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ONTOLOGY REPORT - ANNOTATIONS


Term:presynaptic endocytosis
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Accession:GO:0140238 term browser browse the term
Definition:A vesicle-mediated transport process in which the presynapse take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


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clathrin-dependent synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btbd8 BTB domain containing 8 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6104538|PMID:29262337)
GO_REF:0000002
UniProt
RGD
InterPro
PMID:29262337 GO_REF:0000002, GO_REF:0000024, MGI:MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
G Itsn1 intersectin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:31,943,119...32,069,249
Ensembl chr11:31,893,489...32,069,249
JBrowse link
G Itsn2 intersectin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:30,098,378...30,208,694
Ensembl chr 6:30,098,380...30,187,337
JBrowse link
negative regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt11 synaptotagmin 11 IMP PMID:26589353 ParkinsonsUK-UCL PMID:26589353 RGD:11079192 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177
JBrowse link
positive regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2m1 adaptor related protein complex 2 subunit mu 1 IMP RGD PMID:19762466 RGD:13461856 NCBI chr11:84,041,184...84,047,542
Ensembl chr11:84,041,184...84,047,546
JBrowse link
G Bcl2l1 Bcl2-like 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:17437541 RGD:8554440 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm1l dynamin 1-like IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
G LOC102556337 mitochondrial fission factor-like IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 9:90,880,586...90,908,848
Ensembl chr 9:90,880,614...90,908,852
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:18445495 RGD:13462049 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Mff mitochondrial fission factor IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 9:88,490,280...88,518,517
Ensembl chr 9:88,493,593...88,517,827
JBrowse link
G Nlgn1 neuroligin 1 ISO
IMP
(MGI:MGI:4355770|PMID:19628693) RGD PMID:19628693, PMID:19628693 MGI:MGI:4355770, RGD:8554760 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:21808019 RGD:13506237 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IMP RGD PMID:26627835 RGD:11532172 NCBI chr15:51,896,427...51,968,075
Ensembl chr15:51,896,615...51,967,897
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:14532001 RGD:13464359 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:21808019 RGD:13506237 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Tor1a torsin family 1, member A ISO
ISS
(PMID:21102408)
GO_REF:0000024
RGD
UniProt
PMID:21102408 GO_REF:0000024 NCBI chr 3:9,800,322...9,807,318
Ensembl chr 3:9,800,322...9,807,328
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 IDA
IMP
PMID:28111082 SynGO PMID:28111082, PMID:28111082 RGD:13702195, RGD:13702195 NCBI chr10:56,552,921...56,558,562
Ensembl chr10:56,552,983...56,558,487
JBrowse link
regulation of synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btbd9 BTB domain containing 9 ISO MGI:MGI:4127237 (MGI:MGI:5438074|PMID:22536397) RGD PMID:22536397 MGI:MGI:5438074 NCBI chr20:8,899,286...9,253,936
Ensembl chr20:8,901,931...9,249,820
JBrowse link
G Calm1 calmodulin 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:124,217,241...124,225,292
Ensembl chr 6:124,217,241...124,225,292
JBrowse link
G Calm2 calmodulin 2 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 6:11,067,675...11,080,078
