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ONTOLOGY REPORT - ANNOTATIONS


Term:visual system development
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Accession:GO:0150063 term browser browse the term
Definition:The process whose specific outcome is the progression of the visual system over time, from its formation to the mature structure, including the eye, parts of the central nervous system (CNS) involved in processing of visual inputs, and connecting nerve pathways.
Synonyms:related_synonym: optic pathway development;   visual pathway development


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visual system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2ry12 purinergic receptor P2Y12 ISO UniProtKB:Q9Z0D9 (MGI:MGI:5806217|PMID:26948129) RGD PMID:26948129 MGI:MGI:5806217 NCBI chr 2:149,440,807...149,482,592
Ensembl chr 2:149,441,598...149,444,548
JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 ISO (MGI:MGI:3054139|PMID:15363391) RGD PMID:15363391 MGI:MGI:3054139 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Miat myocardial infarction associated transcript ISO (MGI:MGI:4458994|PMID:20459797) RGD PMID:20459797 MGI:MGI:4458994 NCBI chr12:50,447,251...50,461,859 JBrowse link
G Neurod1 neuronal differentiation 1 ISO
ISS
(MGI:MGI:2158684|PMID:11861467)
GO_REF:0000024
RGD
UniProt
PMID:11861467 GO_REF:0000024, MGI:MGI:2158684 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Neurod4 neuronal differentiation 4 ISO (MGI:MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:MGI:2158684 NCBI chr 7:9,699,964...9,712,067
Ensembl chr 7:9,699,961...9,711,928
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO
ISS
(MGI:MGI:3691257|PMID:17075007)
GO_REF:0000024
RGD
UniProt
PMID:17075007 GO_REF:0000024, MGI:MGI:3691257 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Rorb RAR-related orphan receptor B ISO
ISS
(MGI:MGI:5546314|PMID:23652001)
GO_REF:0000024
RGD
UniProt
PMID:23652001 GO_REF:0000024, MGI:MGI:5546314 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 ISO MGI:MGI:3526871 (MGI:MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:MGI:3525751 NCBI chr 9:67,234,612...67,284,504
Ensembl chr 9:67,234,303...67,282,600
JBrowse link
G Ahr aryl hydrocarbon receptor ISO (MGI:MGI:1889403|PMID:10973493) RGD PMID:10973493 MGI:MGI:1889403 NCBI chr 6:54,963,990...55,001,806
Ensembl chr 6:54,963,990...55,001,464
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:MGI:1857891|MGI:MGI:2180721 (MGI:MGI:3055706|PMID:15366004), (MGI:MGI:3612223|PMID:16368932) RGD PMID:15366004, PMID:16368932 MGI:MGI:3055706, MGI:MGI:3612223 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 ISO
IEA
MGI:MGI:2448591 (MGI:MGI:1926242|PMID:11044403)
GO_REF:0000107
RGD
Ensembl
PMID:11044403 GO_REF:0000107, MGI:MGI:1926242 NCBI chr 1:78,456,409...78,573,374
Ensembl chr 1:78,456,409...78,573,374
JBrowse link
G B9d1 B9 domain containing 1 ISO MGI:MGI:5301332 (MGI:MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:MGI:5300833 NCBI chr10:47,784,294...47,794,399
Ensembl chr10:47,785,033...47,792,590
Ensembl chr10:47,785,033...47,792,590
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI:MGI:1857137|MGI:MGI:2137520 (MGI:MGI:1095762|PMID:9268572), (MGI:MGI:3043486|PMID:14681194) RGD PMID:9268572, PMID:14681194 MGI:MGI:1095762, MGI:MGI:3043486 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO MGI:MGI:1338938 (MGI:MGI:3574003|PMID:15673568) RGD PMID:15673568 MGI:MGI:3574003 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO
IEA
(PMID:15454078)
GO_REF:0000107
RGD
Ensembl
PMID:15454078 GO_REF:0000107 NCBI chr 4:150,635,808...151,270,790
Ensembl chr 4:150,641,066...150,829,913
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A ISO MGI:MGI:5708063 (MGI:MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:MGI:5696765 NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C ISO MGI:MGI:1933758|MGI:MGI:3840687 (MGI:MGI:3839493|PMID:19276117) RGD PMID:19276117 MGI:MGI:3839493 NCBI chr 1:216,661,067...216,663,791
Ensembl chr 1:216,661,080...216,663,721
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:MGI:3588650 (MGI:MGI:3611161|PMID:16207732) RGD PMID:16207732 MGI:MGI:3611161 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:1916503 (MGI:MGI:2682441|PMID:12546709) RGD PMID:12546709 MGI:MGI:2682441 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Cryab crystallin, alpha B ISO MGI:MGI:88515 (MGI:MGI:2682441|PMID:12546709) RGD PMID:12546709 MGI:MGI:2682441 NCBI chr 8:55,178,543...55,182,546
Ensembl chr 8:55,178,289...55,182,545
JBrowse link
G Cryba1 crystallin, beta A1 ISO MGI:MGI:1857969 (MGI:MGI:1350675|PMID:10585769) RGD PMID:10585769 MGI:MGI:1350675 NCBI chr10:65,160,777...65,167,504
Ensembl chr10:65,161,152...65,167,494
JBrowse link
G Cryba4 crystallin, beta A4 ISO (PMID:16960806) RGD PMID:16960806 NCBI chr12:50,407,843...50,414,434
Ensembl chr12:50,407,843...50,414,432
JBrowse link
G Crybb2 crystallin, beta B2 IEP
ISO
MGI:MGI:2137511 (MGI:MGI:2137502|PMID:11381063) RGD PMID:11381063, PMID:8706714 MGI:MGI:2137502, RGD:1298813 NCBI chr12:49,577,580...49,588,555
Ensembl chr12:49,578,633...49,588,555
JBrowse link
G Crygc crystallin, gamma C ISO MGI:MGI:2176919 (MGI:MGI:2156903|PMID:11773036) RGD PMID:11773036 MGI:MGI:2156903 NCBI chr 9:71,786,246...71,788,281
Ensembl chr 9:71,786,248...71,788,281
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:15967433 RGD:2306661 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IEA
ISO
GO_REF:0000107
(PMID:25406291)
Ensembl
RGD
PMID:25406291 GO_REF:0000107 NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014
JBrowse link
G Fat1 FAT atypical cadherin 1 ISO MGI:MGI:2662293 (MGI:MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:MGI:5766588 NCBI chr16:50,372,150...50,501,716
Ensembl chr16:50,372,128...50,501,921
JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
JBrowse link
G Fbn2 fibrillin 2 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO MGI:MGI:3042750 (MGI:MGI:3039989|PMID:15105374) RGD PMID:15105374 MGI:MGI:3039989 NCBI chr16:20,645,956...20,652,890
Ensembl chr16:20,645,957...20,652,889
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:MGI:1856705|MGI:MGI:1857869 (MGI:MGI:1340945|PMID:10395790), (MGI:MGI:1355577|PMID:10767326) RGD PMID:10395790, PMID:10767326 MGI:MGI:1340945, MGI:MGI:1355577 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:MGI:1857865 (MGI:MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:MGI:1355577 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Foxe3 forkhead box E3 ISO MGI:MGI:2387330 (MGI:MGI:1932584|PMID:11309658) RGD PMID:11309658 MGI:MGI:1932584 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Foxp2 forkhead box P2 ISO MGI:MGI:3723630 (MGI:MGI:3723373|PMID:17619227) RGD PMID:17619227 MGI:MGI:3723373 NCBI chr 4:41,364,441...41,944,685
Ensembl chr 4:41,364,441...41,942,023
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:MGI:2388397 (MGI:MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gja8 gap junction protein, alpha 8 ISO MGI:MGI:2137525|MGI:MGI:3052418 (MGI:MGI:2156142|PMID:11782410), (MGI:MGI:3047041|PMID:15253273) RGD PMID:11782410, PMID:15253273 MGI:MGI:2156142, MGI:MGI:3047041 NCBI chr 2:199,050,854...199,052,470
Ensembl chr 2:199,050,854...199,052,470
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:98297 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO
IEA
MGI:MGI:1915913 (MGI:MGI:4947900|PMID:21296886)
GO_REF:0000107
RGD
Ensembl
PMID:21296886 GO_REF:0000107, MGI:MGI:4947900 NCBI chr 3:43,223,892...43,359,069
Ensembl chr 3:43,255,567...43,359,074
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO MGI:MGI:4942413 (MGI:MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:MGI:4943100 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Hes5 hes family bHLH transcription factor 5 ISO
ISS
(MGI:MGI:3703278|PMID:17331197)
GO_REF:0000024
RGD
UniProt
PMID:17331197 GO_REF:0000024, MGI:MGI:3703278 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Hesx1 HESX homeobox 1 ISO MGI:MGI:3822474 (MGI:MGI:3821905|PMID:19093031) RGD PMID:19093031 MGI:MGI:3821905 NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Hsf4 heat shock transcription factor 4 ISO MGI:MGI:3056560|MGI:MGI:3057199 (MGI:MGI:3056833|PMID:15483628), (MGI:MGI:3721138|PMID:16595169) RGD PMID:15483628, PMID:16595169 MGI:MGI:3056833, MGI:MGI:3721138 NCBI chr19:37,225,800...37,232,048
Ensembl chr19:37,226,186...37,231,912
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO MGI:MGI:1857713 (MGI:MGI:1336582|PMID:10196361) RGD PMID:10196361 MGI:MGI:1336582 NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
JBrowse link
G Lama1 laminin subunit alpha 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:115,916,907...116,042,123
Ensembl chr 9:115,916,907...116,042,123
JBrowse link
G Lim2 lens intrinsic membrane protein 2 ISO MGI:MGI:1862040 (MGI:MGI:1197732|PMID:9238094) RGD PMID:9238094 MGI:MGI:1197732 NCBI chr 1:98,495,082...98,501,248
Ensembl chr 1:98,495,082...98,501,249
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta ISO MGI:MGI:2158463|MGI:MGI:2386570|MGI:MGI:3714802 (MGI:MGI:1353150|PMID:10660670), (MGI:MGI:4461349|PMID:20568247) RGD PMID:10660670, PMID:20568247 MGI:MGI:1353150, MGI:MGI:4461349 NCBI chr 3:12,608,748...12,686,937
Ensembl chr 3:12,609,574...12,686,869
JBrowse link
G Mab21l1 mab-21 like 1 ISO (MGI:MGI:2652201|PMID:12642482) RGD PMID:12642482 MGI:MGI:2652201 NCBI chr 2:145,174,876...145,177,265
Ensembl chr 2:145,174,876...145,177,265
JBrowse link
G Mab21l2 mab-21 like 2 ISO MGI:MGI:3511363 (MGI:MGI:3510098|PMID:15385160) RGD PMID:15385160 MGI:MGI:3510098 NCBI chr 2:185,849,749...185,852,833
Ensembl chr 2:185,850,232...185,852,759
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO MGI:MGI:2676654 (MGI:MGI:2674169|PMID:12941696) RGD PMID:12941696 MGI:MGI:2674169 NCBI chr 2:43,329,516...43,393,203
Ensembl chr 2:43,329,516...43,393,207
JBrowse link
G Med1 mediator complex subunit 1 ISO MGI:MGI:2684189 (MGI:MGI:2682174|PMID:14500757) RGD PMID:14500757 MGI:MGI:2682174 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Mitf melanocyte inducing transcription factor ISO MGI:MGI:88401 (MGI:MGI:3512656|PMID:15576400) RGD PMID:15576400 MGI:MGI:3512656 NCBI chr 4:130,172,484...130,425,496
Ensembl chr 4:130,172,727...130,425,532
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 ISO MGI:MGI:5288506 (MGI:MGI:5287350|PMID:21531335) RGD PMID:21531335 MGI:MGI:5287350 NCBI chr 9:100,440,482...100,445,158
Ensembl chr 9:100,440,486...100,445,158
JBrowse link
G Mtnr1a melatonin receptor 1A IEP RGD PMID:12890503 RGD:9588674 NCBI chr16:50,339,358...50,358,809
Ensembl chr16:50,339,358...50,358,809
JBrowse link
G Mtnr1b melatonin receptor 1B IEP RGD PMID:12890503 RGD:9588674 NCBI chr 8:14,359,270...14,373,894
Ensembl chr 8:14,359,270...14,373,894
JBrowse link
G Myf5 myogenic factor 5 ISO MGI:MGI:1857973|MGI:MGI:3055340 (MGI:MGI:3849775|PMID:19531352) RGD PMID:19531352 MGI:MGI:3849775 NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
JBrowse link
G Neurod1 neuronal differentiation 1 ISO MGI:MGI:108055 (MGI:MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:MGI:2158684 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Neurod4 neuronal differentiation 4 ISO MGI:MGI:1339708 (MGI:MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:MGI:2158684 NCBI chr 7:9,699,964...9,712,067
Ensembl chr 7:9,699,961...9,711,928
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:MGI:2176490|MGI:MGI:2176560 (MGI:MGI:3054148|PMID:15371513), (MGI:MGI:3582135|PMID:16000615) RGD PMID:15371513, PMID:16000615 MGI:MGI:3054148, MGI:MGI:3582135 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Pax2 paired box 2 ISO
ISS
MGI:MGI:1857673 (MGI:MGI:2662558|PMID:12756174)
GO_REF:0000024
RGD
UniProt
PMID:12756174 GO_REF:0000024, MGI:MGI:2662558 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pax6 paired box 6 ISO MGI:MGI:102764|MGI:MGI:108564|MGI:MGI:1856158|MGI:MGI:1931308|MGI:MGI:1934347|MGI:MGI:1934348 (MGI:MGI:1927276|PMID:11069887), (MGI:MGI:1928799|PMID:11062307), (MGI:MGI:2181466|PMID:12072567), (MGI:MGI:2384485|PMID:12183364), (MGI:MGI:2654287|PMID:12648492), (MGI:MGI:2662558|PMID:12756174), (MGI:MGI:3584303|PMID:16080917) RGD PMID:11062307, PMID:11069887, PMID:12072567, PMID:12183364, PMID:12648492, PMID:12756174, PMID:16080917 MGI:MGI:1927276, MGI:MGI:1928799, MGI:MGI:2181466, MGI:MGI:2384485, MGI:MGI:2654287, MGI:MGI:2662558, MGI:MGI:3584303 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pcnt pericentrin ISO MGI:MGI:4340776 (MGI:MGI:5696764|PMID:25220058) RGD PMID:25220058 MGI:MGI:5696764 NCBI chr20:12,943,523...13,038,615
