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ONTOLOGY REPORT - ANNOTATIONS


Term:mitochondrial gene expression
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Accession:GO:0140053 term browser browse the term
Definition:The process in which a mitochondrial gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.


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mitochondrial gene expression term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cfh complement factor H JBrowse link 13 56,979,155 57,080,540 RGD:1624291
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:1624291
RGD:1600115
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
RGD:1600115
mitochondrial glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:13792537
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tbrg4 transforming growth factor beta regulator 4 JBrowse link 14 86,876,800 86,885,603 RGD:1624291
RGD:1600115
mitochondrial RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
RGD:13792537
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1600115
RGD:13792537
RGD:1624291
mitochondrial RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
mitochondrial RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fastkd5 FAST kinase domains 5 JBrowse link 3 123,154,263 123,170,615 RGD:1624291
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:13792537
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxo3 forkhead box O3 JBrowse link 20 46,428,078 46,519,156 RGD:1624291
G Mrpl12 mitochondrial ribosomal protein L12 JBrowse link 10 109,658,032 109,662,535 RGD:1624291
RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:1624291
G Polrmt RNA polymerase mitochondrial JBrowse link 7 12,840,907 12,851,153 RGD:1624291
RGD:13792537
G Ppargc1b PPARG coactivator 1 beta JBrowse link 18 56,626,725 56,650,524 RGD:1624291
G Slc25a33 solute carrier family 25 member 33 JBrowse link 5 166,701,463 166,726,794 RGD:1624291
G Tefm transcription elongation factor, mitochondrial JBrowse link 10 67,476,006 67,478,830 RGD:1624291
RGD:1600115
G Tfam transcription factor A, mitochondrial JBrowse link 20 18,594,057 18,606,106 RGD:727414
RGD:1624291
RGD:1578536
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:1624291
RGD:13792537
G Twnk twinkle mtDNA helicase JBrowse link 1 264,756,060 264,762,892 RGD:1624291
mitochondrial translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chchd1 coiled-coil-helix-coiled-coil-helix domain containing 1 JBrowse link 15 4,025,455 4,026,637 RGD:1600115
G Gatb glutamyl-tRNA amidotransferase subunit B JBrowse link 2 184,600,695 184,679,980 RGD:1624291
RGD:13792537
G Gatc glutamyl-tRNA amidotransferase subunit C JBrowse link 12 47,031,545 47,039,556 RGD:1624291
RGD:13792537
RGD:1600115
G Gfm2 GTP dependent ribosome recycling factor mitochondrial 2 JBrowse link 2 27,949,195 27,984,045 RGD:1624291
RGD:13792537
RGD:1600115
G Hars1 histidyl-tRNA synthetase 1 JBrowse link 18 29,611,545 29,629,087 RGD:13792537
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial JBrowse link 13 103,229,868 103,265,019 RGD:13792537
G Lars2 leucyl-tRNA synthetase 2, mitochondrial JBrowse link 8 132,441,277 132,537,176 RGD:13792537
G Mrpl16 mitochondrial ribosomal protein L16 JBrowse link 1 228,142,778 228,147,590 RGD:13792537
G Mrpl2 mitochondrial ribosomal protein L2 JBrowse link 9 16,643,621 16,647,394 RGD:13792537
G Mrpl23 mitochondrial ribosomal protein L23 JBrowse link 1 215,701,544 215,709,313 RGD:13792537
G Mrpl43 mitochondrial ribosomal protein L43 JBrowse link 1 264,755,537 264,756,404 RGD:1600115
G Mrpl47 mitochondrial ribosomal protein L47 JBrowse link 2 119,128,311 119,139,451 RGD:13792537
G Mrpl52 mitochondrial ribosomal protein L52 JBrowse link 15 33,069,479 33,072,777 RGD:1600115
G Mrps14 mitochondrial ribosomal protein S14 JBrowse link 13 77,940,454 77,946,201 RGD:1624291
