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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport


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vesicle cytoskeletal trafficking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccdc186 coiled-coil domain containing 186 JBrowse link 1 277,603,601 277,635,379 RGD:1624291
G F8a1 coagulation factor VIII-associated 1 JBrowse link 1 147,021,436 147,022,950 RGD:14697710
RGD:13792537
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kif1a kinesin family member 1A JBrowse link 9 100,171,851 100,253,626 RGD:13514087
G Kif1b kinesin family member 1B JBrowse link 5 165,994,803 166,133,497 RGD:13514087
G Kif1c kinesin family member 1C JBrowse link 10 57,322,259 57,352,395 RGD:13514087
G Sybu syntabulin JBrowse link 7 83,600,614 83,670,121 RGD:13217407
anterograde synaptic vesicle transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap3b1 adaptor related protein complex 3 subunit beta 1 JBrowse link 2 24,022,815 24,227,522 RGD:1624291
RGD:13792537
G Ap3b2 adaptor related protein complex 3 subunit beta 2 JBrowse link 1 143,284,041 143,315,846 RGD:1624291
RGD:13792537
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link 7 11,838,639 11,873,992 RGD:1624291
RGD:13792537
G Ap3m1 adaptor related protein complex 3 subunit mu 1 JBrowse link 15 3,435,998 3,454,281 RGD:1600115
RGD:1624291
G Ap3m2 adaptor related protein complex 3 subunit mu 2 JBrowse link 16 74,075,842 74,091,230 RGD:1600115
RGD:1624291
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 JBrowse link 18 40,732,472 40,798,064 RGD:1624291
G Ap3s2 adaptor related protein complex 3 subunit sigma 2 JBrowse link 1 141,612,961 141,655,417 RGD:1624291
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 JBrowse link 7 3,342,630 3,346,238 RGD:1624291
RGD:1600115
G Bloc1s2 biogenesis of lysosomal organelles complex-1, subunit 2 JBrowse link 1 263,913,901 263,920,989 RGD:1600115
RGD:1624291
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 JBrowse link 1 80,414,766 80,417,385 RGD:1624291
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link 14 79,013,808 79,015,108 RGD:1624291
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 17 26,808,193 26,833,257 RGD:1624291
RGD:1600115
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 3 114,869,478 114,880,218 RGD:1624291
RGD:1600115
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:1624291
RGD:13792537
RGD:1600115
G Madd MAP-kinase activating death domain JBrowse link 3 79,960,301 80,003,023 RGD:1624291
G Snapin SNAP-associated protein JBrowse link 2 189,878,159 189,880,743 RGD:1624291
RGD:1600115
G Trim46 tripartite motif-containing 46 JBrowse link 2 188,548,608 188,561,617 RGD:1624291
dense core granule cytoskeletal transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kif1a kinesin family member 1A JBrowse link 9 100,171,851 100,253,626 RGD:14995321
RGD:15023486
G Ppfia2 PTPRF interacting protein alpha 2 JBrowse link 7 48,548,932 49,045,852 RGD:1624291
G Syt4 synaptotagmin 4 JBrowse link 18 24,172,580 24,181,989 RGD:15023486
RGD:1624291
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 JBrowse link 10 93,811,350 94,132,418 RGD:14995321
minus-end-directed vesicle transport along microtubule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 JBrowse link 6 134,958,854 135,085,769 RGD:13792537
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 JBrowse link 1 220,474,485 220,480,723 RGD:10400859
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link 8 132,844,042 132,910,905 RGD:1624291
RGD:13792537
G Kif13a kinesin family member 13A JBrowse link 17 18,151,582 18,335,027 RGD:1624291
G Kif23 kinesin family member 23 JBrowse link 8 66,866,043 66,893,241 RGD:1600115
G Kif5b kinesin family member 5B JBrowse link 17 54,181,416 54,219,048 RGD:1624291
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Map2 microtubule-associated protein 2 JBrowse link 9 73,204,753 73,462,965 RGD:13514087
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:12790715
G Trim46 tripartite motif-containing 46 JBrowse link 2 188,548,608 188,561,617 RGD:13514087
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Borcs5 BLOC-1 related complex subunit 5 JBrowse link 4 168,396,034 168,466,968 RGD:13792537
G Map2 microtubule-associated protein 2 JBrowse link 9 73,204,753 73,462,965 RGD:13514087
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:12790715
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stk11 serine/threonine kinase 11 JBrowse link 7 12,440,751 12,457,513 RGD:1624291
RGD:30309925
