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ONTOLOGY REPORT - ANNOTATIONS


Term:neuron projection cytoplasm
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Accession:GO:0120111 term browser browse the term
Definition:All of the contents of a plasma membrane bounded neuron projection, excluding the plasma membrane surrounding the projection.


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axon cytoplasm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr10 actin related protein 10 JBrowse link 6 93,385,457 93,411,605 RGD:1600115
G Agbl4 ATP/GTP binding protein-like 4 JBrowse link 5
5
130,742,297
130,286,393
131,656,581
130,305,884
RGD:1600115
G Agtpbp1 ATP/GTP binding protein 1 JBrowse link 17 5,510,009 5,614,416 RGD:1600115
G Ap3b1 adaptor related protein complex 3 subunit beta 1 JBrowse link 2 24,022,815 24,227,522 RGD:1600115
G Ap3b2 adaptor related protein complex 3 subunit beta 2 JBrowse link 1 143,284,041 143,315,846 RGD:1600115
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link 7 11,838,639 11,873,992 RGD:1600115
G Ap3m1 adaptor related protein complex 3 subunit mu 1 JBrowse link 15 3,435,998 3,454,281 RGD:1600115
G Ap3m2 adaptor related protein complex 3 subunit mu 2 JBrowse link 16 74,075,842 74,091,230 RGD:1600115
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 JBrowse link 18 40,732,472 40,798,064 RGD:1600115
G Ap3s2 adaptor related protein complex 3 subunit sigma 2 JBrowse link 1 141,612,961 141,655,417 RGD:1600115
G Arl8a ADP-ribosylation factor like GTPase 8A JBrowse link 13 51,972,974 51,981,976 RGD:1600115
G Arl8b ADP-ribosylation factor like GTPase 8B JBrowse link 4 140,837,745 140,881,866 RGD:1600115
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 JBrowse link 7 3,342,630 3,346,238 RGD:1600115
G Bloc1s2 biogenesis of lysosomal organelles complex-1, subunit 2 JBrowse link 1 263,913,901 263,920,989 RGD:1600115
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 JBrowse link 1 80,414,766 80,417,385 RGD:1600115
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link 14 79,013,808 79,015,108 RGD:1600115
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 17 26,808,193 26,833,257 RGD:1600115
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 3 114,869,478 114,880,218 RGD:1600115
G Bsn bassoon (presynaptic cytomatrix protein) JBrowse link 8 116,873,721 116,965,396 RGD:12793047
G Cacna1c calcium voltage-gated channel subunit alpha1 C JBrowse link 4 150,635,808 151,270,790 RGD:1624291
G Caly calcyon neuron-specific vesicular protein JBrowse link 1 212,537,851 212,549,040 RGD:1600115
G Dlg2 discs large MAGUK scaffold protein 2 JBrowse link 1 154,916,274 157,274,077 RGD:1600115
G Dst dystonin JBrowse link 9 37,902,336 38,296,961 RGD:1600115
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:1600115
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 JBrowse link 6 134,958,854 135,085,769 RGD:1600115
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 JBrowse link 4 30,807,755 31,121,097 RGD:12793047
G Dynll1 dynein light chain LC8-type 1 JBrowse link 12 47,074,200 47,076,573 RGD:13207432
G Dynlrb1 dynein light chain roadblock-type 1 JBrowse link 3 150,761,329 150,782,493 RGD:1600115
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
G Hap1 huntingtin-associated protein 1 JBrowse link 10 88,257,975 88,266,210 RGD:1600115
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1600115
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1600115
G Hspb1 heat shock protein family B (small) member 1 JBrowse link 12 23,839,390 23,841,051 RGD:1600115
G Kif1a kinesin family member 1A JBrowse link 9 100,171,851 100,253,626 RGD:1600115