G Mrps18b mitochondrial ribosomal protein S18B JBrowse link 20 3,344,870 3,350,929 RGD:1600115
G Mrps34 mitochondrial ribosomal protein S34 JBrowse link 10 14,257,001 14,258,132 RGD:1624291
RGD:13792537
G Mrps35 mitochondrial ribosomal protein S35 JBrowse link 4 181,434,793 181,465,318 RGD:1600115
G Mrps7 mitochondrial ribosomal protein S7 JBrowse link 10 104,155,805 104,158,840 RGD:1600115
G Noa1 nitric oxide associated 1 JBrowse link 14 33,107,868 33,124,172 RGD:1624291
G Ptcd1 pentatricopeptide repeat domain 1 JBrowse link 12 11,215,795 11,233,633 RGD:1624291
G Ptcd3 Pentatricopeptide repeat domain 3 JBrowse link 4 99,795,646 99,822,960 RGD:1624291
RGD:13792537
G Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 JBrowse link 20 48,855,839 48,881,112 RGD:1624291
RGD:13792537
G Rars2 arginyl-tRNA synthetase 2, mitochondrial JBrowse link 5 50,075,510 50,127,625 RGD:13792537
mitochondrial translational elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfm1 G elongation factor, mitochondrial 1 JBrowse link 2 164,601,575 164,646,478 RGD:1624291
RGD:13792537
RGD:1600115
G Gfm2 GTP dependent ribosome recycling factor mitochondrial 2 JBrowse link 2 27,949,195 27,984,045 RGD:1624291
G Mrpl44 mitochondrial ribosomal protein L44 JBrowse link 9 85,542,763 85,547,814 RGD:1624291
G mt-Tp mitochondrially encoded tRNA proline JBrowse link MT 15,348 15,415 RGD:2317000
G Tsfm Ts translation elongation factor, mitochondrial JBrowse link 7 70,311,948 70,319,389 RGD:13792537
G Tufm Tu translation elongation factor, mitochondrial JBrowse link 1 197,903,582 197,907,189 RGD:13792537
mitochondrial translational initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mtif3 mitochondrial translational initiation factor 3 JBrowse link 12 9,846,355 9,857,548 RGD:1624291
RGD:13792537
mitochondrial translational termination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mrpl58 mitochondrial ribosomal protein L58 JBrowse link 10 103,956,019 103,962,515 RGD:1624291
RGD:13792537
G Mtrf1 mitochondrial translation release factor 1 JBrowse link 15 61,662,000 61,689,867 RGD:13792537
G Mtrf1l mitochondrial translational release factor 1-like JBrowse link 1 42,475,791 42,485,999 RGD:13792537
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link 4 138,855,497 138,869,217 RGD:1624291
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac2 elaC ribonuclease Z 2 JBrowse link 10 51,478,378 51,501,167 RGD:1600115
RGD:13792537
RGD:1624291
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Prorp protein only RNase P catalytic subunit JBrowse link 6 76,079,880 76,171,298 RGD:1624291
RGD:1600115
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:1624291
RGD:13792537
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1624291
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10a tRNA methyltransferase 10A JBrowse link 2 243,422,811 243,437,533 RGD:13792537
G Trmt10b tRNA methyltransferase 10B JBrowse link 5 60,841,517 60,866,480 RGD:13792537
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:13792537
RGD:1600115
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
negative regulation of mitochondrial translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 JBrowse link 4 78,735,279 78,744,102 RGD:1624291
positive regulation of mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 JBrowse link 20 13,665,046 13,666,845 RGD:1624291
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:1624291
G Sirt3 sirtuin 3 JBrowse link 1 213,613,502 213,636,061 RGD:1624291
positive regulation of mitochondrial translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1qbp complement C1q binding protein JBrowse link 10 57,613,876 57,618,527 RGD:1624291
RGD:13792537
RGD:1600115
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1624291
G Coa3 cytochrome C oxidase assembly factor 3 JBrowse link 10 89,198,750 89,199,731 RGD:1624291
