulation of terminal button organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn3 neuroligin 3 ISO
ISS
IEA
(MGI:MGI:5286761|PMID:21808020)
GO_REF:0000024
GO_REF:0000107
RGD
BHF-UCL
Ensembl
PMID:21808020, PMID:21808020 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5286761, RGD:8553412 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:22851330 RGD:13506174 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:22851330 RGD:13506174 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Vps35 VPS35 retromer complex component ISO (PMID:26618722) RGD PMID:26618722 NCBI chr19:27,464,937...27,500,636
Ensembl chr19:27,464,937...27,500,636
JBrowse link
terminal button organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd4 chromodomain helicase DNA binding protein 4 IMP RGD PMID:24991957 RGD:9587770 NCBI chr 4:157,612,531...157,645,660
Ensembl chr 4:157,612,536...157,645,659
JBrowse link
G Nlgn1 neuroligin 1 ISO
IMP
(MGI:MGI:4355770|PMID:19628693) RGD PMID:19628693, PMID:19628693 MGI:MGI:4355770, RGD:8554760 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IMP PMID:18550748 BHF-UCL PMID:18550748 RGD:8554527 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Snapin SNAP-associated protein ISO MGI:MGI:3608768 (MGI:MGI:4430710|PMID:19217378) RGD PMID:19217378 MGI:MGI:4430710 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          presynapse organization 54
            presynapse assembly + 45
            presynaptic cytoskeleton organization + 2
            regulation of presynapse organization + 32
            terminal button organization + 8
Path 2
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          cell junction organization 781
            synapse organization 498
              presynapse organization 54
                presynapse assembly + 45
                presynaptic cytoskeleton organization + 2
                regulation of presynapse organization + 32
                terminal button organization + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.