Ensembl chr20:12,944,786...13,038,431
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO (PMID:9618168) RGD PMID:9618168 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 ISO MGI:MGI:3530910 (MGI:MGI:3653971|PMID:16847320) RGD PMID:16847320 MGI:MGI:3653971 NCBI chr20:10,331,608...10,358,922
Ensembl chr20:10,334,308...10,358,922
JBrowse link
G Prss56 serine protease 56 ISO MGI:MGI:5444189 (MGI:MGI:5441705|PMID:21532570)
(PMID:21397065)
RGD PMID:21397065, PMID:21532570 MGI:MGI:5441705 NCBI chr 9:94,278,981...94,284,111
Ensembl chr 9:94,279,155...94,283,919
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ISO
IEA
(PMID:20512159)
GO_REF:0000107
RGD
Ensembl
PMID:20512159 GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:98214 (MGI:MGI:1096258|PMID:9376317) RGD PMID:9376317 MGI:MGI:1096258 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rax retina and anterior neural fold homeobox ISO
IEA
MGI:MGI:1856862|MGI:MGI:2152531 (MGI:MGI:1929394|PMID:11105055), (MGI:MGI:3575215|PMID:15789424), (MGI:MGI:48767|PMID:17247120), (MGI:MGI:54439|PMID:640224), (MGI:MGI:61292|PMID:13970081)
GO_REF:0000107
RGD
Ensembl
PMID:640224, PMID:11105055, PMID:13970081, PMID:15789424, PMID:17247120 GO_REF:0000107, MGI:MGI:1929394, MGI:MGI:3575215, MGI:MGI:48767, MGI:MGI:54439, MGI:MGI:61292 NCBI chr18:61,638,352...61,642,056
Ensembl chr18:61,638,352...61,642,056
JBrowse link
G Rcn1 reticulocalbin 1 ISO (MGI:MGI:4355498|PMID:19474196) RGD PMID:19474196 MGI:MGI:4355498 NCBI chr 3:95,404,863...95,419,110
Ensembl chr 3:95,406,284...95,418,679
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEP RGD PMID:9512345 RGD:633787 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Rpgrip1l Rpgrip1-like ISO MGI:MGI:3716208 (MGI:MGI:3715393|PMID:17553904), (MGI:MGI:3716248|PMID:17558409) RGD PMID:17553904, PMID:17558409 MGI:MGI:3715393, MGI:MGI:3716248 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Rxra retinoid X receptor alpha ISO
IEA
MGI:MGI:97858 (MGI:MGI:1096258|PMID:9376317)
GO_REF:0000107
RGD
Ensembl
PMID:9376317 GO_REF:0000107, MGI:MGI:1096258 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:MGI:1934268|MGI:MGI:3052661|MGI:MGI:95729 (MGI:MGI:2385969|PMID:12195432), (MGI:MGI:2662556|PMID:12756179), (MGI:MGI:3608482|PMID:16236765), (MGI:MGI:3807419|PMID:18582859)
Ensembl
RGD
PMID:12195432, PMID:12756179, PMID:16236765, PMID:18582859 GO_REF:0000107, MGI:MGI:2385969, MGI:MGI:2662556, MGI:MGI:3608482, MGI:MGI:3807419 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Six3 SIX homeobox 3 ISO MGI:MGI:97490 (MGI:MGI:2181466|PMID:12072567) RGD PMID:12072567 MGI:MGI:2181466 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:MGI:2176418 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Slc25a25 solute carrier family 25 member 25 ISO MGI:MGI:99778 (MGI:MGI:4947900|PMID:21296886) RGD PMID:21296886 MGI:MGI:4947900 NCBI chr 3:11,442,396...11,476,186
Ensembl chr 3:11,442,397...11,452,529
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:MGI:4417931 (MGI:MGI:5513052|PMID:23543054) RGD PMID:23543054 MGI:MGI:5513052 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
ISS
(PMID:21901792)
GO_REF:0000024
RGD
UniProt
PMID:21901792 GO_REF:0000024 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 ISO MGI:MGI:1856684 (MGI:MGI:3029604|PMID:14757819) RGD PMID:14757819 MGI:MGI:3029604 NCBI chr 3:147,772,006...147,790,946
Ensembl chr 3:147,772,165...147,789,158
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:MGI:4127851|MGI:MGI:4440463 (MGI:MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tmem231 transmembrane protein 231 ISO MGI:MGI:4284576 (MGI:MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:MGI:5300833 NCBI chr19:44,137,444...44,158,624
Ensembl chr19:44,137,423...44,158,624
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO (MGI:MGI:5285004|PMID:21856951) RGD PMID:21856951 MGI:MGI:5285004 NCBI chr 1:163,317,281...163,328,697
Ensembl chr 1:163,317,282...163,328,591
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 ISO MGI:MGI:88180 (MGI:MGI:3043486|PMID:14681194) RGD PMID:14681194 MGI:MGI:3043486 NCBI chr 9:113,699,151...113,732,601
Ensembl chr 9:113,699,170...113,732,622
JBrowse link
G Vax1 ventral anterior homeobox 1 ISO MGI:MGI:1346018 (MGI:MGI:3578573|PMID:15905411) RGD PMID:15905411 MGI:MGI:3578573 NCBI chr 1:280,334,897...280,338,813
Ensembl chr 1:280,334,897...280,338,813
JBrowse link
G Vax2 ventral anterior homeobox 2 ISO MGI:MGI:1277163 (MGI:MGI:3578573|PMID:15905411) RGD PMID:15905411 MGI:MGI:3578573 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
G Vsx2 visual system homeobox 2 ISO MGI:MGI:104554 (MGI:MGI:3512656|PMID:15576400) RGD PMID:15576400 MGI:MGI:3512656 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO
IEA
MGI:MGI:5558098|MGI:MGI:5558100 (MGI:MGI:5544506|PMID:24302887)
GO_REF:0000107
RGD
Ensembl
PMID:24302887 GO_REF:0000107, MGI:MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
G Wt1 WT1 transcription factor ISS
ISO
GO_REF:0000024
MGI:MGI:1857268|MGI:MGI:2183642 (MGI:MGI:2176638|PMID:11889045), (MGI:MGI:3574744|PMID:15716344)
UniProt
RGD
PMID:11889045, PMID:15716344 GO_REF:0000024, MGI:MGI:2176638, MGI:MGI:3574744 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 ISO MGI:MGI:1857807 (MGI:MGI:2180433|PMID:11891232) RGD PMID:11891232 MGI:MGI:2180433 NCBI chr 4:85,551,503...85,563,683
Ensembl chr 4:85,551,502...85,569,360
JBrowse link
G Aqp5 aquaporin 5 ISO MGI:MGI:2150059 (MGI:MGI:2180433|PMID:11891232) RGD PMID:11891232 MGI:MGI:2180433 NCBI chr 7:141,249,044...141,252,576
Ensembl chr 7:141,249,044...141,252,578
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI:MGI:88180 (MGI:MGI:1095762|PMID:9268572) RGD PMID:9268572 MGI:MGI:1095762 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO MGI:MGI:1857654|MGI:MGI:2136986 (MGI:MGI:3610441|PMID:16154126), (MGI:MGI:3701027|PMID:16854970) RGD PMID:16154126, PMID:16854970 MGI:MGI:3610441, MGI:MGI:3701027 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Col8a1 collagen type VIII alpha 1 chain ISO MGI:MGI:88464 (MGI:MGI:3587134|PMID:16051690) RGD PMID:16051690 MGI:MGI:3587134 NCBI chr11:44,877,690...45,006,203
Ensembl chr11:44,877,859...45,007,891
JBrowse link
G Col8a2 collagen type VIII alpha 2 chain ISO MGI:MGI:88463 (MGI:MGI:3587134|PMID:16051690) RGD PMID:16051690 MGI:MGI:3587134 NCBI chr 5:144,308,527...144,335,142
Ensembl chr 5:144,308,611...144,335,172
JBrowse link
G Ephb1 Eph receptor B1 ISO MGI:MGI:2677305 (MGI:MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:MGI:2675767 NCBI chr 8:110,376,954...110,813,193
Ensembl chr 8:110,376,954...110,813,000
JBrowse link
G Ephb2 Eph receptor B2 ISO MGI:MGI:2149765 (MGI:MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:MGI:2675767 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Fat1 FAT atypical cadherin 1 ISO MGI:MGI:2662293 (MGI:MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:MGI:5766588 NCBI chr16:50,372,150...50,501,716
Ensembl chr16:50,372,128...50,501,921
JBrowse link
G Gdf11 growth differentiation factor 11 ISO MGI:MGI:2449673 (MGI:MGI:3581514|PMID:15976303) RGD PMID:15976303 MGI:MGI:3581514 NCBI chr 7:3,306,863...3,315,856
Ensembl chr 7:3,306,863...3,315,856
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856276 (MGI:MGI:52587|PMID:8387379) RGD PMID:8387379 MGI:MGI:52587 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Grcc10 gene rich cluster, C10 gene ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665, PMID:23633300, PMID:24798461 NCBI chr 4:157,264,383...157,266,042
Ensembl chr 4:157,264,383...157,266,018
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO MGI:MGI:103223 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:MGI:3827087 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Mfn2 mitofusin 2 ISO MGI:MGI:1861626 (MGI:MGI:3589043|PMID:16104381) RGD PMID:16104381 MGI:MGI:3589043 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3605480 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Nf1 neurofibromin 1 ISO
ISS
IEA
MGI:MGI:1857444 (MGI:MGI:66069|PMID:7926784)
GO_REF:0000024
GO_REF:0000107
RGD
HGNC
Ensembl
PMID:7926784 GO_REF:0000024, GO_REF:0000107, MGI:MGI:66069 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Ring1 ring finger protein 1 ISO MGI:MGI:99150 (MGI:MGI:3628673|PMID:16624538) RGD PMID:16624538 MGI:MGI:3628673 NCBI chr20:3,812,287...3,815,834
Ensembl chr20:3,812,287...3,815,834
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:MGI:3693412 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Tenm3 teneurin transmembrane protein 3 ISO (PMID:22766609) RGD PMID:22766609 NCBI chr16:46,422,676...46,929,023
Ensembl chr16:46,731,403...46,926,245
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931048|MGI:MGI:2387296 (MGI:MGI:3607459|PMID:16251428) RGD PMID:16251428 MGI:MGI:3607459 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:106918|MGI:MGI:2136645 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
G Yy1 YY1 transcription factor ISO MGI:MGI:1101770 (MGI:MGI:3628673|PMID:16624538) RGD PMID:16624538 MGI:MGI:3628673 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Prom1 prominin 1 ISO
IBA
(PMID:18654668)
PMID:21873635
(MGI:MGI:3838023|PMID:19228982)
RGD PMID:18654668, PMID:19228982, PMID:21873635 MGI:MGI:3838023, RGD:13792537 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:MGI:4437581 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:MGI:5693671 NCBI chr10:102,299,593...102,576,554
Ensembl chr10:102,303,028...102,576,878
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO GO:0060219 (MGI:MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO MGI:MGI:5140723 (MGI:MGI:5014119|PMID:21646512) RGD PMID:21646512 MGI:MGI:5014119 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO
ISS
(MGI:MGI:3703484|PMID:17064680) RGD PMID:17064680, PMID:17064680 MGI:MGI:3703484, RGD:10047226 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO
IEA
MGI:MGI:3692444 (MGI:MGI:5492288|PMID:23676271)
GO_REF:0000107
RGD
Ensembl
PMID:23676271 GO_REF:0000107, MGI:MGI:5492288 NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
JBrowse link
G Notch2 notch receptor 2 ISO
IEA
MGI:MGI:3617328 (MGI:MGI:5492288|PMID:23676271)
GO_REF:0000107
RGD
Ensembl
PMID:23676271 GO_REF:0000107, MGI:MGI:5492288 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO
IEA
(MGI:MGI:5285004|PMID:21856951)
GO_REF:0000107
RGD
Ensembl
PMID:21856951 GO_REF:0000107, MGI:MGI:5285004 NCBI chr 1:163,317,281...163,328,697
Ensembl chr 1:163,317,282...163,328,591
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:2136645 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:MGI:3719969 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO
ISS
(MGI:MGI:3703484|PMID:17064680) RGD PMID:17064680, PMID:17064680 MGI:MGI:3703484, RGD:10047226 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Kera keratocan ISO UniProtKB:O60938 (MGI:MGI:1855733|PMID:10802664) RGD PMID:10802664 MGI:MGI:1855733 NCBI chr 7:38,858,062...38,865,515
Ensembl chr 7:38,858,062...38,865,515
JBrowse link
G Krt12 keratin 12 ISO
ISS
IEA
(PMID:26758872)
GO_REF:0000024
MGI:MGI:3051854 (MGI:MGI:5752087|PMID:26758872), (MGI:MGI:85415|PMID:8977471)
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:8977471, PMID:26758872 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5752087, MGI:MGI:85415 NCBI chr10:87,328,547...87,336,710
Ensembl chr10:87,328,549...87,335,823
JBrowse link
G Limk2 LIM domain kinase 2 ISO MGI:MGI:3612836 (MGI:MGI:5646594|PMID:26234751) RGD PMID:26234751 MGI:MGI:5646594 NCBI chr14:83,564,048...83,641,996
Ensembl chr14:83,573,928...83,641,892
JBrowse link
G Pax6 paired box 6 ISO
IEA
(PMID:7550230)
GO_REF:0000107
RGD
Ensembl
