Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:synapse-associated extracellular matrix
go back to main search page
Accession:GO:0099535 term browser browse the term
Definition:The extracellular matrix of the perisynaptic space (the extracellular space adjacent to the synapse) and the synaptic cleft.
Synonyms:exact_synonym: extra-synaptic extracellular matrix


show annotations for term's descendants           Sort by:
 
extracellular matrix of synaptic cleft term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sparcl1 SPARC like 1 IDA PMID:17151913 SynGO PMID:17151913 RGD:13702411 NCBI chr14:6,994,261...7,025,309
Ensembl chr14:6,994,190...7,025,308
JBrowse link
perineuronal net term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IDA RGD PMID:18364019 RGD:2315810 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Bcan brevican IDA MMO:0000669 RGD PMID:16644727 RGD:9589827 NCBI chr 2:187,359,674...187,373,133
Ensembl chr 2:187,359,677...187,372,657
JBrowse link
G Ncan neurocan IDA MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chr16:21,050,243...21,076,707
Ensembl chr16:21,050,243...21,076,707
JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 ISO
IEA
IDA
(MGI:MGI:1858374|PMID:10793198)
GO_REF:0000107
RGD
Ensembl
PMID:10793198, PMID:16644727 GO_REF:0000107, MGI:MGI:1858374, RGD:9589827 NCBI chr 4:49,941,046...50,140,764
Ensembl chr 4:49,941,304...50,140,762
JBrowse link
G Tnr tenascin R ISO
IEA
(MGI:MGI:1337730|PMID:10341229)
GO_REF:0000107
RGD
Ensembl
PMID:10341229 GO_REF:0000107, MGI:MGI:1337730 NCBI chr13:77,602,249...77,678,385
Ensembl chr13:77,485,113...77,678,437
JBrowse link
G Vcan versican IDA MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chr 2:18,490,102...18,587,340
Ensembl chr 2:18,490,102...18,565,842
JBrowse link
perisynaptic extracellular matrix term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan ISO (MGI:MGI:6189263|PMID:27615741) RGD PMID:27615741 MGI:MGI:6189263 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Bcan brevican IDA PMID:10414531 SynGO PMID:10414531 RGD:13702202 NCBI chr 2:187,359,674...187,373,133
Ensembl chr 2:187,359,677...187,372,657
JBrowse link
G Tnc tenascin C ISO (MGI:MGI:6189245|PMID:16452087) RGD PMID:16452087 MGI:MGI:6189245 NCBI chr 5:79,789,686...79,874,555
Ensembl chr 5:79,789,671...79,874,671
JBrowse link
G Tnr tenascin R IDA PMID:11598921 SynGO PMID:11598921 RGD:13702357 NCBI chr13:77,602,249...77,678,385
Ensembl chr13:77,485,113...77,678,437
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      extracellular matrix 426
        collagen-containing extracellular matrix 251
          synapse-associated extracellular matrix 8
            extracellular matrix of synaptic cleft 1
            perisynaptic extracellular matrix + 7
Path 2
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      extracellular region 2601
        extracellular matrix 426
          collagen-containing extracellular matrix 251
            synapse-associated extracellular matrix 8
              extracellular matrix of synaptic cleft 1
              perisynaptic extracellular matrix + 7
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.