Ensembl chr15:65,506,874...65,507,968
JBrowse link
G Calm3 calmodulin 3 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 1:78,844,520...78,851,628
Ensembl chr 1:78,843,080...78,851,719
JBrowse link
G Dgkq diacylglycerol kinase, theta ISO (MGI:MGI:5807028|PMID:26748701) RGD PMID:26748701 MGI:MGI:5807028 NCBI chr14:2,069,409...2,083,370
Ensembl chr14:2,069,409...2,083,370
JBrowse link
G Dnm1 dynamin 1 IMP RGD PMID:16648848 RGD:13504740 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (MGI:MGI:6189511|PMID:25501810) RGD PMID:25501810 MGI:MGI:6189511 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:18842885 RGD:8554167 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma ISO (MGI:MGI:3054280|PMID:15386003) RGD PMID:15386003 MGI:MGI:3054280 NCBI chr 7:11,267,207...11,294,291
Ensembl chr 7:11,267,218...11,294,249
JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta IEA
ISO
GO_REF:0000107
(MGI:MGI:4830393|PMID:20810903)
Ensembl
RGD
PMID:20810903 GO_REF:0000107, MGI:MGI:4830393 NCBI chr15:4,209,702...4,236,895
Ensembl chr15:4,209,703...4,236,895
JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IDA
IMP
PMID:26627835 SynGO PMID:26627835, PMID:26627835 RGD:11532172, RGD:11532172 NCBI chr15:51,896,427...51,968,075
Ensembl chr15:51,896,615...51,967,897
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 ISO
IEA
UniProtKB:O60890 (PMID:27160703)
GO_REF:0000107
RGD
Ensembl
PMID:27160703 GO_REF:0000107 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Scamp5 secretory carrier membrane protein 5 IDA
IMP
PMID:25057210 SynGO PMID:25057210, PMID:25057210 RGD:13702419, RGD:13702419 NCBI chr 8:62,221,820...62,266,269
Ensembl chr 8:62,220,892...62,248,017
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 IMP RGD PMID:22750032 RGD:13463484 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Slc17a7 solute carrier family 17 member 7 IMP RGD PMID:16815333 RGD:13504741 NCBI chr 1:101,161,265...101,172,292
Ensembl chr 1:101,161,252...101,173,174
JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:18842885 RGD:8554167 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Syt7 synaptotagmin 7 ISO (MGI:MGI:6189675|PMID:14532108) RGD PMID:14532108 MGI:MGI:6189675 NCBI chr 1:226,435,816...226,498,008
Ensembl chr 1:226,435,979...226,493,377
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 EXP
IMP
IDA
PMID:26607000 SynGO PMID:26607000, PMID:26607000, PMID:26607000 RGD:11058152, RGD:11058152, RGD:11058152 NCBI chr13:80,460,699...80,483,597
Ensembl chr13:80,460,694...80,483,600
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 ISO
IBA
UniProtKB:Q8BZ98 (MGI:MGI:5285027|PMID:21689597)
PMID:21873635
RGD PMID:21689597, PMID:21873635 MGI:MGI:5285027, RGD:13792537 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm2 dynamin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
JBrowse link
G Dnm3 dynamin 3 ISO
IBA
UniProtKB:P39053 (MGI:MGI:5285027|PMID:21689597)
PMID:21873635
RGD PMID:21689597, PMID:21873635 MGI:MGI:5285027, RGD:13792537 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 IC PMID:21832070 SynGO PMID:21832070 RGD:9685531 NCBI chr 5:128,923,809...129,022,268
Ensembl chr 5:128,923,934...129,022,054
JBrowse link
G Mx1 myxovirus (influenza virus) resistance 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:37,891,150...37,916,775
Ensembl chr11:37,891,156...37,914,983
JBrowse link
G Mx2 MX dynamin like GTPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:38,035,306...38,066,185
Ensembl chr11:38,035,450...38,059,950
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Snap91 synaptosome associated protein 91 ISO
IBA