PMID:7550230 GO_REF:0000107 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2183192 (MGI:MGI:3610667|PMID:16186342) RGD PMID:16186342 MGI:MGI:3610667 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO MGI:MGI:3044412 (MGI:MGI:4949824|PMID:20574024) RGD PMID:20574024 MGI:MGI:4949824 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO MGI:MGI:1861722 (MGI:MGI:3700411|PMID:17184764) RGD PMID:17184764 MGI:MGI:3700411 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO MGI:MGI:107928 (MGI:MGI:3042765|PMID:14623956), (MGI:MGI:3700411|PMID:17184764) RGD PMID:14623956, PMID:17184764 MGI:MGI:3042765, MGI:MGI:3700411 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Cdk20 cyclin-dependent kinase 20 ISO MGI:MGI:6113512 (MGI:MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:MGI:1859647 (MGI:MGI:3588480|PMID:15958512) RGD PMID:15958512 MGI:MGI:3588480 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fzd5 frizzled class receptor 5 ISO MGI:MGI:3574771|MGI:MGI:3583769 (MGI:MGI:3821812|PMID:18791178) RGD PMID:18791178 MGI:MGI:3821812 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:MGI:4458412 (MGI:MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:MGI:5505384 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Nes nestin ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:187,343,109...187,352,972
Ensembl chr 2:187,344,056...187,352,969
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:MGI:1857844|MGI:MGI:1857846|MGI:MGI:1857880 (MGI:MGI:1344731|PMID:10498698), (MGI:MGI:1347482|PMID:10572050) RGD PMID:10498698, PMID:10572050 MGI:MGI:1344731, MGI:MGI:1347482 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like ISO MGI:MGI:3575541 (MGI:MGI:3530389|PMID:15661756) RGD PMID:15661756 MGI:MGI:3530389 NCBI chr 1:80,271,288...80,290,946
Ensembl chr 1:80,279,706...80,290,408
JBrowse link
G Rara retinoic acid receptor, alpha ISO MGI:MGI:97858 (MGI:MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:97856 (MGI:MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:MGI:3709664 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO MGI:MGI:4129326 (MGI:MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:MGI:5298450 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:MGI:2388066 (MGI:MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:MGI:5315747 (MGI:MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 ISO MGI:MGI:1857654 (MGI:MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:MGI:1332362 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:97490 (MGI:MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:3777403 (MGI:MGI:3775669|PMID:18056999) RGD PMID:18056999 MGI:MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Foxf2 forkhead box F2 ISO (MGI:MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:MGI:5297296 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Fzd5 frizzled class receptor 5 ISO
IEA
(MGI:MGI:3826935|PMID:18832390)
GO_REF:0000107
RGD
Ensembl
PMID:18832390 GO_REF:0000107, MGI:MGI:3826935 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:MGI:3578529 (MGI:MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:MGI:6094959 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:MGI:2682066 (MGI:MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:MGI:6094959 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:MGI:1934258 (MGI:MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:2156191|MGI:MGI:4415718 (MGI:MGI:3823171|PMID:18985738), (MGI:MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:18985738, PMID:19653321, PMID:21873635 MGI:MGI:3823171, MGI:MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1306784 (MGI:MGI:3807101|PMID:18653562)
GO_REF:0000107
RGD
Ensembl
PMID:18653562 GO_REF:0000107, MGI:MGI:3807101 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:MGI:1277166 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:MGI:98372 (MGI:MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2176682 (MGI:MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Th tyrosine hydroxylase ISO (MGI:MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:MGI:3617102 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO
IEA
MGI:MGI:1857515 (MGI:MGI:3790562|PMID:18436818)
GO_REF:0000107
RGD
Ensembl
PMID:18436818 GO_REF:0000107, MGI:MGI:3790562 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO MGI:MGI:1861722 (MGI:MGI:3608158|PMID:16207763), (MGI:MGI:3624188|PMID:16611695) RGD PMID:16207763, PMID:16611695 MGI:MGI:3608158, MGI:MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO MGI:MGI:1353450|MGI:MGI:3043947 (MGI:MGI:3608158|PMID:16207763), (MGI:MGI:3624188|PMID:16611695) RGD PMID:16207763, PMID:16611695 MGI:MGI:3608158, MGI:MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IEA
ISO
GO_REF:0000107
(PMID:25406291)
Ensembl
RGD
PMID:25406291 GO_REF:0000107 NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014
JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
JBrowse link
G Fbn2 fibrillin 2 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Foxl2 forkhead box L2 ISO MGI:MGI:3044226 (MGI:MGI:3043431|PMID:15056605) RGD PMID:15056605 MGI:MGI:3043431 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
G Mfap2 microfibril associated protein 2 ISO
IBA
(PMID:25406291)
PMID:21873635
RGD PMID:25406291, PMID:21873635 RGD:13792537 NCBI chr 5:159,534,202...159,539,750
Ensembl chr 5:159,534,202...159,539,750
JBrowse link
G Mfap5 microfibril associated protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,313,671...155,336,228
Ensembl chr 4:155,313,671...155,336,228
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:MGI:97858 (MGI:MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:MGI:3608158 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:97857 (MGI:MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:MGI:3608158 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Vax2 ventral anterior homeobox 2 IEA
ISO
GO_REF:0000107
MGI:MGI:2159246 (MGI:MGI:1349226|PMID:10595508), (MGI:MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:10595508, PMID:11830579 GO_REF:0000107, MGI:MGI:1349226, MGI:MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated ISO
IEA
MGI:MGI:2653120 (MGI:MGI:4422144|PMID:19754878)
GO_REF:0000107
RGD
Ensembl
PMID:19754878 GO_REF:0000107, MGI:MGI:4422144 NCBI chr 8:36,625,757...36,712,091
Ensembl chr 8:36,625,733...36,710,949
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
(MGI:MGI:3772525|PMID:18094249)
GO_REF:0000024
RGD
UniProt
PMID:18094249 GO_REF:0000024, MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:4415718 (MGI:MGI:4413396|PMID:19653321)
PMID:21873635
RGD PMID:19653321, PMID:21873635 MGI:MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:12692551) RGD PMID:12692551 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:MGI:1344892|PMID:10469643) RGD PMID:10469643 MGI:MGI:1344892 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 ISO MGI:MGI:2662293 (MGI:MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:MGI:5766588 NCBI chr16:50,372,150...50,501,716
Ensembl chr16:50,372,128...50,501,921
JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S ISO MGI:MGI:1856326 (MGI:MGI:3613415|PMID:14618389) RGD PMID:14618389 MGI:MGI:3613415 NCBI chr13:52,889,570...52,964,558
Ensembl chr13:52,889,737...52,964,155
JBrowse link
G Foxl2 forkhead box L2 ISO (PMID:12630957) RGD PMID:12630957 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
G Myh15 myosin, heavy chain 15 IEP RGD PMID:19948655 RGD:2317122 NCBI chr11:54,205,771...54,344,662
Ensembl chr11:54,204,775...54,344,615
JBrowse link
G Myom1 myomesin 1 IEP RGD PMID:12878677 RGD:633368 NCBI chr 9:119,353,840...119,469,196
Ensembl chr 9:119,353,840...119,468,715
JBrowse link
G Myom2 myomesin 2 IEP RGD PMID:12878677 RGD:633368 NCBI chr16:79,587,136...79,672,871
Ensembl chr16:79,587,640...79,671,719
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:MGI:1857844|MGI:MGI:1857846 (MGI:MGI:3624183|PMID:16638982), (MGI:MGI:4881620|PMID:21035439) RGD PMID:16638982, PMID:21035439 MGI:MGI:3624183, MGI:MGI:4881620 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 ISO (MGI:MGI:5585659|PMID:25030174) RGD PMID:25030174 MGI:MGI:5585659 NCBI chr 6:146,805,481...146,902,339
Ensembl chr 6:146,805,599...146,902,339
JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 ISO (PMID:23818446) RGD PMID:23818446 NCBI chr19:46,005,055...46,167,912
Ensembl chr19:46,005,277...46,101,250
JBrowse link
G Atf6 activating transcription factor 6 ISO (PMID:26029869) RGD PMID:26029869 NCBI chr13:89,053,457...89,242,531
Ensembl chr13:89,055,983...89,242,443
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO MGI:MGI:98715 (MGI:MGI:5314314|PMID:22228099) RGD PMID:22228099 MGI:MGI:5314314 NCBI chr 2:123,283,402...123,322,991
Ensembl chr 2:123,283,388...123,323,170
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 ISO (PMID:16385460) RGD PMID:16385460 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT ISO UniProtKB:P23359 (MGI:MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:MGI:3610441 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO UniProtKB:P23359 (MGI:MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:MGI:3610441 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO (MGI:MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:MGI:3610441 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO (MGI:MGI:2181740|PMID:12117821) RGD PMID:12117821 MGI:MGI:2181740 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Chrdl1 chordin-like 1 ISO
IEA
ISS
(PMID:22284829)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22284829 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:114,554,359...114,658,975
Ensembl chr  X:114,554,359...114,658,931
JBrowse link
G Cryga crystallin, gamma A ISO MGI:MGI:1857595 (MGI:MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:MGI:3042503 NCBI chr 9:71,828,308...71,855,900
Ensembl chr 9:71,835,883...71,852,113
Ensembl chr 9:71,835,883...71,852,113
JBrowse link
G Crygb crystallin, gamma B ISO MGI:MGI:1857597 (MGI:MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:MGI:3042503 NCBI chr 9:71,796,204...71,798,265
Ensembl chr 9:71,796,204...71,798,265
JBrowse link
G Crygc crystallin, gamma C ISO MGI:MGI:2176919 (MGI:MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:MGI:3042503 NCBI chr 9:71,786,246...71,788,281
Ensembl chr 9:71,786,248...71,788,281
JBrowse link
G Crygd crystallin, gamma D ISO MGI:MGI:2387106 (MGI:MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:MGI:3042503 NCBI chr 9:71,776,568...71,778,323
Ensembl chr 9:71,764,318...71,778,323
JBrowse link
G Cst3 cystatin C IEP RGD PMID:11431459 RGD:2306512 NCBI chr 3:143,219,671...143,223,544
Ensembl chr 3:143,219,686...143,223,615
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO (MGI:MGI:5291533|PMID:21858205) RGD PMID:21858205 MGI:MGI:5291533 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Foxc1 forkhead box C1 ISO (PMID:9792859)
MGI:MGI:1856705|MGI:MGI:1857869 (MGI:MGI:1261705|PMID:9635428), (MGI:MGI:1335260|PMID:10072431)
RGD PMID:9635428, PMID:9792859, PMID:10072431 MGI:MGI:1261705, MGI:MGI:1335260 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxe3 forkhead box E3 ISO
ISS
MGI:MGI:1856851 (MGI:MGI:1352262|PMID:10652278)
GO_REF:0000024
(PMID:27218149)
RGD
UniProt
PMID:10652278, PMID:27218149 GO_REF:0000024, MGI:MGI:1352262 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 ISO (PMID:29688405), (PMID:30802441)
MGI:MGI:3794302 (MGI:MGI:5646594|PMID:26234751), (MGI:MGI:6368066|PMID:30802441)
RGD PMID:26234751, PMID:29688405, PMID:30802441 MGI:MGI:5646594, MGI:MGI:6368066 NCBI chr 2:142,747,501...142,885,604
Ensembl chr 2:142,747,501...142,885,604
JBrowse link
G Gdf3 growth differentiation factor 3 ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
JBrowse link
G Hmgb1 high mobility group box 1 ISO MGI:MGI:3530901 (MGI:MGI:1339514|PMID:10391216) RGD PMID:10391216 MGI:MGI:1339514 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hsf4 heat shock transcription factor 4 ISO MGI:MGI:3056560 (MGI:MGI:3056236|PMID:15343150) RGD PMID:15343150 MGI:MGI:3056236 NCBI chr19:37,225,800...37,232,048
Ensembl chr19:37,226,186...37,231,912
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:MGI:1918742 (MGI:MGI:5314314|PMID:22228099) RGD PMID:22228099 MGI:MGI:5314314 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Mab21l1 mab-21 like 1 ISO (PMID:27103078), (PMID:30487245) RGD PMID:27103078, PMID:30487245 NCBI chr 2:145,174,876...145,177,265
Ensembl chr 2:145,174,876...145,177,265
JBrowse link
G Mab21l2 mab-21 like 2 ISO (PMID:24906020), (PMID:25719200) RGD PMID:24906020, PMID:25719200 NCBI chr 2:185,849,749...185,852,833
Ensembl chr 2:185,850,232...185,852,759
JBrowse link
G Meis1 Meis homeobox 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:103,182,178...103,321,809
Ensembl chr14:103,181,281...103,321,270
JBrowse link
G Meis2 Meis homeobox 2 ISO
IBA
MGI:MGI:97490 (MGI:MGI:2384485|PMID:12183364)
PMID:21873635