G Fastkd2 FAST kinase domains 2 JBrowse link 9 70,448,386 70,471,420 RGD:1600115
RGD:1624291
G Fastkd3 FAST kinase domains 3 JBrowse link 1 37,734,400 37,742,932 RGD:1624291
RGD:1600115
G Mief1 mitochondrial elongation factor 1 JBrowse link 7 121,462,962 121,478,545 RGD:1624291
G Mpv17l2 MPV17 mitochondrial inner membrane protein like 2 JBrowse link 16 20,432,734 20,435,125 RGD:1624291
G Mrps27 mitochondrial ribosomal protein S27 JBrowse link 2 29,598,344 29,666,711 RGD:1624291
G Ngrn neugrin, neurite outgrowth associated JBrowse link 1 142,050,458 142,056,336 RGD:1600115
RGD:1624291
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:1624291
G Rcc1l RCC1 like JBrowse link 12 25,561,871 25,592,337 RGD:1624291
G Rmnd1 required for meiotic nuclear division 1 homolog JBrowse link 1 40,948,843 40,982,669 RGD:1624291
RGD:13792537
G Rpusd3 RNA pseudouridine synthase D3 JBrowse link 4 145,361,937 145,370,992 RGD:1624291
G Rpusd4 RNA pseudouridine synthase D4 JBrowse link 8 36,467,706 36,477,190 RGD:1600115
RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
G Trub2 TruB pseudouridine synthase family member 2 JBrowse link 3 8,338,479 8,348,746 RGD:1600115
RGD:1624291
G Uqcc1 ubiquinol-cytochrome c reductase complex assembly factor 1 JBrowse link 3 151,384,965 151,474,112 RGD:1624291
RGD:13792537
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 JBrowse link 20 5,712,200 5,723,902 RGD:1624291
RGD:1600115
regulation of mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC683897 similar to Protein C6orf203 JBrowse link 20 48,276,101 48,294,975 RGD:1624291
RGD:13792537
G Mettl4 methyltransferase like 4 JBrowse link 9 119,871,519 119,953,248 RGD:1624291
regulation of mitochondrial translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
G Lrpprc leucine-rich pentatricopeptide repeat containing JBrowse link 6 7,984,043 8,066,874 RGD:1624291
G Mtg1 mitochondrial ribosome-associated GTPase 1 JBrowse link 1 212,606,753 212,619,493 RGD:1624291
G Mtg2 mitochondrial ribosome-associated GTPase 2 JBrowse link 3 175,448,214 175,464,109 RGD:1624291
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:1624291
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1624291
G Taco1 translational activator of cytochrome c oxidase I JBrowse link 10 94,260,148 94,268,276 RGD:1600115
RGD:1624291
G Tsfm Ts translation elongation factor, mitochondrial JBrowse link 7 70,311,948 70,319,389 RGD:1624291
RGD:1600115
termination of mitochondrial transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mterf1 mitochondrial transcription termination factor 1 JBrowse link 4 27,365,310 27,372,374 RGD:1624291
RGD:13792537
RGD:1600115
G Mterf2 mitochondrial transcription termination factor 2 JBrowse link 7 24,638,208 24,649,599 RGD:13792537
transcription elongation from mitochondrial promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tefm transcription elongation factor, mitochondrial JBrowse link 10 67,476,006 67,478,830 RGD:1600115
transcription initiation from mitochondrial promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tfam transcription factor A, mitochondrial JBrowse link 20 18,594,057 18,606,106 RGD:1624291
RGD:1600115
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:1600115
RGD:1624291
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291

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Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      organic substance metabolic process 11359
        macromolecule metabolic process 9815
          gene expression 6046
            mitochondrial gene expression 95
              mitochondrial RNA processing + 14
              mitochondrial transcription + 17
              mitochondrial translation + 65
              regulation of mitochondrial gene expression + 32
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.