(MGI:MGI:5707086|PMID:26412491)
PMID:21873635
RGD PMID:26412491, PMID:21873635 MGI:MGI:5707086, RGD:13792537 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
synaptic vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltb clathrin, light chain B NAS PMID:3563513 UniProt PMID:3563513 RGD:70686 NCBI chr17:10,537,348...10,554,999
Ensembl chr17:10,537,365...10,554,989
JBrowse link
synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO (MGI:MGI:6189485|PMID:27840001) RGD PMID:27840001 MGI:MGI:6189485 NCBI chr12:13,715,843...13,718,813
Ensembl chr12:13,715,843...13,718,841
JBrowse link
G Actg1 actin, gamma 1 ISO (MGI:MGI:6189485|PMID:27840001) RGD PMID:27840001 MGI:MGI:6189485 NCBI chr10:109,518,429...109,521,288
Ensembl chr 3:75,643,054...75,644,954
Ensembl chr10:75,643,054...75,644,954
JBrowse link
G Amph amphiphysin ISO
IBA
MGI:MGI:2388118 (MGI:MGI:2176305|PMID:11879655)
PMID:21873635
RGD PMID:11879655, PMID:21873635 MGI:MGI:2176305, RGD:13792537 NCBI chr17:48,304,324...48,562,838
Ensembl chr17:48,304,322...48,562,905
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 IDA
IMP
PMID:19321783 SynGO PMID:19321783, PMID:19321783 RGD:12050109, RGD:12050109 NCBI chr11:84,041,184...84,047,542
Ensembl chr11:84,041,184...84,047,546
JBrowse link
G Arf6 ADP-ribosylation factor 6 IDA
IMP
PMID:26731518 SynGO PMID:26731518, PMID:26731518 RGD:11556875, RGD:11556875 NCBI chr 6:91,697,109...91,698,257
Ensembl chr 6:91,697,109...91,698,255
JBrowse link
G Btbd8 BTB domain containing 8 ISO (MGI:MGI:6104538|PMID:29262337) RGD PMID:29262337 MGI:MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
G Canx calnexin ISS
ISO
GO_REF:0000024
(MGI:MGI:5288282|PMID:21747946)
UniProt
RGD
PMID:21747946 GO_REF:0000024, MGI:MGI:5288282 NCBI chr10:35,800,942...35,833,939
Ensembl chr10:35,800,942...35,833,861
JBrowse link
G Cd24 CD24 molecule ISO MGI:MGI:2179996 (MGI:MGI:3625625|PMID:16606832) RGD PMID:16606832 MGI:MGI:3625625 NCBI chr20:48,335,540...48,340,847
Ensembl chr20:48,335,540...48,340,846
JBrowse link
G Cdk5 cyclin-dependent kinase 5 IMP RGD PMID:12855954 RGD:1358501 NCBI chr 4:7,282,945...7,287,427
Ensembl chr 4:7,282,948...7,288,383
JBrowse link
G Cel carboxyl ester lipase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Cltc clathrin heavy chain IDA
IMP
PMID:16982422 SynGO PMID:16982422, PMID:16982422 RGD:13702168, RGD:13702168 NCBI chr10:74,014,560...74,070,578
Ensembl chr10:74,014,562...74,070,266
JBrowse link
G Dennd1a DENN domain containing 1A ISO (MGI:MGI:3694831|PMID:17182770) RGD PMID:17182770 MGI:MGI:3694831 NCBI chr 3:22,061,120...22,501,502
Ensembl chr 3:22,058,400...22,500,765
JBrowse link
G Dnm1 dynamin 1 ISO (MGI:MGI:3709249|PMID:17463283) RGD PMID:17463283 MGI:MGI:3709249 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Dnm2 dynamin 2 ISO (MGI:MGI:5285027|PMID:21689597) RGD PMID:21689597 MGI:MGI:5285027 NCBI chr 8:22,458,869...22,540,649
Ensembl chr 8:22,458,899...22,540,524
JBrowse link
G Dnm3 dynamin 3 ISO (MGI:MGI:5285027|PMID:21689597) RGD PMID:21689597 MGI:MGI:5285027 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Fcho2 FCH and mu domain containing endocytic adaptor 2 ISO
IBA
IGI
UniProtKB:D3ZIM5|UniProtKB:D3ZYR1 (MGI:MGI:5320276|PMID:20448150)
PMID:21873635
RGD PMID:20448150, PMID:21873635, PMID:20448150 MGI:MGI:5320276, RGD:13792537, RGD:12050101 NCBI chr 2:28,927,918...29,029,271
Ensembl chr 2:28,926,107...29,029,176
JBrowse link
G Grn granulin precursor IMP RGD PMID:21813674 RGD:5509044 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Itsn1 intersectin 1 ISO (MGI:MGI:3811659|PMID:18676989) RGD PMID:18676989 MGI:MGI:3811659 NCBI chr11:31,943,119...32,069,249