RGD PMID:12183364, PMID:21873635 MGI:MGI:2384485, RGD:13792537 NCBI chr 3:107,560,172...107,762,732
Ensembl chr 3:107,559,997...107,760,589
JBrowse link
G Meis3 Meis homeobox 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,065,617...78,079,698
Ensembl chr 1:78,068,931...78,079,862
JBrowse link
G Mug2 murinoglobulin 2 ISO (PMID:27839872) RGD PMID:27839872 NCBI chr 4:154,215,262...154,282,608
Ensembl chr 4:154,215,250...154,282,608
JBrowse link
G Pbx1 PBX homeobox 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:86,390,741...86,671,460
Ensembl chr13:86,390,741...86,451,002
JBrowse link
G Pbx2 PBX homeobox 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,357,805...4,362,730
Ensembl chr20:4,357,733...4,362,682
JBrowse link
G Pbx3 PBX homeobox 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:13,241,031...13,436,084
Ensembl chr 3:13,182,024...13,525,983
JBrowse link
G Pbx4 PBX homeobox 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:21,303,117...21,338,771
Ensembl chr16:21,303,837...21,338,771
JBrowse link
G Rab18 RAB18, member RAS oncogene family ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:59,844,781...59,876,170
Ensembl chr17:59,844,781...59,876,164
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:MGI:3604178|PMID:15994349)
(PMID:10232633)
RGD PMID:10232633, PMID:15994349 MGI:MGI:3604178 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Sall2 spalt-like transcription factor 2 ISO (PMID:24412933) RGD PMID:24412933 NCBI chr15:28,728,471...28,746,042
Ensembl chr15:28,728,140...28,746,042
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B ISO (PMID:20137777)
(MGI:MGI:4439252|PMID:20137777)
RGD PMID:20137777 MGI:MGI:4439252 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
G Sipa1l3 signal-induced proliferation-associated 1 like 3 ISO
ISS
(MGI:MGI:5697095|PMID:26231217)
GO_REF:0000024
RGD
UniProt
PMID:26231217 GO_REF:0000024, MGI:MGI:5697095 NCBI chr 1:87,260,832...87,467,846
Ensembl chr 1:87,260,835...87,468,288
JBrowse link
G Six3 SIX homeobox 3 ISO
IBA
(MGI:MGI:2182264|PMID:12050133)
PMID:21873635
(PMID:18791198)
RGD PMID:12050133, PMID:18791198, PMID:21873635 MGI:MGI:2182264, RGD:13792537 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Six6 SIX homeobox 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:95,816,749...95,821,729
Ensembl chr 6:95,816,749...95,821,729
JBrowse link
G Slc39a5 solute carrier family 39 member 5 ISO (PMID:24891338) RGD PMID:24891338 NCBI chr 7:2,813,875...2,819,917
Ensembl chr 7:2,813,875...2,819,299
JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor ISO
ISS
(MGI:MGI:5775676|PMID:27018474)
GO_REF:0000024
RGD
UniProt
PMID:27018474 GO_REF:0000024, MGI:MGI:5775676 NCBI chr 1:81,259,450...81,282,893
Ensembl chr 1:81,260,548...81,282,887
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 ISO (PMID:21194678)
(MGI:MGI:4939981|PMID:21194678)
RGD PMID:21194678 MGI:MGI:4939981 NCBI chr 6:104,718,403...104,879,611
Ensembl chr 6:104,718,512...104,877,980
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (PMID:18285410) RGD PMID:18285410 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO
ISS
(PMID:15944186)
GO_REF:0000024
RGD
UniProt
PMID:15944186 GO_REF:0000024 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 ISO (MGI:MGI:5706675|PMID:26644582) RGD PMID:26644582 MGI:MGI:5706675 NCBI chr 1:261,179,971...261,191,374
Ensembl chr 1:261,180,007...261,191,367
JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:16431952)
Ensembl
RGD
PMID:16431952 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:MGI:2388397 (MGI:MGI:2138055|PMID:11456441) RGD PMID:11456441 MGI:MGI:2138055 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:22940085 RGD:10043154 NCBI chr 5:2,257,910...2,497,429 JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:MGI:4437526 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO MGI:MGI:2676366 (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:4849309|PMID:21052544) RGD PMID:12915475, PMID:21052544 MGI:MGI:2675211, MGI:MGI:4849309 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal ISO MGI:MGI:3612338 (MGI:MGI:3610644|PMID:16043865) RGD PMID:16043865 MGI:MGI:3610644 NCBI chr10:109,528,307...109,540,675
Ensembl chr10:109,533,487...109,540,026
JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT ISO MGI:MGI:2446461 (MGI:MGI:2179933|PMID:12019334) RGD PMID:12019334 MGI:MGI:2179933 NCBI chr 5:48,303,366...48,341,571
Ensembl chr 5:48,303,366...48,341,642
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO MGI:MGI:2152779 (MGI:MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:MGI:3609280 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO MGI:MGI:3783323 (MGI:MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:MGI:3778702 NCBI chr 4:28,972,339...28,975,419
Ensembl chr 4:28,972,434...28,975,419
JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:48,437,720...48,443,421
Ensembl chr 8:48,437,918...48,443,421
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:64,797,518...64,801,587
Ensembl chr 8:64,797,518...64,800,467
JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:217,779,983...218,005,710
Ensembl chr 2:217,963,456...218,005,509
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856158 (MGI:MGI:2654287|PMID:12648492)
GO_REF:0000107
RGD
Ensembl
PMID:12648492 GO_REF:0000107, MGI:MGI:2654287 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO MGI:MGI:2670574 (MGI:MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:MGI:5607451 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Prdm1 PR/SET domain 1 ISO MGI:MGI:3605621|MGI:MGI:3608904|MGI:MGI:4881674 (MGI:MGI:4454584|PMID:20463215) RGD PMID:20463215 MGI:MGI:4454584 NCBI chr20:49,464,921...49,556,623
Ensembl chr20:49,464,919...49,556,518
JBrowse link
G Prkci protein kinase C, iota ISO MGI:MGI:3526850|MGI:MGI:3608904 (MGI:MGI:3607414|PMID:16267237) RGD PMID:16267237 MGI:MGI:3607414 NCBI chr 2:115,941,998...116,002,550
Ensembl chr 2:115,941,993...116,002,561
JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:10,277,775...10,286,243
Ensembl chr16:10,277,775...10,286,243
JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO MGI:MGI:5467544 (MGI:MGI:5462166|PMID:22605914) RGD PMID:22605914 MGI:MGI:5462166 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350
JBrowse link
G Rorb RAR-related orphan receptor B ISO
ISS
(MGI:MGI:3652638|PMID:16574740)
GO_REF:0000024
RGD
UniProt
PMID:16574740 GO_REF:0000024, MGI:MGI:3652638 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO MGI:MGI:2386674 (MGI:MGI:2654998|PMID:12651948) RGD PMID:12651948 MGI:MGI:2654998 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO MGI:MGI:2655714 (MGI:MGI:2654998|PMID:12651948) RGD PMID:12651948 MGI:MGI:2654998 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Th tyrosine hydroxylase ISO (MGI:MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:MGI:3617102 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:MGI:4397555 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931048|MGI:MGI:2387296 (MGI:MGI:3607459|PMID:16251428) RGD PMID:16251428 MGI:MGI:3607459 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,510,009...5,614,416
Ensembl chr17:5,511,385...5,614,435
JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha ISO UniProtKB:F6T226 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:109,481,352...109,621,462
Ensembl chr 8:109,482,614...109,621,408
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO
ISS
(MGI:MGI:3045481|PMID:15207851)
GO_REF:0000024
RGD
UniProt
PMID:15207851 GO_REF:0000024, MGI:MGI:3045481 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:2178753 (MGI:MGI:2680889|PMID:14625556) RGD PMID:14625556 MGI:MGI:2680889 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor ISO MGI:MGI:98354 (MGI:MGI:85697|PMID:9030684) RGD PMID:9030684 MGI:MGI:85697 NCBI chr14:99,919,485...100,104,136
Ensembl chr14:99,919,485...100,098,796
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:MGI:1856837 (MGI:MGI:4947318|PMID:21262862) RGD PMID:21262862 MGI:MGI:4947318 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Hdac1 histone deacetylase 1 ISO UniProtKB:P70288 (MGI:MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:MGI:4889029 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac2 histone deacetylase 2 ISO UniProtKB:O09106 (MGI:MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:MGI:4889029 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Inhba inhibin subunit beta A ISO
ISS
UniProtKB:Q04999 (MGI:MGI:2682175|PMID:14551263)
GO_REF:0000024
RGD
UniProt
PMID:14551263 GO_REF:0000024, MGI:MGI:2682175 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO MGI:MGI:2673694 (MGI:MGI:5608927|PMID:25224220) RGD PMID:25224220 MGI:MGI:5608927 NCBI chr 5:114,011,184...114,014,277
Ensembl chr 5:114,011,189...114,014,277
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO MGI:MGI:3693319 (MGI:MGI:3692812|PMID:17021013) RGD PMID:17021013 MGI:MGI:3692812 NCBI chr 4:82,506...109,986
NCBI chr 4:6,083,650...6,294,413
Ensembl chr 4:6,083,736...6,292,516
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO MGI:MGI:2676654 (MGI:MGI:5467663|PMID:23201579), (MGI:MGI:5608927|PMID:25224220) RGD PMID:23201579, PMID:25224220 MGI:MGI:5467663, MGI:MGI:5608927 NCBI chr 2:43,329,516...43,393,203
Ensembl chr 2:43,329,516...43,393,207
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO
ISS
(MGI:MGI:3848564|PMID:19389375)
GO_REF:0000024
RGD
UniProt
PMID:19389375 GO_REF:0000024, MGI:MGI:3848564 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 ISO MGI:MGI:95294 (MGI:MGI:85697|PMID:9030684) RGD PMID:9030684 MGI:MGI:85697 NCBI chr 6:3,105,443...3,182,977
Ensembl chr 6:3,104,861...3,182,996
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3052265|PMID:15254231)
GO_REF:0000024
RGD
UniProt
PMID:15254231 GO_REF:0000024, MGI:MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Srf serum response factor ISO MGI:MGI:2445832|MGI:MGI:3522206 (MGI:MGI:4421610|PMID:20047077) RGD PMID:20047077 MGI:MGI:4421610 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:1313057|PMID:9811866)
GO_REF:0000024
RGD
UniProt
PMID:9811866 GO_REF:0000024, MGI:MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 ISO (MGI:MGI:3772525|PMID:18094249) RGD PMID:18094249 MGI:MGI:3772525 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 ISS
ISO
GO_REF:0000024
(MGI:MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024, MGI:MGI:6359287 NCBI chr 8:53,678,777...53,743,643
Ensembl chr 8:53,678,777...53,743,642
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024, MGI:MGI:6359287 NCBI chr12:9,033,993...9,205,886
Ensembl chr12:9,034,308...9,205,905
JBrowse link
G Ninj1 ninjurin 1 ISO (MGI:MGI:4940188|PMID:19557008) RGD PMID:19557008 MGI:MGI:4940188 NCBI chr17:15,866,235...15,881,284
Ensembl chr17:15,866,237...15,881,327
JBrowse link
G Opn4 opsin 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024, MGI:MGI:6359287 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Opn5 opsin 5 ISO (MGI:MGI:6359287|PMID:30936473) RGD PMID:30936473 MGI:MGI:6359287 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Slc17a6 solute carrier family 17 member 6 ISS
ISO
GO_REF:0000024
(MGI:MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024, MGI:MGI:6359287 NCBI chr 1:106,980,463...107,038,717
Ensembl chr 1:106,998,623...107,038,704
JBrowse link
G Slc6a3 solute carrier family 6 member 3 ISS
ISO
GO_REF:0000024
(MGI:MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024, MGI:MGI:6359287 NCBI chr 1:32,323,011...32,363,983
Ensembl chr 1:32,321,580...32,363,983
JBrowse link
G Th tyrosine hydroxylase ISS
ISO
GO_REF:0000024
(MGI:MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024, MGI:MGI:6359287 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287
JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO
ISS
(MGI:MGI:3703484|PMID:17064680) RGD PMID:17064680, PMID:17064680 MGI:MGI:3703484, RGD:10047226 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:103223 (MGI:MGI:5429122|PMID:22627278)
GO_REF:0000107
RGD
Ensembl
PMID:22627278 GO_REF:0000107, MGI:MGI:5429122 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Pax6 paired box 6 ISO
IEA
(PMID:7550230)
GO_REF:0000107
RGD
Ensembl