G Kif1b kinesin family member 1B JBrowse link 5 165,994,803 166,133,497 RGD:1600115
G Kif1c kinesin family member 1C JBrowse link 10 57,322,259 57,352,395 RGD:1600115
G Kif3a kinesin family member 3a JBrowse link 10 38,918,705 38,953,958 RGD:11049593
G Kif5a kinesin family member 5A JBrowse link 7 70,515,832 70,552,897 RGD:1600115
G Kif5b kinesin family member 5B JBrowse link 17 54,181,416 54,219,048 RGD:1600115
G Kif5c kinesin family member 5C JBrowse link 3 35,014,157 35,257,417 RGD:1600115
G LOC108348065 histone deacetylase 6 JBrowse link X 15,396,185 15,417,486 RGD:1600115
G Madd MAP-kinase activating death domain JBrowse link 3 79,960,301 80,003,023 RGD:1600115
G Map1a microtubule-associated protein 1A JBrowse link 3 113,251,918 113,272,193 RGD:1600115
G Map6 microtubule-associated protein 6 JBrowse link 1 164,225,776 164,292,094 RGD:1600115
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 JBrowse link 10 14,259,394 14,299,276 RGD:1600115
G Mgarp mitochondria-localized glutamic acid-rich protein JBrowse link 2 140,444,963 140,453,719 RGD:1600115
G Ndel1 nudE neurodevelopment protein 1-like 1 JBrowse link 10 55,398,919 55,456,654 RGD:1600115
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:1600115
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 JBrowse link 10 61,456,144 61,577,412 RGD:1600115
G Rab21 RAB21, member RAS oncogene family JBrowse link 7 58,261,985 58,286,770 RGD:1600115
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:1600115
G Ranbp1 RAN binding protein 1 JBrowse link 11 86,890,585 86,898,818 RGD:9835000
G Rangap1 RAN GTPase activating protein 1 JBrowse link 7 122,939,266 122,967,178 RGD:9835000
G Snapin SNAP-associated protein JBrowse link 2 189,878,159 189,880,743 RGD:1600115
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:1600115
G Spast spastin JBrowse link 6 22,230,067 22,282,166 RGD:1600115
G Spg7 SPG7 matrix AAA peptidase subunit, paraplegin JBrowse link 19 55,880,549 55,914,729 RGD:1600115
G Sybu syntabulin JBrowse link 7 83,600,614 83,670,121 RGD:1600115
G Terf2 telomeric repeat binding factor 2 JBrowse link 19 39,271,992 39,301,506 RGD:1600115
G Tmem108 transmembrane protein 108 JBrowse link 8 111,968,568 112,265,623 RGD:1600115
G Trak1 trafficking kinesin protein 1 JBrowse link 8 129,946,596 130,106,382 RGD:1600115
G Trak2 trafficking kinesin protein 2 JBrowse link 9 65,698,706 65,763,351 RGD:1600115
G Trim46 tripartite motif-containing 46 JBrowse link 2 188,548,608 188,561,617 RGD:1600115
G Uchl1 ubiquitin C-terminal hydrolase L1 JBrowse link 14 43,133,224 43,143,942 RGD:1600115
G Zc3h14 zinc finger CCCH type containing 14 JBrowse link 6 122,729,834 122,767,462 RGD:1624291
dendrite cytoplasm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abhd12 abhydrolase domain containing 12, lysophospholipase JBrowse link 3 146,630,298 146,690,375 RGD:1624291
G Abhd13 abhydrolase domain containing 13 JBrowse link 16 85,315,275 85,330,108 RGD:1624291
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:2291858
G Camk2a calcium/calmodulin-dependent protein kinase II alpha JBrowse link 18 56,193,978 56,295,869 RGD:68238
G Canx calnexin JBrowse link 10 35,800,942 35,833,939 RGD:2313156
G Cdkl5 cyclin-dependent kinase-like 5 JBrowse link X 35,536,396 35,773,204 RGD:8554575
RGD:13792537
G Dlg4 discs large MAGUK scaffold protein 4 JBrowse link 10 56,625,845 56,655,543 RGD:68238
G Flot2 flotillin 2 JBrowse link 10 65,304,901 65,329,332 RGD:1600115
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:4890439
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 JBrowse link 2 179,584,302 179,704,629 RGD:1642304