Ensembl chr11:31,893,489...32,069,249
JBrowse link
G LOC100910792 amphiphysin-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:47,716,143...47,817,243
Ensembl chr17:47,721,977...47,817,248
JBrowse link
G Nlgn1 neuroligin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Ophn1 oligophrenin 1 ISO
IBA
MGI:MGI:700009 (MGI:MGI:4359148|PMID:19481455)
PMID:21873635
RGD PMID:19481455, PMID:21873635 MGI:MGI:4359148, RGD:13792537 NCBI chr  X:68,185,865...68,579,518
Ensembl chr  X:68,189,161...68,563,137
JBrowse link
G Pacsin1 protein kinase C and casein kinase substrate in neurons 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:5304995|PMID:21926968)
UniProt
Ensembl
RGD
PMID:21926968 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5304995 NCBI chr20:7,241,248...7,286,702
Ensembl chr20:7,279,820...7,286,586
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IDA
IBA
IMP
PMID:21808019
PMID:21873635
SynGO
GO_Central
PMID:21808019, PMID:21873635, PMID:21808019 RGD:13506237, RGD:13792537, RGD:13506237 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
G Rab27b RAB27B, member RAS oncogene family IDA
IMP
PMID:20926670 SynGO PMID:20926670, PMID:20926670 RGD:13432355, RGD:13432355 NCBI chr18:68,486,006...68,644,595
Ensembl chr18:68,488,942...68,551,558
JBrowse link
G RGD1307100 similar to RIKEN cDNA D630029K19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,555,742...123,766,675
Ensembl chr 2:123,555,673...123,766,676
JBrowse link
G Scrib scribble planar cell polarity protein ISO (MGI:MGI:4365512|PMID:19458197) RGD PMID:19458197 MGI:MGI:4365512 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 ISO
IMP
IDA
MGI:MGI:2151070 (MGI:MGI:4359148|PMID:19481455)
PMID:22099461
RGD PMID:19481455, PMID:22099461, PMID:22099461 MGI:MGI:4359148, RGD:13702445, RGD:13702445 NCBI chr 5:103,479,767...103,654,507
Ensembl chr 5:103,479,767...103,654,247
JBrowse link
G Snap91 synaptosome associated protein 91 IDA
IBA
IMP
PMID:21808019
PMID:21873635
SynGO
GO_Central
PMID:21808019, PMID:21873635, PMID:21808019 RGD:13506237, RGD:13792537, RGD:13506237 NCBI chr 8:94,447,558...94,564,772
Ensembl chr 8:94,447,550...94,564,525
JBrowse link
G Snca synuclein alpha IBA
ISO
PMID:21873635
(MGI:MGI:3850310|PMID:18980610), (MGI:MGI:5605098|PMID:25009269)
RGD PMID:18980610, PMID:25009269, PMID:21873635 MGI:MGI:3850310, MGI:MGI:5605098, RGD:13792537 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
G Sncb synuclein, beta IBA
ISO
PMID:21873635
(MGI:MGI:5605098|PMID:25009269)
RGD PMID:25009269, PMID:21873635 MGI:MGI:5605098, RGD:13792537 NCBI chr17:10,384,472...10,392,776
Ensembl chr17:10,384,511...10,392,843
JBrowse link
G Sncg synuclein, gamma IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:10,722,110...10,726,648
Ensembl chr16:10,722,106...10,726,707
JBrowse link
G Ston1 stonin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:12,332,465...12,379,783
Ensembl chr 6:12,362,813...12,379,783
JBrowse link
G Ston2 stonin 2 IMP
IBA
IDA
ISS
ISO
PMID:22727701
PMID:21873635
GO_REF:0000024
UniProtKB:O14656 (PMID:21102408)
UniProt
RGD
PMID:21102408, PMID:22727701, PMID:21873635, PMID:22727701 GO_REF:0000024, RGD:12050122, RGD:13792537, RGD:12050122 NCBI chr 6:115,398,586...115,547,552
Ensembl chr 6:115,399,326...115,513,354
JBrowse link
G Stx1a syntaxin 1A ISO (PMID:26635000) RGD PMID:26635000 NCBI chr12:24,682,050...24,710,002
Ensembl chr12:24,682,041...24,710,019
JBrowse link
G Synj1 synaptojanin 1 ISO
IBA
ISS
IEA
MGI:MGI:2179801 (MGI:MGI:3797309|PMID:18093523)
PMID:21873635
GO_REF:0000024
GO_REF:0000002
UniProtKB:Q8CHC4 (PMID:18093523)
RGD
ParkinsonsUK-UCL
InterPro