PMID:7550230 GO_REF:0000107 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pitx2 paired-like homeodomain 2 ISO (PMID:9437321) RGD PMID:9437321 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO MGI:MGI:106918|MGI:MGI:2136645 (MGI:MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07033887.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:42,936,028...42,944,942 JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 ISO MGI:MGI:3045749|MGI:MGI:5796183 (MGI:MGI:5766584|PMID:26218911) RGD PMID:26218911 MGI:MGI:5766584 NCBI chr 3:176,438,335...176,443,864
Ensembl chr 3:176,439,199...176,443,195
JBrowse link
G Casp6 caspase 6 IEP RGD PMID:15161922 RGD:2301319 NCBI chr 2:235,341,326...235,353,715
Ensembl chr 2:235,341,365...235,353,967
Ensembl chr 2:235,341,365...235,353,967
JBrowse link
G Cdk2 cyclin dependent kinase 2 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:3,124,953...3,132,533
Ensembl chr 7:3,124,954...3,132,457
JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:70,345,971...70,352,689
Ensembl chr 7:70,349,863...70,352,418
JBrowse link
G Cdon cell adhesion associated, oncogene regulated ISO
IEA
MGI:MGI:2653120 (MGI:MGI:4422144|PMID:19754878)
GO_REF:0000107
RGD
Ensembl
PMID:19754878 GO_REF:0000107, MGI:MGI:4422144 NCBI chr 8:36,625,757...36,712,091
Ensembl chr 8:36,625,733...36,710,949
JBrowse link
G Cryaa crystallin, alpha A IEP
ISO
MGI:MGI:1858025|MGI:MGI:2653028|MGI:MGI:88516 (MGI:MGI:2154010|PMID:11687536), (MGI:MGI:3617146|PMID:16439475), (MGI:MGI:85598|PMID:9023351) RGD PMID:9023351, PMID:11687536, PMID:16439475, PMID:8187157 MGI:MGI:2154010, MGI:MGI:3617146, MGI:MGI:85598, RGD:1600991 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Cryab crystallin, alpha B ISO MGI:MGI:88515 (MGI:MGI:3617146|PMID:16439475) RGD PMID:16439475 MGI:MGI:3617146 NCBI chr 8:55,178,543...55,182,546
Ensembl chr 8:55,178,289...55,182,545
JBrowse link
G Cryba1 crystallin, beta A1 IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2753045, PMID:21873635 RGD:1298814, RGD:13792537 NCBI chr10:65,160,777...65,167,504
Ensembl chr10:65,161,152...65,167,494
JBrowse link
G Cryba2 crystallin, beta A2 ISO
IBA
MGI:MGI:4950379 (MGI:MGI:4950336|PMID:21212184)
PMID:21873635
RGD PMID:21212184, PMID:21873635 MGI:MGI:4950336, RGD:13792537 NCBI chr 9:82,151,056...82,154,266
Ensembl chr 9:82,151,057...82,154,266
JBrowse link
G Cryba4 crystallin, beta A4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:50,407,843...50,414,434
Ensembl chr12:50,407,843...50,414,432
JBrowse link
G Crybb1 crystallin, beta B1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:50,390,939...50,404,550
Ensembl chr12:50,390,940...50,404,550
JBrowse link
G Crybb2 crystallin, beta B2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:49,577,580...49,588,555
Ensembl chr12:49,578,633...49,588,555
JBrowse link
G Crybb3 crystallin, beta B3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:49,564,991...49,571,008
Ensembl chr12:49,565,992...49,571,006
JBrowse link
G Crybg3 crystallin beta-gamma domain containing 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:42,895,610...43,006,568
Ensembl chr11:42,945,084...43,005,097
JBrowse link
G Cryga crystallin, gamma A IEP
IBA
ISO
PMID:21873635
MGI:MGI:1856493|MGI:MGI:1857595 (MGI:MGI:1333159|PMID:6510713), (MGI:MGI:65639|PMID:8034315), (MGI:MGI:69851|PMID:6877261), (MGI:MGI:71783|PMID:7088001)
RGD PMID:6510713, PMID:6877261, PMID:7088001, PMID:8034315, PMID:2338125, PMID:21873635 MGI:MGI:1333159, MGI:MGI:65639, MGI:MGI:69851, MGI:MGI:71783, RGD:2303725, RGD:13792537 NCBI chr 9:71,828,308...71,855,900
Ensembl chr 9:71,835,883...71,852,113
Ensembl chr 9:71,835,883...71,852,113
JBrowse link
G Crygb crystallin, gamma B IEP
IBA
ISO
PMID:21873635
MGI:MGI:1857597|MGI:MGI:3777015 (MGI:MGI:3691890|PMID:12426373), (MGI:MGI:3776178|PMID:18172107), (MGI:MGI:81294|PMID:8626090)
RGD PMID:8626090, PMID:12426373, PMID:18172107, PMID:2338125, PMID:21873635 MGI:MGI:3691890, MGI:MGI:3776178, MGI:MGI:81294, RGD:2303725, RGD:13792537 NCBI chr 9:71,796,204...71,798,265
Ensembl chr 9:71,796,204...71,798,265
JBrowse link
G Crygc crystallin, gamma C IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2338125, PMID:21873635 RGD:2303725, RGD:13792537 NCBI chr 9:71,786,246...71,788,281
Ensembl chr 9:71,786,248...71,788,281
JBrowse link
G Crygd crystallin, gamma D IEP
IBA
ISO
PMID:21873635
MGI:MGI:1858026|MGI:MGI:3762620 (MGI:MGI:1354024|PMID:10704279), (MGI:MGI:3762268|PMID:17652744)
RGD PMID:10704279, PMID:17652744, PMID:2338125, PMID:21873635 MGI:MGI:1354024, MGI:MGI:3762268, RGD:2303725, RGD:13792537 NCBI chr 9:71,776,568...71,778,323
Ensembl chr 9:71,764,318...71,778,323
JBrowse link
G Cryge crystallin, gamma E IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2338125, PMID:21873635 RGD:2303725, RGD:13792537 NCBI chr 9:71,764,317...71,767,045 JBrowse link
G Crygf crystallin, gamma F IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2338125, PMID:21873635 RGD:2303725, RGD:13792537 NCBI chr 9:72,933,304...72,935,468
Ensembl chr 9:72,933,304...72,935,468
JBrowse link
G Crygn crystallin, gamma N IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:6,900,811...6,909,167
Ensembl chr 4:6,903,198...6,909,167
JBrowse link
G Crygs crystallin, gamma S ISO
IBA
MGI:MGI:1861635 (MGI:MGI:65639|PMID:8034315), (MGI:MGI:69851|PMID:6877261)
PMID:21873635
RGD PMID:6877261, PMID:8034315, PMID:21873635 MGI:MGI:65639, MGI:MGI:69851, RGD:13792537 NCBI chr11:81,796,891...81,802,172
Ensembl chr11:81,796,891...81,802,172
JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO MGI:MGI:2388945 (MGI:MGI:5302597|PMID:21897743) RGD PMID:21897743 MGI:MGI:5302597 NCBI chr10:59,749,250...59,772,475
Ensembl chr10:59,749,256...59,764,868
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 ISO
IEA
MGI:MGI:2680670 (MGI:MGI:2682188|PMID:14645510)
GO_REF:0000107
RGD
Ensembl
PMID:14645510 GO_REF:0000107, MGI:MGI:2682188 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Fat1 FAT atypical cadherin 1 ISO MGI:MGI:2662293 (MGI:MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:MGI:5766588 NCBI chr16:50,372,150...50,501,716
Ensembl chr16:50,372,128...50,501,921
JBrowse link
G Foxe3 forkhead box E3 ISO
ISS
(PMID:27218149)
PMID:17064680
GO_REF:0000024
(MGI:MGI:3703484|PMID:17064680)
RGD
UniProt
PMID:17064680, PMID:27218149, PMID:17064680 GO_REF:0000024, MGI:MGI:3703484, RGD:10047226 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3045749|MGI:MGI:3768912 (MGI:MGI:5447585|PMID:23136392) RGD PMID:23136392 MGI:MGI:5447585 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Gata3 GATA binding protein 3 ISO MGI:MGI:2181200 (MGI:MGI:4354418|PMID:19623612) RGD PMID:19623612 MGI:MGI:4354418 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO MGI:MGI:1857177 (MGI:MGI:1267300|PMID:9620080) RGD PMID:9620080 MGI:MGI:1267300 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gja8 gap junction protein, alpha 8 ISO MGI:MGI:1857499 (MGI:MGI:69851|PMID:6877261) RGD PMID:6877261 MGI:MGI:69851 NCBI chr 2:199,050,854...199,052,470
Ensembl chr 2:199,050,854...199,052,470
JBrowse link
G Gje1 gap junction protein, epsilon 1 ISO MGI:MGI:3529958 (MGI:MGI:3795311|PMID:18385072) RGD PMID:18385072 MGI:MGI:3795311 NCBI chr 1:8,883,767...8,887,721
Ensembl chr 1:8,883,961...8,885,967
JBrowse link
G Lim2 lens intrinsic membrane protein 2 ISO MGI:MGI:1862040 (MGI:MGI:1333159|PMID:6510713), (MGI:MGI:69851|PMID:6877261), (MGI:MGI:71783|PMID:7088001), (MGI:MGI:82332|PMID:8812411) RGD PMID:6510713, PMID:6877261, PMID:7088001, PMID:8812411 MGI:MGI:1333159, MGI:MGI:69851, MGI:MGI:71783, MGI:MGI:82332 NCBI chr 1:98,495,082...98,501,248
Ensembl chr 1:98,495,082...98,501,249
JBrowse link
G Maf MAF bZIP transcription factor ISO MGI:MGI:2148635|MGI:MGI:2148636|MGI:MGI:2148637 (MGI:MGI:1340085|PMID:10383433), (MGI:MGI:1350584|PMID:10603348), (MGI:MGI:3760711|PMID:12835653) RGD PMID:10383433, PMID:10603348, PMID:12835653 MGI:MGI:1340085, MGI:MGI:1350584, MGI:MGI:3760711 NCBI chr19:48,179,826...48,200,995
Ensembl chr19:48,194,804...48,196,748
JBrowse link
G Med1 mediator complex subunit 1 ISO
ISS
(MGI:MGI:2158098|PMID:11724781)
GO_REF:0000024
RGD
UniProt
PMID:11724781 GO_REF:0000024, MGI:MGI:2158098 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Mip major intrinsic protein of lens fiber ISO
IEA
MGI:MGI:1857105 (MGI:MGI:55175|PMID:7333462)
GO_REF:0000107
RGD
Ensembl
PMID:7333462 GO_REF:0000107, MGI:MGI:55175 NCBI chr 7:2,635,743...2,642,995
Ensembl chr 7:2,635,743...2,642,848
JBrowse link
G Nhs NHS actin remodeling regulator ISO
IBA
MGI:MGI:1861111 (MGI:MGI:64544|PMID:8282045)
PMID:21873635
RGD PMID:8282045, PMID:21873635 MGI:MGI:64544, RGD:13792537 NCBI chr  X:34,312,102...34,675,912
Ensembl chr  X:34,623,405...34,673,742
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:2156742 (MGI:MGI:69851|PMID:6877261)
GO_REF:0000107
RGD
Ensembl
PMID:6877261 GO_REF:0000107, MGI:MGI:69851 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pds5a PDS5 cohesin associated factor A ISO MGI:MGI:3722688 (MGI:MGI:3847057|PMID:19412548) RGD PMID:19412548 MGI:MGI:3847057 NCBI chr14:44,185,445...44,282,308
Ensembl chr14:44,185,446...44,280,079
JBrowse link
G Pds5b PDS5 cohesin associated factor B ISO MGI:MGI:3722688 (MGI:MGI:3847057|PMID:19412548) RGD PMID:19412548 MGI:MGI:3847057 NCBI chr12:659,995...794,042
Ensembl chr12:660,011...794,042
JBrowse link
G Pitx3 paired-like homeodomain 3 ISS
ISO
GO_REF:0000024
(MGI:MGI:3831639|PMID:19007884), (MGI:MGI:4353482|PMID:19334279)
UniProt
RGD
PMID:19007884, PMID:19334279 GO_REF:0000024, MGI:MGI:3831639, MGI:MGI:4353482 NCBI chr 1:265,886,766...265,899,947
Ensembl chr 1:265,887,230...265,899,958
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:8812486) RGD PMID:8812486 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Pygo2 pygopus family PHD finger 2 ISO MGI:MGI:3712856 (MGI:MGI:3712628|PMID:17425782) RGD PMID:17425782 MGI:MGI:3712628 NCBI chr 2:188,757,167...188,762,285
Ensembl chr 2:188,757,489...188,762,282
JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:MGI:1929788|PMID:11139622) RGD PMID:11139622 MGI:MGI:1929788 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Six5 SIX homeobox 5 ISO MGI:MGI:2148689|MGI:MGI:2148692 (MGI:MGI:1855730|PMID:10802668), (MGI:MGI:1855731|PMID:10802667) RGD PMID:10802667, PMID:10802668 MGI:MGI:1855730, MGI:MGI:1855731 NCBI chr 1:80,000,106...80,005,303
Ensembl chr 1:80,000,165...80,003,232
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:MGI:4417931 (MGI:MGI:5513052|PMID:23543054) RGD PMID:23543054 MGI:MGI:5513052 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 ISO MGI:MGI:1856684 (MGI:MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:MGI:5551670 NCBI chr 3:147,772,006...147,790,946
Ensembl chr 3:147,772,165...147,789,158
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:MGI:4440463 (MGI:MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:MGI:2151112|PMID:11641223) RGD PMID:11641223 MGI:MGI:2151112 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:MGI:2151112|PMID:11641223) RGD PMID:11641223 MGI:MGI:2151112 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1 ISO
IBA
IEA
(MGI:MGI:2673300|PMID:15037121)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15037121, PMID:21873635 GO_REF:0000107, MGI:MGI:2673300, RGD:13792537 NCBI chr 3:137,935,345...137,992,652
Ensembl chr 3:137,935,345...137,969,658
JBrowse link
G Bfsp2 beaded filament structural protein 2 ISO MGI:MGI:2671074 (MGI:MGI:2673300|PMID:15037121), (MGI:MGI:3717045|PMID:17065509) RGD PMID:15037121, PMID:17065509 MGI:MGI:2673300, MGI:MGI:3717045 NCBI chr 8:111,908,614...111,965,889
Ensembl chr 8:111,908,614...111,965,889
JBrowse link
G Crygb crystallin, gamma B ISO MGI:MGI:3777015 (MGI:MGI:3776178|PMID:18172107) RGD PMID:18172107 MGI:MGI:3776178 NCBI chr 9:71,796,204...71,798,265
Ensembl chr 9:71,796,204...71,798,265
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:3044679|MGI:MGI:3045749|MGI:MGI:95524 (MGI:MGI:3796810|PMID:18455718), (MGI:MGI:5447585|PMID:23136392) RGD PMID:18455718, PMID:23136392 MGI:MGI:3796810, MGI:MGI:5447585 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:MGI:95523 (MGI:MGI:3796810|PMID:18455718) RGD PMID:18455718 MGI:MGI:3796810 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3045749|MGI:MGI:3768912|MGI:MGI:97385 (MGI:MGI:5447585|PMID:23136392) RGD PMID:23136392 MGI:MGI:5447585 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:MGI:2386105 (MGI:MGI:4888440|PMID:21118511) RGD PMID:21118511 MGI:MGI:4888440 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Tmod1 tropomodulin 1 ISO
IEA
UniProtKB:Q6NVD9 (MGI:MGI:5475090|PMID:23144950)