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kif1a kinesin family member 1A JBrowse link 9 100,171,851 100,253,626 RGD:13514087
G Kif1b kinesin family member 1B JBrowse link 5 165,994,803 166,133,497 RGD:13514087
G Kif1c kinesin family member 1C JBrowse link 10 57,322,259 57,352,395 RGD:13514087
G Kif5a kinesin family member 5A JBrowse link 7 70,515,832 70,552,897 RGD:13514087
G Kif5b kinesin family member 5B JBrowse link 17 54,181,416 54,219,048 RGD:13514087
vesicle transport along actin filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07036550.1 RGD:13792537
G Actn4 actinin alpha 4 JBrowse link 1 87,078,012 87,147,347 RGD:1624291
G Fnbp1l formin binding protein 1-like JBrowse link 2 226,691,435 226,742,081 RGD:1624291
G Myo15a myosin XVA JBrowse link 10 46,840,098 46,897,362 RGD:13792537
G Myo19 myosin XIX JBrowse link 10 72,198,475 72,227,892 RGD:13792537
G Myo1a myosin IA JBrowse link 7 71,000,299 71,019,386 RGD:13792537
G Myo1b myosin Ib JBrowse link 9 54,706,005 54,766,054 RGD:13792537
G Myo1c myosin 1C JBrowse link 10 63,803,311 63,819,614 RGD:1624291
RGD:13792537
G Myo1d myosin ID JBrowse link 10 67,866,939 68,142,864 RGD:13792537
G Myo1e myosin IE JBrowse link 8 76,644,715 76,840,240 RGD:13792537
G Myo1f myosin IF JBrowse link 7 18,440,742 18,491,448 RGD:13792537
G Myo1g myosin IG JBrowse link 14 86,781,243 86,796,393 RGD:13792537
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1600832
RGD:13792537
RGD:1600115
RGD:1624291
RGD:2306437
G Myo5b myosin Vb JBrowse link 18 70,426,865 70,729,985 RGD:13792537
G Myo5c myosin VC JBrowse link 8 82,171,296 82,248,109 RGD:13792537
G Myo6 myosin VI JBrowse link 8 87,583,649 87,731,271 RGD:13792537
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:13792537
G Myo7b myosin VIIb JBrowse link 18 24,742,329 24,823,889 RGD:13792537
G Wasl WASP like actin nucleation promoting factor JBrowse link 4 51,677,722 51,726,212 RGD:8554834
vesicle transport along microtubule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bicdl1 BICD family like cargo adaptor 1 JBrowse link 12 46,615,597 46,703,287 RGD:13792537
G Bicdl2 BICD family like cargo adaptor 2 JBrowse link 10 12,980,696 12,989,133 RGD:13792537
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 JBrowse link 4 30,807,755 31,121,097 RGD:8553555
RGD:1624291
RGD:1600115
G Fbxw11 F-box and WD repeat domain containing 11 JBrowse link 10 17,542,374 17,640,718 RGD:13792537
G Hap1 huntingtin-associated protein 1 JBrowse link 10 88,257,975 88,266,210 RGD:1624291
RGD:13792537
RGD:1600115
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1624291
RGD:1600115
G Kif5b kinesin family member 5B JBrowse link 17 54,181,416 54,219,048 RGD:8553555
RGD:1624291
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:2293208
G Nde1 nudE neurodevelopment protein 1 JBrowse link 10 860,513 904,624 RGD:1624291
RGD:13792537
G Ndel1 nudE neurodevelopment protein 1-like 1 JBrowse link 10 55,398,919 55,456,654 RGD:1624291
RGD:13792537
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 JBrowse link 10 61,456,144 61,577,412 RGD:1624291
RGD:13792537
G Prkcz protein kinase C, zeta JBrowse link 5 172,658,071 172,769,492 RGD:1642664
G Rab1a RAB1A, member RAS oncogene family JBrowse link 14 104,475,082 104,500,176 RGD:8554665
RGD:1624291
G Rasgrp1 RAS guanyl releasing protein 1 JBrowse link 3 108,984,029 109,044,420 RGD:1624291
G Trak1 trafficking kinesin protein 1 JBrowse link 8 129,946,596 130,106,382 RGD:13792537
G Trak2 trafficking kinesin protein 2 JBrowse link 9 65,698,706 65,763,351 RGD:13792537
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:10047362

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    localization 6457
      cellular localization 2931
        intracellular transport 1505
          cytoskeleton-dependent intracellular transport 199
            vesicle cytoskeletal trafficking 73
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 20
              vesicle transport along actin filament + 19
              vesicle transport along microtubule + 49
Path 2
Term Annotations click to browse term
  biological_process 19858
    localization 6457
      establishment of localization 4907
        transport 4764
          intracellular transport 1505
            cytoskeleton-dependent intracellular transport 199
              vesicle cytoskeletal trafficking 73
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 20
                vesicle transport along actin filament + 19
                vesicle transport along microtubule + 49
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.