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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA decapping
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Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


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deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07066144.1 RGD:13792537
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:13792537
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:13792537
G Dcps decapping enzyme, scavenger JBrowse link 8 36,321,992 36,374,665 RGD:13792537
RGD:1600115
G LOC100909830 mRNA-decapping enzyme 2-like JBrowse link 18 78,577,303 78,610,463 RGD:13792537
G LOC100912393 mRNA-decapping enzyme 2-like JBrowse link 9 3,940,948 3,965,964 RGD:13792537
G LOC103690064 m7GpppN-mRNA hydrolase-like JBrowse link 18 35,849,655 35,883,568 RGD:13792537
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:13792537
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:1624291
RGD:13792537
G Patl1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 1 228,337,756 228,369,719 RGD:1600115
RGD:13792537
RGD:1624291
G Patl2 PAT1 homolog 2 JBrowse link 3 114,065,814 114,075,404 RGD:13792537
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:13792537
G Edc3 enhancer of mRNA decapping 3 JBrowse link 8 62,482,126 62,527,665 RGD:13792537
G Edc4 enhancer of mRNA decapping 4 JBrowse link 19 37,852,659 37,864,651 RGD:13792537
NAD-cap decapping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:1624291
RGD:13792537
RGD:1600115
G Nudt12 nudix hydrolase 12 JBrowse link 9 105,680,603 105,693,374 RGD:1624291
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      organic substance metabolic process 11359
        macromolecule metabolic process 9815
          nucleic acid metabolic process 4822
            RNA metabolic process 4322
              RNA decapping 19
                NAD-cap decapping 2
                methylguanosine-cap decapping + 17
Path 2
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      cellular metabolic process 10782
        cellular aromatic compound metabolic process 5534
          nucleobase-containing compound metabolic process 5311
            nucleic acid metabolic process 4822
              RNA metabolic process 4322
                RNA decapping 19
                  NAD-cap decapping 2
                  methylguanosine-cap decapping + 17
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.