GO_REF:0000107
RGD
Ensembl
PMID:23144950 GO_REF:0000107, MGI:MGI:5475090 NCBI chr 5:61,635,244...61,712,052
Ensembl chr 5:61,657,507...61,712,051
JBrowse link
G Vim vimentin ISO
IEA
(MGI:MGI:2673300|PMID:15037121)
GO_REF:0000107
RGD
Ensembl
PMID:15037121 GO_REF:0000107, MGI:MGI:2673300 NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crygd crystallin, gamma D IDA
ISO
MGI:MGI:3762620 (MGI:MGI:3762268|PMID:17652744) RGD PMID:17652744, PMID:8575616 MGI:MGI:3762268, RGD:1601018 NCBI chr 9:71,776,568...71,778,323
Ensembl chr 9:71,764,318...71,778,323
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 ISO (MGI:MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:MGI:3720408 NCBI chr 7:11,201,690...11,213,614
Ensembl chr 7:11,201,690...11,213,613
JBrowse link
G Kdm5b lysine demethylase 5B IEP RGD PMID:24142921 RGD:9587771 NCBI chr13:51,384,371...51,455,392
Ensembl chr13:51,384,389...51,455,357
JBrowse link
G Maf MAF bZIP transcription factor IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:2148636|MGI:MGI:2148637 (MGI:MGI:1340085|PMID:10383433), (MGI:MGI:3760711|PMID:12835653)
Ensembl
RGD
PMID:10383433, PMID:12835653, PMID:21873635 GO_REF:0000107, MGI:MGI:1340085, MGI:MGI:3760711, RGD:13792537 NCBI chr19:48,179,826...48,200,995
Ensembl chr19:48,194,804...48,196,748
JBrowse link
G Nf2 neurofibromin 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:4457460|PMID:20181838)
Ensembl
RGD
PMID:20181838 GO_REF:0000107, MGI:MGI:4457460 NCBI chr14:84,996,905...85,088,547
Ensembl chr14:84,996,905...85,088,523
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 ISO MGI:MGI:1100860 (MGI:MGI:5447585|PMID:23136392) RGD PMID:23136392 MGI:MGI:5447585 NCBI chr 1:139,890,537...140,262,503
Ensembl chr 1:139,890,560...140,262,503
JBrowse link
G Pitx3 paired-like homeodomain 3 ISO (MGI:MGI:3831639|PMID:19007884) RGD PMID:19007884 MGI:MGI:3831639 NCBI chr 1:265,886,766...265,899,947
Ensembl chr 1:265,887,230...265,899,958
JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:MGI:2181466|PMID:12072567) RGD PMID:12072567 MGI:MGI:2181466 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Skil SKI-like proto-oncogene ISO (MGI:MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:MGI:3720408 NCBI chr 2:115,862,932...115,891,304
Ensembl chr 2:115,866,701...115,891,097
JBrowse link
G Slc7a11 solute carrier family 7 member 11 IEP RGD PMID:16043861 RGD:2315033 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link
G Smad3 SMAD family member 3 ISO (MGI:MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:MGI:3720408 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tdrd7 tudor domain containing 7 ISO
ISS
(PMID:21436445)
GO_REF:0000024
(MGI:MGI:4943339|PMID:21436445)
RGD
UniProt
PMID:21436445 GO_REF:0000024, MGI:MGI:4943339 NCBI chr 5:61,557,909...61,631,719
Ensembl chr 5:61,564,864...61,631,710
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (MGI:MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:MGI:3720408 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 ISO (MGI:MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:MGI:3525751 NCBI chr 9:67,234,612...67,284,504
Ensembl chr 9:67,234,303...67,282,600
JBrowse link
G Atf4 activating transcription factor 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:1339872|PMID:10096021), (MGI:MGI:1859108|PMID:10885750), (MGI:MGI:2158533|PMID:11806972)
UniProt
RGD
PMID:10096021, PMID:10885750, PMID:11806972 GO_REF:0000024, MGI:MGI:1339872, MGI:MGI:1859108, MGI:MGI:2158533 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:3665275|MGI:MGI:3777403 (MGI:MGI:3655912|PMID:16799046), (MGI:MGI:3775669|PMID:18056999) RGD PMID:16799046, PMID:18056999 MGI:MGI:3655912, MGI:MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Crygb crystallin, gamma B ISO MGI:MGI:1857597 (MGI:MGI:3691890|PMID:12426373), (MGI:MGI:81294|PMID:8626090) RGD PMID:8626090, PMID:12426373 MGI:MGI:3691890, MGI:MGI:81294 NCBI chr 9:71,796,204...71,798,265
Ensembl chr 9:71,796,204...71,798,265
JBrowse link
G Epha2 Eph receptor A2 ISO (MGI:MGI:3831440|PMID:18948590) RGD PMID:18948590 MGI:MGI:3831440 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194)
(MGI:MGI:1332720|PMID:10080188)
RGD PMID:10080188, PMID:11850194 MGI:MGI:1332720 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 ISO MGI:MGI:1856684 (MGI:MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:MGI:5551670 NCBI chr 3:147,772,006...147,790,946
Ensembl chr 3:147,772,165...147,789,158
JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO
IEA
MGI:MGI:1857137 (MGI:MGI:1316914|PMID:9851982)
GO_REF:0000107
RGD
Ensembl
PMID:9851982 GO_REF:0000107, MGI:MGI:1316914 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(MGI:MGI:4818711|PMID:20579985)
GO_REF:0000107
RGD
Ensembl
PMID:20579985 GO_REF:0000107, MGI:MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO MGI:MGI:98364 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr13:84,075,316...84,217,368
Ensembl chr13:84,083,632...84,217,366
JBrowse link
G Six3 SIX homeobox 3 ISO MGI:MGI:3693322 (MGI:MGI:3692850|PMID:17066077) RGD PMID:17066077 MGI:MGI:3692850 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:101898 (MGI:MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:MGI:3701404 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:1888387 (MGI:MGI:1347707|PMID:10571739) RGD PMID:10571739 MGI:MGI:1347707 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member ISO MGI:MGI:4359826 (MGI:MGI:4358852|PMID:19365570) RGD PMID:19365570 MGI:MGI:4358852 NCBI chr 2:226,563,050...226,679,449
Ensembl chr 2:226,563,050...226,679,438
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:3045749|MGI:MGI:3696062 (MGI:MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cryaa crystallin, alpha A ISO MGI:MGI:1858023|MGI:MGI:3665274|MGI:MGI:3665275 (MGI:MGI:3655912|PMID:16799046), (MGI:MGI:82388|PMID:8812430) RGD PMID:8812430, PMID:16799046 MGI:MGI:3655912, MGI:MGI:82388 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148567|MGI:MGI:3045749 (MGI:MGI:3603687|PMID:16102745)
GO_REF:0000107
RGD
Ensembl
PMID:16102745 GO_REF:0000107, MGI:MGI:3603687 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:MGI:1933072|PMID:11290300) RGD PMID:11290300 MGI:MGI:1933072 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Lctl lactase-like ISO (MGI:MGI:6274960|PMID:29425878) RGD PMID:29425878 MGI:MGI:6274960 NCBI chr 8:69,070,340...69,090,405
Ensembl chr 8:69,070,994...69,086,992
JBrowse link
G Meis1 Meis homeobox 1 ISO MGI:MGI:3029063 (MGI:MGI:3028436|PMID:14713950) RGD PMID:14713950 MGI:MGI:3028436 NCBI chr14:103,182,178...103,321,809
Ensembl chr14:103,181,281...103,321,270
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3605480 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO MGI:MGI:3605481 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr11:57,897,879...57,995,193
Ensembl chr11:57,897,879...57,993,548
JBrowse link
G Pitx3 paired-like homeodomain 3 ISO
ISS
(MGI:MGI:4353482|PMID:19334279)
GO_REF:0000024
RGD
UniProt
PMID:19334279 GO_REF:0000024, MGI:MGI:4353482 NCBI chr 1:265,886,766...265,899,947
Ensembl chr 1:265,887,230...265,899,958
JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:MGI:1332720|PMID:10080188) RGD PMID:10080188 MGI:MGI:1332720 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:MGI:3693412 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:2137412 (MGI:MGI:1201714|PMID:9512512) RGD PMID:9512512 MGI:MGI:1201714
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tdrd7 tudor domain containing 7 ISO
ISS
(PMID:21436445)
GO_REF:0000024
(MGI:MGI:4943339|PMID:21436445)
RGD
UniProt
PMID:21436445 GO_REF:0000024, MGI:MGI:4943339 NCBI chr 5:61,557,909...61,631,719
Ensembl chr 5:61,564,864...61,631,710
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:2176682 (MGI:MGI:1329246|PMID:9918694), (MGI:MGI:3774683|PMID:18224708) RGD PMID:9918694, PMID:18224708 MGI:MGI:1329246, MGI:MGI:3774683 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO
ISS
(MGI:MGI:5316576|PMID:21875655)
GO_REF:0000024
RGD
UniProt
PMID:21875655 GO_REF:0000024, MGI:MGI:5316576 NCBI chr19:33,160,180...33,163,821
Ensembl chr19:33,160,180...33,163,821
JBrowse link
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dio3 iodothyronine deiodinase 3 ISO (MGI:MGI:4441081|PMID:20203194) RGD PMID:20203194 MGI:MGI:4441081 NCBI chr 6:134,627,278...134,629,139
Ensembl chr 6:134,627,278...134,629,138
JBrowse link
G Thrb thyroid hormone receptor beta IEA
ISO
GO_REF:0000107
(MGI:MGI:4441081|PMID:20203194)
Ensembl
RGD
PMID:20203194 GO_REF:0000107, MGI:MGI:4441081 NCBI chr15:8,890,578...9,239,815
Ensembl chr15:8,890,578...9,086,282
JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISS
ISO
PMID:16199865
(MGI:MGI:1352262|PMID:10652278), (MGI:MGI:1861492|PMID:10890982), (MGI:MGI:3603877|PMID:16199865)
RGD PMID:10652278, PMID:10890982, PMID:16199865, PMID:16199865 MGI:MGI:1352262, MGI:MGI:1861492, MGI:MGI:3603877, RGD:10047273 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Spred1 sprouty-related, EVH1 domain containing 1 ISO (MGI:MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:MGI:6414698 NCBI chr 3:108,795,337...108,861,650
Ensembl chr 3:108,795,235...108,857,556
JBrowse link
G Spred2 sprouty-related, EVH1 domain containing 2 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:6414698|PMID:29501879)
UniProt
Ensembl
RGD
PMID:29501879 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6414698 NCBI chr14:104,268,362...104,290,206
Ensembl chr14:104,191,517...104,290,456
JBrowse link
G Spred3 sprouty-related, EVH1 domain containing 3 ISO (MGI:MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:MGI:6414698 NCBI chr 1:88,101,213...88,112,719
Ensembl chr 1:88,103,719...88,112,683
JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 ISO (MGI:MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:MGI:6414698 NCBI chr 2:124,400,689...124,405,331
Ensembl chr 2:124,400,679...124,405,331
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 ISO (MGI:MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:MGI:6414698 NCBI chr15:90,172,769...90,177,823
Ensembl chr15:90,172,975...90,175,802
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator ISO
IEA
MGI:MGI:1857430 (MGI:MGI:1336407|PMID:10321489)
GO_REF:0000107
RGD
Ensembl
PMID:10321489 GO_REF:0000107, MGI:MGI:1336407 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:MGI:3054837 (MGI:MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:MGI:3054140 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:MGI:3052661|MGI:MGI:4841554 (MGI:MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin like 7 ISO (PMID:25622036) RGD PMID:25622036 NCBI chr 5:165,311,794...165,318,361
Ensembl chr 5:165,312,130...165,316,652
JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO (PMID:18816825) RGD PMID:18816825 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 ISO MGI:MGI:2159015 (MGI:MGI:5288596|PMID:21441919)
(PMID:21441919)
RGD PMID:21441919 MGI:MGI:5288596 NCBI chr20:27,082,961...27,083,410
Ensembl chr20:27,082,961...27,083,410
JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 7:41,114,606...41,223,138
Ensembl chr 7:41,114,697...41,220,579
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 IEP RGD PMID:16079002 RGD:2317729 NCBI chr  X:157,236,400...157,312,028
Ensembl chr  X:157,239,306...157,312,028
JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16079002 RGD:2317729 NCBI chr13:50,091,644...50,153,808
Ensembl chr13:50,091,430...50,153,823
JBrowse link
G Bsg basigin (Ok blood group) ISS
ISO
GO_REF:0000024
(MGI:MGI:1888850|PMID:10967074), (MGI:MGI:1932603|PMID:11273674), (MGI:MGI:3610672|PMID:11853760)
UniProt
RGD
PMID:10967074, PMID:11273674, PMID:11853760 GO_REF:0000024, MGI:MGI:1888850, MGI:MGI:1932603, MGI:MGI:3610672 NCBI chr 7:12,875,536...12,882,753
Ensembl chr 7:12,875,537...12,882,753
JBrowse link
G Casp2 caspase 2 IEP RGD PMID:9809666 RGD:4107085 NCBI chr 4:71,652,358...71,670,228
Ensembl chr 4:71,652,354...71,670,239
JBrowse link
G Gpm6a glycoprotein m6a ISO
ISS
(MGI:MGI:3811956|PMID:18776950)
GO_REF:0000024
RGD
UniProt
PMID:18776950 GO_REF:0000024, MGI:MGI:3811956 NCBI chr16:39,367,697...39,719,292
Ensembl chr16:39,367,692...39,719,187
JBrowse link
G Optn optineurin IEP RGD PMID:17687037 RGD:7800681 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389
JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:12401445 RGD:729595 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 ISO (MGI:MGI:3694624|PMID:17089410) RGD PMID:17089410 MGI:MGI:3694624 NCBI chr10:66,942,363...67,051,672
Ensembl chr10:66,942,398...67,048,308
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:2631392 RGD:9585660 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:106,980,463...107,038,717
Ensembl chr 1:106,998,623...107,038,704
JBrowse link
G Slc17a7 solute carrier family 17 member 7 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:101,161,265...101,172,292
Ensembl chr 1:101,161,252...101,173,174
JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 7:30,215,231...30,274,993
Ensembl chr 7:30,216,104...30,274,984
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO
IEA
(PMID:18816825)
GO_REF:0000107
RGD
Ensembl
PMID:18816825 GO_REF:0000107 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO (PMID:18816825) RGD PMID:18816825 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO MGI:MGI:5469314 (MGI:MGI:5466629|PMID:23129809) RGD PMID:23129809 MGI:MGI:5466629 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO
IEA
MGI:MGI:1861722 (MGI:MGI:3624188|PMID:16611695)
GO_REF:0000107
RGD
Ensembl
PMID:16611695 GO_REF:0000107, MGI:MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO
IEA
MGI:MGI:1353450 (MGI:MGI:3624188|PMID:16611695)
GO_REF:0000107
RGD
Ensembl
PMID:16611695 GO_REF:0000107, MGI:MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:4439459|PMID:20150232)
GO_REF:0000024
RGD
UniProt
PMID:20150232 GO_REF:0000024, MGI:MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3521833 (MGI:MGI:3513737|PMID:15569927) RGD PMID:15569927 MGI:MGI:3513737 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194) RGD PMID:11850194 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 ISO (MGI:MGI:2136715|PMID:11458394) RGD PMID:11458394 MGI:MGI:2136715 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:4439459|PMID:20150232)
GO_REF:0000024
RGD
UniProt
PMID:20150232 GO_REF:0000024, MGI:MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5316576|PMID:21875655)
Ensembl
UniProt
RGD
PMID:21875655 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5316576 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5316576|PMID:21875655)
Ensembl
UniProt
RGD
PMID:21875655 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5316576 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO
ISS
(PMID:22527307)
PMID:16199865
(MGI:MGI:1352262|PMID:10652278), (MGI:MGI:3603877|PMID:16199865)
RGD PMID:10652278, PMID:16199865, PMID:22527307, PMID:16199865, PMID:22527307 MGI:MGI:1352262, MGI:MGI:3603877, RGD:10047273, RGD:10047255 NCBI chr 5:133,724,796...133,725,656
Ensembl chr 5:133,724,796...133,725,656
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO
ISS
(MGI:MGI:3797299|PMID:18423449)
GO_REF:0000024
RGD
UniProt
PMID:18423449 GO_REF:0000024, MGI:MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 ISS
ISO
GO_REF:0000024
(PMID:29501879)
UniProt
RGD
PMID:29501879 GO_REF:0000024 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO (MGI:MGI:3604916|PMID:16162653) RGD PMID:16162653 MGI:MGI:3604916 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:235,341,326...235,353,715
Ensembl chr 2:235,341,365...235,353,967
Ensembl chr 2:235,341,365...235,353,967
JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BAF chromatin remodeling complex subunit BCL11B ISO MGI:MGI:2663971 (MGI:MGI:2662810|PMID:12717433) RGD PMID:12717433 MGI:MGI:2662810 NCBI chr 6:131,834,097...131,927,251
Ensembl chr 6:131,834,097...131,926,272
JBrowse link
G Fzd5 frizzled class receptor 5 IEA
ISO
GO_REF:0000107
MGI:MGI:3574771|MGI:MGI:3583769 (MGI:MGI:3821812|PMID:18791178), (MGI:MGI:3826935|PMID:18832390)
Ensembl
RGD
PMID:18791178, PMID:18832390 GO_REF:0000107, MGI:MGI:3821812, MGI:MGI:3826935 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Klf4 Kruppel like factor 4 ISO MGI:MGI:2183917|MGI:MGI:3045749 (MGI:MGI:3697243|PMID:17060454) RGD PMID:17060454 MGI:MGI:3697243 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:11120573 RGD:2303744 NCBI chr11:71,242,973...71,285,217
Ensembl chr11:71,243,334...71,284,939
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:MGI:1931047 (MGI:MGI:1339868|PMID:10229225) RGD PMID:10229225 MGI:MGI:1339868 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 ISO MGI:MGI:99702 (MGI:MGI:3692135|PMID:15955981) RGD PMID:15955981 MGI:MGI:3692135 NCBI chr20:5,609,620...5,618,899
Ensembl chr20:5,609,625...5,618,260
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
MGI:MGI:1097161 (MGI:MGI:3692135|PMID:15955981)
GO_REF:0000107
RGD
Ensembl
PMID:15955981 GO_REF:0000107, MGI:MGI:3692135 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 ISO MGI:MGI:96683 (MGI:MGI:5318610|PMID:22426483) RGD PMID:22426483 MGI:MGI:5318610 NCBI chr12:9,033,993...9,205,886
Ensembl chr12:9,034,308...9,205,905
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO MGI:MGI:3590648 (MGI:MGI:3614611|PMID:16466397) RGD PMID:16466397 MGI:MGI:3614611 NCBI chr11:36,474,028...36,479,947
Ensembl chr11:36,474,840...36,479,868
JBrowse link
G Kdr kinase insert domain receptor ISO MGI:MGI:95558 (MGI:MGI:5318610|PMID:22426483) RGD PMID:22426483 MGI:MGI:5318610 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183
JBrowse link
G Mir23a microRNA 23a ISO (MGI:MGI:5516374|PMID:24101522) RGD PMID:24101522 MGI:MGI:5516374 NCBI chr19:25,318,582...25,318,656
Ensembl chr19:25,318,582...25,318,656
JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:MGI:3054837 (MGI:MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:MGI:3054140 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IEA
ISO
GO_REF:0000107
(PMID:25406291)
Ensembl
RGD
PMID:25406291 GO_REF:0000107 NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014
JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
JBrowse link
G Mfap2 microfibril associated protein 2 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 5:159,534,202...159,539,750
Ensembl chr 5:159,534,202...159,539,750
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc66 coiled-coil domain containing 66 ISO MGI:MGI:3893603 (MGI:MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:MGI:5141557 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:2675211|PMID:12915475), (MGI:MGI:3051713|PMID:15316081), (MGI:MGI:3690408|PMID:16885194) RGD PMID:12915475, PMID:15316081, PMID:16885194 MGI:MGI:2675211, MGI:MGI:3051713, MGI:MGI:3690408 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Dscam DS cell adhesion molecule ISO
IEA
MGI:MGI:3761008 (MGI:MGI:3768917|PMID:18216855)
GO_REF:0000107
RGD
Ensembl
PMID:18216855 GO_REF:0000107, MGI:MGI:3768917 NCBI chr11:37,004,776...37,599,866
Ensembl chr11:37,004,902...37,253,776
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO MGI:MGI:2668595 (MGI:MGI:1334014|PMID:10097103) RGD PMID:10097103 MGI:MGI:1334014 NCBI chr16:81,153,489...81,165,442
Ensembl chr16:81,153,489...81,165,442
JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin-dependent kinase inhibitor 1B ISO MGI:MGI:104564 (MGI:MGI:1309707|PMID:9784491) RGD PMID:9784491 MGI:MGI:1309707 NCBI chr 4:168,689,043...168,694,159
Ensembl chr 4:168,689,163...168,693,964
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C ISO MGI:MGI:104565 (MGI:MGI:1309707|PMID:9784491) RGD PMID:9784491 MGI:MGI:1309707 NCBI chr 1:216,661,067...216,663,791
Ensembl chr 1:216,661,080...216,663,721
JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 ISO (MGI:MGI:5314555|PMID:22323600) RGD PMID:22323600 MGI:MGI:5314555 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO
ISS
(MGI:MGI:3691257|PMID:17075007)
GO_REF:0000024
RGD
UniProt
PMID:17075007 GO_REF:0000024, MGI:MGI:3691257 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:MGI:4837018|PMID:20890044) RGD PMID:20890044 MGI:MGI:4837018 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
G Vsx2 visual system homeobox 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:108,285,031...108,308,588
Ensembl chr 6:108,285,822...108,308,587
JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 ISO (MGI:MGI:5523751|PMID:23932931) RGD PMID:23932931 MGI:MGI:5523751 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor ISO (MGI:MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:MGI:2155023 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
G Cntf ciliary neurotrophic factor ISO
IEA
(MGI:MGI:2155023|PMID:11747369)
GO_REF:0000107
RGD
Ensembl
PMID:11747369 GO_REF:0000107, MGI:MGI:2155023 NCBI chr 1:229,599,009...229,601,032
Ensembl chr 1:229,599,009...229,601,032
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:MGI:2155023 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO
IEA
MGI:MGI:2179948 (MGI:MGI:3603700|PMID:15579149)
GO_REF:0000107
RGD
Ensembl
PMID:15579149 GO_REF:0000107, MGI:MGI:3603700 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Actb actin, beta IEP RGD PMID:22916200 RGD:9587758 NCBI chr12:13,715,843...13,718,813
Ensembl chr12:13,715,843...13,718,841
JBrowse link
G Agtpbp1 ATP/GTP binding protein 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,510,009...5,614,416
Ensembl chr17:5,511,385...5,614,435
JBrowse link
G Ahi1 Abelson helper integration site 1 ISO MGI:MGI:4360696 (MGI:MGI:4461813|PMID:20592197) RGD PMID:20592197 MGI:MGI:4461813 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO MGI:MGI:1857951 (MGI:MGI:3699582|PMID:10982921) RGD PMID:10982921 MGI:MGI:3699582 NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
MGI:MGI:1857429 (MGI:MGI:1277631|PMID:9699561)
GO_REF:0000107
RGD
Ensembl
PMID:9699561 GO_REF:0000107, MGI:MGI:1277631 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:17069773 RGD:2289001 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO MGI:MGI:2158497 (MGI:MGI:2654391|PMID:12654290) RGD PMID:12654290 MGI:MGI:2654391 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IEP RGD PMID:10482474 RGD:5129487 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G C3 complement C3 ISO (MGI:MGI:5883383|PMID:28057640) RGD PMID:28057640 MGI:MGI:5883383 NCBI chr 9:9,721,137...9,747,084
Ensembl chr 9:9,721,105...9,747,167
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO MGI:MGI:3605845 (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr  X:15,712,709...15,741,135
Ensembl chr  X:15,712,713...15,741,103
JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Cfd complement factor D ISO (MGI:MGI:5883383|PMID:28057640) RGD PMID:28057640 MGI:MGI:5883383 NCBI chr 7:12,634,216...12,635,939
Ensembl chr 7:12,634,216...12,635,943
JBrowse link
G Cfh complement factor H ISO (MGI:MGI:3760334|PMID:17921253), (MGI:MGI:5883383|PMID:28057640), (MGI:MGI:6304909|PMID:30705315) RGD PMID:17921253, PMID:28057640, PMID:30705315 MGI:MGI:3760334, MGI:MGI:5883383, MGI:MGI:6304909 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO (PMID:15300250) RGD PMID:15300250 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Clcn2 chloride voltage-gated channel 2 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr11:82,862,664...82,876,165
Ensembl chr11:83,883,879...83,897,394
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO MGI:MGI:1856959 (MGI:MGI:3695117|PMID:15565184), (MGI:MGI:4849309|PMID:21052544) RGD PMID:15565184, PMID:21052544 MGI:MGI:3695117, MGI:MGI:4849309 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:MGI:5315300|PMID:22447858), (MGI:MGI:5608935|PMID:25147295) RGD PMID:22447858, PMID:25147295 MGI:MGI:5315300, MGI:MGI:5608935 NCBI chr13:56,270,519...56,462,893
Ensembl chr13:56,270,781...56,462,834
JBrowse link
G Crx cone-rod homeobox ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:77,744,593...77,758,913
Ensembl chr 1:77,745,288...77,750,960
JBrowse link
G Dcx doublecortin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:115,098,675...115,175,515
Ensembl chr  X:115,098,675...115,175,299
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO
ISS
(MGI:MGI:3848562|PMID:19389377)
GO_REF:0000024
RGD
UniProt
PMID:19389377 GO_REF:0000024, MGI:MGI:3848562 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18778704 RGD:7175073 NCBI chr 1:214,278,296...214,282,818
Ensembl chr 1:214,278,296...214,281,483
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IEP RGD PMID:23954924 RGD:11251759 NCBI chr17:20,090,136...20,182,332
Ensembl chr17:20,090,246...20,182,206
JBrowse link
G Gdnf glial cell derived neurotrophic factor IEP RGD PMID:16650834 RGD:2324945 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Gnb1 G protein subunit beta 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:172,914,025...172,981,403