G Grik2 glutamate ionotropic receptor kainate type subunit 2 JBrowse link 20 53,791,428 54,517,691 RGD:1642495
G Grik3 glutamate ionotropic receptor kainate type subunit 3 JBrowse link 5 143,500,441 143,715,546 RGD:1642495
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
G Hpca hippocalcin JBrowse link 5 147,295,124 147,305,757 RGD:9686436
G Kcnab1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 JBrowse link 2 155,555,798 156,011,438 RGD:9743934
G Kif17 kinesin family member 17 JBrowse link 5 156,628,409 156,665,752 RGD:1600115
G Kif5a kinesin family member 5A JBrowse link 7 70,515,832 70,552,897 RGD:1600115
G Kif5b kinesin family member 5B JBrowse link 17 54,181,416 54,219,048 RGD:1600115
G Kif5c kinesin family member 5C JBrowse link 3 35,014,157 35,257,417 RGD:1600115
G Klhl17 kelch-like family member 17 JBrowse link 5 173,654,238 173,659,706 RGD:625502
RGD:13792537
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
G Map2 microtubule-associated protein 2 JBrowse link 9 73,204,753 73,462,965 RGD:13514082
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:2293331
G Map2k4 mitogen activated protein kinase kinase 4 JBrowse link 10 52,196,121 52,301,887 RGD:2293331
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:2293331
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:2293331
G Oprm1 opioid receptor, mu 1 JBrowse link 1 43,454,803 43,704,948 RGD:2316627
G Pura purine rich element binding protein A JBrowse link 18 29,104,712 29,114,918 RGD:1600115
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:1600115
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:1624291
RGD:1600115
G Stau1 staufen double-stranded RNA binding protein 1 JBrowse link 3 163,703,204 163,748,996 RGD:1600115
G Stau2 staufen double-stranded RNA binding protein 2 JBrowse link 5 2,257,910 2,497,429 RGD:1600115
G Trak2 trafficking kinesin protein 2 JBrowse link 9 65,698,706 65,763,351 RGD:1600115
G Uhmk1 U2AF homology motif kinase 1 JBrowse link 13 88,521,625 88,536,728 RGD:1624291
G Wasf1 WASP family member 1 JBrowse link 20 48,456,191 48,503,768 RGD:1600115
G Wls Wnt ligand secretion mediator JBrowse link 2 266,315,036 266,431,220 RGD:7488965
G Zc3h14 zinc finger CCCH type containing 14 JBrowse link 6 122,729,834 122,767,462 RGD:1624291
dendritic spine cytoplasm term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baiap2 BAR/IMD domain containing adaptor protein 2 JBrowse link 10 109,107,326 109,187,458 RGD:9684988
neuronal ribonucleoprotein granule term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arc activity-regulated cytoskeleton-associated protein JBrowse link 7 115,907,097 115,911,059 RGD:1624291
G Ckap5 cytoskeleton associated protein 5 JBrowse link 3 80,424,320 80,526,583 RGD:1624291
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:8553560
RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:9685480
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B JBrowse link 10 34,955,713 34,961,662 RGD:9999187
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:6902916
G Kif3c kinesin family member 3C JBrowse link 6 27,768,943 27,815,611 RGD:8553560
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:1624291
RGD:1600115
G Uhmk1 U2AF homology motif kinase 1 JBrowse link 13 88,521,625 88,536,728 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19949
    intracellular 13934
      cytoplasm 10686
        cytoplasmic region 286
          plasma membrane bounded cell projection cytoplasm 230
            neuron projection cytoplasm 104
              axon cytoplasm 65
              dendrite cytoplasm + 38
              neuronal ribonucleoprotein granule 9
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.