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ONTOLOGY REPORT - ANNOTATIONS


Term:general transcription initiation factor binding
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Accession:GO:0140296 term browser browse the term
Definition:Interacting selectively and non-covalently with a general transcription initiation factor, a protein that contributes to transcription start site selection and transcription initiation.


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RNA polymerase I general transcription initiation factor binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Polr1e RNA polymerase I subunit E JBrowse link 5 60,572,573 60,588,097 RGD:1624291
RNA polymerase II general transcription initiation factor binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ar androgen receptor JBrowse link X 67,656,253 67,828,998 RGD:1600115
RGD:1624291
TBP-class protein binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:1624291
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit JBrowse link 6 137,762,230 137,808,573 RGD:1600115
G Cand1 cullin-associated and neddylation-dissociated 1 JBrowse link 7 62,124,362 62,162,451 RGD:634479
G Cand2 cullin-associated and neddylation-dissociated 2 (putative) JBrowse link 4 147,686,487 147,714,593 RGD:634488
RGD:1600115
RGD:1624291
G Dr1 down-regulator of transcription 1 JBrowse link 14 2,463,651 2,475,004 RGD:1624291
RGD:13792537
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
RGD:1624291
G Gtf2a1 general transcription factor 2A subunit 1 JBrowse link 6 115,321,110 115,352,659 RGD:1624291
G Gtf2a2 general transcription factor 2A subunit 2 JBrowse link 8 76,422,341 76,435,587 RGD:1624291
RGD:13792537
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:1600115
RGD:13792537
RGD:1624291
G Hnrnpf heterogeneous nuclear ribonucleoprotein F JBrowse link 4 149,957,143 149,978,896 RGD:632913
G LOC100910207 protein Dr1-like JBrowse link 14 1,621,021 1,632,432 RGD:13792537
G LOC103695118 transcription initiation factor IIA subunit 2 RGD:13792537
G Naca nascent polypeptide associated complex subunit alpha JBrowse link 7 2,458,283 2,470,674 RGD:1624291
G Nkx2-1 NK2 homeobox 1 JBrowse link 6 77,418,096 77,423,383 RGD:12792996
G Psmc1 proteasome 26S subunit, ATPase 1 JBrowse link 6 124,123,283 124,135,644 RGD:6771232
RGD:13792537
G Psmc2 proteasome 26S subunit, ATPase 2 JBrowse link 4 9,867,132 9,881,383 RGD:6771232
RGD:13792537
G Psmc5 proteasome 26S subunit, ATPase 5 JBrowse link 10 94,445,877 94,451,811 RGD:6771232
RGD:13792537
G Rnf4 ring finger protein 4 JBrowse link 14 81,658,400 81,679,756 RGD:69969
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:1624291
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:1624291
G Taf1 TATA-box binding protein associated factor 1 JBrowse link X 71,412,291 71,486,456 RGD:1624291
G Taf12 TATA-box binding protein associated factor 12 JBrowse link 5 150,459,701 150,476,521 RGD:13792537
G Thra thyroid hormone receptor alpha JBrowse link 10 86,657,285 86,684,935 RGD:1600115
RGD:1624291
G Yeats2 YEATS domain containing 2 JBrowse link 11 84,330,064 84,595,296 RGD:1624291
TFIIB-class transcription factor binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:1624291
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
RGD:1624291
G Tbp TATA box binding protein JBrowse link 1 57,491,381 57,509,335 RGD:1624291
G Tcf4 transcription factor 4 JBrowse link 18 65,285,320 65,507,983 RGD:1624291
RGD:1600115
TFIID-class transcription factor complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:1624291
G Edf1 endothelial differentiation-related factor 1 JBrowse link 3 2,781,169 2,785,474 RGD:1624291
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 1 80,256,973 80,268,198 RGD:1624291
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 10 2,010,140 2,037,953 RGD:1624291
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:1624291
G Nop58 NOP58 ribonucleoprotein JBrowse link 9 66,495,881 66,520,521 RGD:1624291
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:1624291
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:1624291
G Taf2 TATA-box binding protein associated factor 2 JBrowse link 7 94,698,987 94,755,924 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Znhit6 zinc finger, HIT-type containing 6 JBrowse link 2 251,453,503 251,484,760 RGD:1624291
TFIIF-class transcription factor complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctdp1 CTD phosphatase subunit 1 JBrowse link 18 76,922,913 76,985,095 RGD:1624291
G Gtf2f1 general transcription factor IIF subunit 1 JBrowse link 9 10,032,806 10,042,392 RGD:13792537
TFIIH-class transcription factor complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
RGD:13792537
RGD:1624291
G Taf7 TATA-box binding protein associated factor 7 JBrowse link 18 30,779,149 30,781,297 RGD:1624291
TFIIIA-class transcription factor binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Optn optineurin JBrowse link 17 77,167,700 77,218,374 RGD:6480517
TFIIIC-class transcription factor complex binding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB JBrowse link 2 30,248,458 30,340,211 RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1624291
G Rptor regulatory associated protein of MTOR, complex 1 JBrowse link 10 108,750,620 109,058,691 RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  molecular_function 19678
    binding 16040
      protein binding 12737
        transcription factor binding 732
          general transcription initiation factor binding 45
            RNA polymerase I general transcription initiation factor binding 1
            RNA polymerase II general transcription initiation factor binding + 20
            RNA polymerase III general transcription initiation factor binding + 4
            TBP-class protein binding 24
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.