PMID:18093523, PMID:21873635 GO_REF:0000002, GO_REF:0000024, MGI:MGI:3797309, RGD:13792537 NCBI chr11:31,105,784...31,181,573
Ensembl chr11:31,104,787...31,180,642
JBrowse link
G Synj2 synaptojanin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:46,835,922...46,932,544
Ensembl chr 1:46,835,971...46,932,529
JBrowse link
G Syp synaptophysin IEA
ISO
GO_REF:0000107
(MGI:MGI:5141572|PMID:21658579)
Ensembl
RGD
PMID:21658579 GO_REF:0000107, MGI:MGI:5141572 NCBI chr  X:15,694,699...15,709,244
Ensembl chr  X:15,695,566...15,707,436
JBrowse link
G Syt1 synaptotagmin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:50,084,063...50,638,996
Ensembl chr 7:50,084,060...50,638,798
JBrowse link
G Syt2 synaptotagmin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:51,569,248...51,577,824
Ensembl chr13:51,534,025...51,578,052
JBrowse link
G Syt5 synaptotagmin 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:72,859,806...72,867,934
Ensembl chr 1:72,860,218...72,867,930
JBrowse link
G Syt8 synaptotagmin 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:215,605,408...215,607,602
Ensembl chr 1:215,605,404...215,607,696
JBrowse link
G Tbc1d24 TBC1 domain family, member 24 ISO MGI:MGI:5692831 (MGI:MGI:6279048|PMID:30335140) RGD PMID:30335140 MGI:MGI:6279048 NCBI chr10:13,551,100...13,576,739
Ensembl chr10:13,551,100...13,558,384
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 ISS
ISO
GO_REF:0000024
(MGI:MGI:3573806|PMID:15475946)
UniProt
RGD
PMID:15475946 GO_REF:0000024, MGI:MGI:3573806 NCBI chr10:55,675,171...55,679,405
Ensembl chr10:55,675,575...55,679,450
JBrowse link
synaptic vesicle uncoating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 IBA
ISO
PMID:21873635
(MGI:MGI:4439191|PMID:20160091)
RGD PMID:20160091, PMID:21873635 MGI:MGI:4439191, RGD:13792537 NCBI chr 5:120,330,372...120,492,515
Ensembl chr 5:120,340,646...120,492,487
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IC PMID:9878698 SynGO PMID:9878698 RGD:10059325 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 ISO UniProtKB:Q62420|UniProtKB:Q62421 (MGI:MGI:5300660|PMID:22099461) RGD PMID:22099461 MGI:MGI:5300660 NCBI chr 9:11,031,847...11,055,285
Ensembl chr 9:11,031,841...11,055,285
JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 ISO UniProtKB:Q62419|UniProtKB:Q62421 (MGI:MGI:5300660|PMID:22099461) RGD PMID:22099461 MGI:MGI:5300660 NCBI chr 5:103,479,767...103,654,507
Ensembl chr 5:103,479,767...103,654,247
JBrowse link
G Sh3gl3 SH3 domain containing GRB2 like 3, endophilin A3 ISO UniProtKB:Q62419|UniProtKB:Q62420 (MGI:MGI:5300660|PMID:22099461) RGD PMID:22099461 MGI:MGI:5300660 NCBI chr 1:144,069,641...144,200,402
Ensembl chr 1:144,069,638...144,200,397
JBrowse link
G Synj1 synaptojanin 1 ISO MGI:MGI:2179801 (MGI:MGI:1346710|PMID:10535736), (MGI:MGI:2447947|PMID:12481038), (MGI:MGI:5300660|PMID:22099461) RGD PMID:10535736, PMID:12481038, PMID:22099461 MGI:MGI:1346710, MGI:MGI:2447947, MGI:MGI:5300660 NCBI chr11:31,105,784...31,181,573
Ensembl chr11:31,104,787...31,180,642
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular localization 2937
        establishment of localization in cell 2156
          presynaptic endocytosis 75
            synaptic vesicle endocytosis + 75
Path 2
Term Annotations click to browse term
  biological_process 20014
    localization 6486
      establishment of localization 4918
        transport 4774
          vesicle-mediated transport 1652
            vesicle-mediated transport in synapse 257
              presynaptic endocytosis 75
                synaptic vesicle endocytosis + 75
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.