Ensembl chr 5:172,934,990...172,979,986
JBrowse link
G Grm6 glutamate metabotropic receptor 6 ISO MGI:MGI:3605835 (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr10:36,345,503...36,363,416
Ensembl chr10:36,345,939...36,360,665
JBrowse link
G Grn granulin precursor ISO MGI:MGI:3762618 (MGI:MGI:6101836|PMID:28728022) RGD PMID:28728022 MGI:MGI:6101836 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Hpca hippocalcin IEP RGD PMID:7789406 RGD:9686441 NCBI chr 5:147,295,124...147,305,757
Ensembl chr 5:147,294,820...147,303,346
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO MGI:MGI:2158690 (MGI:MGI:3831471|PMID:18940586) RGD PMID:18940586 MGI:MGI:3831471 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Il4 interleukin 4 IEP RGD PMID:23070471 RGD:7829830 NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 4:56,478,383...56,493,987
Ensembl chr 4:56,478,384...56,493,923
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 8:117,346,983...117,351,619
Ensembl chr 8:117,347,029...117,351,610
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO MGI:MGI:3580706 (MGI:MGI:3580691|PMID:15345036) RGD PMID:15345036 MGI:MGI:3580691 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
G Lama1 laminin subunit alpha 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 9:115,916,907...116,042,123
Ensembl chr 9:115,916,907...116,042,123
JBrowse link
G Lamb2 laminin subunit beta 2 ISO
IEA
MGI:MGI:1344394 (MGI:MGI:4454394|PMID:19907020)
GO_REF:0000107
RGD
Ensembl
PMID:19907020 GO_REF:0000107, MGI:MGI:4454394 NCBI chr 8:117,268,335...117,280,517
Ensembl chr 8:117,268,337...117,280,517
JBrowse link
G Lamc3 laminin subunit gamma 3 ISO MGI:MGI:99916 (MGI:MGI:4454394|PMID:19907020) RGD PMID:19907020 MGI:MGI:4454394 NCBI chr 3:9,265,407...9,327,107
Ensembl chr 3:9,267,122...9,326,993
JBrowse link
G Lhx1 LIM homeobox 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lhx2 LIM homeobox 2 ISO MGI:MGI:97490 (MGI:MGI:3836385|PMID:19146846) RGD PMID:19146846 MGI:MGI:3836385 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Lif LIF, interleukin 6 family cytokine IDA RGD PMID:16643897 RGD:2326157 NCBI chr14:84,482,652...84,500,574
Ensembl chr14:84,482,674...84,500,642
JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:32,379,431...32,429,917
Ensembl chr 1:32,379,432...32,429,917
JBrowse link
G Max MYC associated factor X IEP RGD PMID:14603520 RGD:2316820 NCBI chr 6:99,984,260...100,011,460
Ensembl chr 6:99,984,260...100,011,388
JBrowse link
G Mdm1 Mdm1 nuclear protein ISO
IBA
MGI:MGI:2664154 (MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr 7:61,165,652...61,200,865
Ensembl chr 7:61,165,640...61,200,879
JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 3:121,235,230...121,340,932
Ensembl chr 3:121,235,119...121,342,444
JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 8:48,437,720...48,443,421
Ensembl chr 8:48,437,918...48,443,421
JBrowse link
G Mir183 microRNA 183 ISO MGI:MGI:2676846|MGI:MGI:3619440 (MGI:MGI:5469752|PMID:23341629), (MGI:MGI:6108693|PMID:28819115) RGD PMID:23341629, PMID:28819115 MGI:MGI:5469752, MGI:MGI:6108693 NCBI chr 4:57,463,569...57,463,678
Ensembl chr 4:57,463,569...57,463,678
JBrowse link
G Mir96 microRNA 96 ISO MGI:MGI:2676846|MGI:MGI:2676847 (MGI:MGI:5469752|PMID:23341629), (MGI:MGI:6108693|PMID:28819115) RGD PMID:23341629, PMID:28819115 MGI:MGI:5469752, MGI:MGI:6108693 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:16899069 RGD:2317091 NCBI chr 5:75,392,790...75,498,694
Ensembl chr 5:75,392,790...75,498,694
JBrowse link
G Myh10 myosin heavy chain 10 IEA
ISO
GO_REF:0000107
MGI:MGI:2386445 (MGI:MGI:1099556|PMID:9356462), (MGI:MGI:1933038|PMID:11283949)
Ensembl
RGD
PMID:9356462, PMID:11283949 GO_REF:0000107, MGI:MGI:1099556, MGI:MGI:1933038 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3605480 (MGI:MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:MGI:3604842 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Neurod4 neuronal differentiation 4 IEP RGD PMID:15345241 RGD:2311603 NCBI chr 7:9,699,964...9,712,067
Ensembl chr 7:9,699,961...9,711,928
JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:16639026 RGD:7771562 NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:MGI:3839506 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:MGI:2176490|MGI:MGI:2176560 (MGI:MGI:2151063|PMID:11997145), (MGI:MGI:3624573|PMID:16702404) RGD PMID:11997145, PMID:16702404 MGI:MGI:2151063, MGI:MGI:3624573 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 ISO MGI:MGI:1346317 (MGI:MGI:3624051|PMID:12407160), (MGI:MGI:4849309|PMID:21052544) RGD PMID:12407160, PMID:21052544 MGI:MGI:3624051, MGI:MGI:4849309 NCBI chr 8:64,797,518...64,801,587
Ensembl chr 8:64,797,518...64,800,467
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:MGI:5619875|PMID:25542970) RGD PMID:25542970 MGI:MGI:5619875 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:15505078 RGD:1547836 NCBI chr11:74,717,600...74,793,902
Ensembl chr11:74,720,254...74,793,803
JBrowse link
G Pax4 paired box 4 IEP RGD PMID:19012751 RGD:2311636 NCBI chr 4:55,735,640...55,753,461
Ensembl chr 4:55,735,682...55,740,627
JBrowse link
G Pax6 paired box 6 IEP
IEA
ISO
GO_REF:0000107
MGI:MGI:96785 (MGI:MGI:3836385|PMID:19146846)
Ensembl
RGD
PMID:19146846, PMID:19012751 GO_REF:0000107, MGI:MGI:3836385, RGD:2311636 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pde6a phosphodiesterase 6A ISO
IBA
(MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr18:56,544,652...56,617,480
Ensembl chr18:56,544,652...56,617,480
JBrowse link
G Pde6b phosphodiesterase 6B ISO
IBA
(MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr14:2,328,690...2,371,913
Ensembl chr14:2,328,750...2,371,883
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO MGI:MGI:2670574 (MGI:MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:MGI:5607451 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Pfdn5 prefoldin subunit 5 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 7:143,924,662...143,929,400
Ensembl chr 7:143,924,662...143,929,397
JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO MGI:MGI:2176272|MGI:MGI:3582493 (MGI:MGI:3621691|PMID:9630743), (MGI:MGI:80981|PMID:8637595) RGD PMID:8637595, PMID:9630743 MGI:MGI:3621691, MGI:MGI:80981 NCBI chr19:33,160,180...33,163,821
Ensembl chr19:33,160,180...33,163,821
JBrowse link
G Prph2 peripherin 2 ISO MGI:MGI:1856523|MGI:MGI:6367794|MGI:MGI:97998 (MGI:MGI:3610839|PMID:15964665), (MGI:MGI:4849309|PMID:21052544), (MGI:MGI:5905515|PMID:28053051) RGD PMID:15964665, PMID:21052544, PMID:28053051 MGI:MGI:3610839, MGI:MGI:4849309, MGI:MGI:5905515 NCBI chr 9:16,085,933...16,386,176 JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133, PMID:8453763 RGD:9831439, RGD:9831456 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:MGI:97858 (MGI:MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:MGI:81656 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:MGI:97857 (MGI:MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:MGI:81656 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rbp4 retinol binding protein 4 ISO MGI:MGI:2445721 (MGI:MGI:2150869|PMID:11562477) RGD PMID:11562477 MGI:MGI:2150869 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Rd3 retinal degeneration 3, GUCY2D regulator IBA
ISO
PMID:21873635
(MGI:MGI:4849309|PMID:21052544), (MGI:MGI:52860|PMID:8486383)
RGD PMID:8486383, PMID:21052544, PMID:21873635 MGI:MGI:4849309, MGI:MGI:52860, RGD:13792537 NCBI chr13:110,739,645...110,749,167
Ensembl chr13:110,743,098...110,748,365
JBrowse link
G Ret ret proto-oncogene IEP RGD PMID:16650834 RGD:2324945 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
G Rho rhodopsin ISO
IEA
(MGI:MGI:4849309|PMID:21052544)
GO_REF:0000107
RGD
Ensembl
PMID:21052544 GO_REF:0000107, MGI:MGI:4849309 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298
JBrowse link
G Rnpep arginyl aminopeptidase IEP RGD PMID:15500823 RGD:2325937 NCBI chr13:52,092,863...52,124,006
Ensembl chr13:52,092,859...52,111,363
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO MGI:MGI:102791|MGI:MGI:2181662 (MGI:MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:MGI:5905515 NCBI chr 1:225,126,732...225,128,740
Ensembl chr 1:225,126,734...225,128,740
JBrowse link
G Rorb RAR-related orphan receptor B ISO
ISS
(MGI:MGI:5546314|PMID:23652001)
GO_REF:0000024
RGD
UniProt
PMID:23652001 GO_REF:0000024, MGI:MGI:5546314 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO
IBA
(MGI:MGI:4849309|PMID:21052544)
PMID:21873635
RGD PMID:21052544, PMID:21873635 MGI:MGI:4849309, RGD:13792537 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rp1l1 RP1 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:47,344,380...47,384,461
Ensembl chr15:47,373,120...47,383,508
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Rpl24 ribosomal protein L24 ISO MGI:MGI:1856685 (MGI:MGI:1097191|PMID:9331275), (MGI:MGI:1332363|PMID:10049578) RGD PMID:9331275, PMID:10049578 MGI:MGI:1097191, MGI:MGI:1332363 NCBI chr11:47,116,885...47,122,093
Ensembl chr11:47,116,886...47,122,095
JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEP RGD PMID:2647502 RGD:5133699 NCBI chr 1:167,538,387...167,562,688
Ensembl chr 1:167,538,263...167,562,688
JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:21738387 RGD:8655555 NCBI chr10:62,241,750...62,254,145
Ensembl chr10:62,241,756...62,254,287
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:MGI:3693412 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Slc4a5 solute carrier family 4 member 5 ISO (MGI:MGI:5292606|PMID:21705333) RGD PMID:21705333 MGI:MGI:5292606 NCBI chr 4:114,918,488...115,002,290
Ensembl chr 4:114,918,488...115,002,300
JBrowse link
G Sox8 SRY-box transcription factor 8 ISO
ISS
MGI:MGI:98371 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
MGI:MGI:98370 (MGI:MGI:4368088|PMID:19490914)
GO_REF:0000024
RGD
UniProt
PMID:19490914 GO_REF:0000024, MGI:MGI:4368088 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 ISO MGI:MGI:4440463 (MGI:MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:MGI:4439200 NCBI chr20:37,463,879...37,701,268
Ensembl chr20:37,465,278...37,700,937
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:3852642 (MGI:MGI:4819740|PMID:20711468) RGD PMID:20711468 MGI:MGI:4819740 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO (MGI:MGI:3826282|PMID:18973577) RGD PMID:18973577 MGI:MGI:3826282 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 ISO (MGI:MGI:3826300|PMID:18926818) RGD PMID:18926818 MGI:MGI:3826300 NCBI chr 3:152,906,961...152,924,380
Ensembl chr 3:152,909,189...152,924,377
JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 ISO (PMID:24791901) RGD PMID:24791901 NCBI chr 6:109,693,915...109,910,479
Ensembl chr 6:109,710,781...109,879,607
JBrowse link
G Tub TUB bipartite transcription factor ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr 1:173,550,929...173,629,550
Ensembl chr 1:173,607,101...173,625,550
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr20:7,931,673...7,943,601
Ensembl chr20:7,931,674...7,943,575
JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr15:86,153,624...86,198,127
Ensembl chr15:86,153,628...86,198,127
JBrowse link
G Ush2a usherin IEP RGD PMID:12160733 RGD:634438 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
JBrowse link
G Vax2 ventral anterior homeobox 2 ISO
IEA
(MGI:MGI:1349226|PMID:10595508)
GO_REF:0000107
RGD
Ensembl
PMID:10595508 GO_REF:0000107, MGI:MGI:1349226 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
G Zfp513 zinc finger protein 513 ISO
ISS
(PMID:20797688)
GO_REF:0000024
RGD
UniProt
PMID:20797688 GO_REF:0000024 NCBI chr 6:26,537,707...26,541,051
Ensembl chr 6:26,537,707...26,541,048
JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO
ISS
UniProtKB:F8W3V6 (MGI:MGI:5306539|PMID:21959375)
GO_REF:0000024
RGD
UniProt
PMID:21959375 GO_REF:0000024, MGI:MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Arl6 ADP-ribosylation factor like GTPase 6 ISO MGI:MGI:4442928|MGI:MGI:5310744 (MGI:MGI:4442100|PMID:20333246), (MGI:MGI:5306530|PMID:22139371) RGD PMID:20333246, PMID:22139371 MGI:MGI:4442100, MGI:MGI:5306530 NCBI chr11:42,858,476...42,884,324
Ensembl chr11:42,858,478...42,884,603
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:29,538,380...29,562,774
Ensembl chr 5:29,538,380...29,562,773
JBrowse link
G