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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of cell-substrate junction organization
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Accession:GO:0150116 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of cell-substrate junction organization.


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regulation of cell-substrate junction organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 JBrowse link 2 187,911,530 187,914,930 RGD:1624291
negative regulation of focal adhesion assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvrl1 activin A receptor like type 1 JBrowse link 7 142,769,942 142,787,336 RGD:1624291
G Apod apolipoprotein D JBrowse link 11 72,705,204 72,726,263 RGD:1600115
RGD:1624291
G Arhgap6 Rho GTPase activating protein 6 JBrowse link X 26,314,561 26,845,242 RGD:1624291
G Bcas3 BCAS3, microtubule associated cell migration factor JBrowse link 10 72,756,548 73,271,851 RGD:1624291
G Clasp2 cytoplasmic linker associated protein 2 JBrowse link 8 122,003,719 122,185,495 RGD:1624291
G Coro1c coronin 1C JBrowse link 12 48,481,741 48,554,054 RGD:1624291
G Dlc1 DLC1 Rho GTPase activating protein JBrowse link 16 58,776,489 59,247,752 RGD:1600115
RGD:1624291
G Dmtn dematin actin binding protein JBrowse link 15 52,292,762 52,320,385 RGD:1624291
G Dusp22 dual specificity phosphatase 22 JBrowse link 17 34,986,589 35,037,297 RGD:1624291
G Fam107a family with sequence similarity 107, member A JBrowse link 15 18,399,145 18,415,959 RGD:1600115
RGD:1624291
G Itgb1bp1 integrin subunit beta 1 binding protein 1 JBrowse link 6 43,348,927 43,363,633 RGD:1624291
G Lrp1 LDL receptor related protein 1 JBrowse link 7 70,846,313 70,927,028 RGD:13800550
G Mmp14 matrix metallopeptidase 14 JBrowse link 15 33,074,441 33,083,666 RGD:1582604
G Phldb2 pleckstrin homology-like domain, family B, member 2 JBrowse link 11 60,042,879 60,051,229 RGD:1624291
RGD:1600115
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:1624291
G Rcc2 regulator of chromosome condensation 2 JBrowse link 5 159,220,531 159,236,313 RGD:1624291
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:7248703
positive regulation of focal adhesion assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase JBrowse link 3 10,041,820 10,145,076 RGD:1624291
G Cfl1 cofilin 1 JBrowse link 1 220,869,805 220,873,337 RGD:11570550
G Col16a1 collagen type XVI alpha 1 chain JBrowse link 5 148,257,030 148,311,645 RGD:1624291
G Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 JBrowse link 7 94,479,931 94,563,086 RGD:9685417
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 13 35,622,472 35,673,449 RGD:1624291
G Fmn1 formin 1 JBrowse link 3 104,783,093 105,170,761 RGD:1624291
RGD:1600115
G Hrg histidine-rich glycoprotein JBrowse link 11 81,621,274 81,639,938 RGD:1600115
RGD:1624291
G Iqgap1 IQ motif containing GTPase activating protein 1 JBrowse link 1 142,525,041 142,615,673 RGD:11049552
G Itgb1bp1 integrin subunit beta 1 binding protein 1 JBrowse link 6 43,348,927 43,363,633 RGD:1624291
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:1624291
RGD:1600115
G Lims1 LIM zinc finger domain containing 1 JBrowse link 20 27,895,981 28,004,767 RGD:1624291
G LOC681544 similar to histidine-rich glycoprotein RGD:1600115
G Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 JBrowse link 9 46,657,444 46,782,545 RGD:1624291
G Myh9 myosin, heavy chain 9 JBrowse link 7 118,740,005 118,792,507 RGD:12798522
G Myoc myocilin JBrowse link 13 80,517,531 80,527,928 RGD:1600115
RGD:1624291
G Nrp1 neuropilin 1 JBrowse link 19 61,332,351 61,486,166 RGD:1624291
G Ppm1f protein phosphatase, Mg2+/Mn2+ dependent, 1F JBrowse link 11 88,313,709 88,343,726 RGD:1624291
RGD:1600115
G Ptprj protein tyrosine phosphatase, receptor type, J JBrowse link 3 79,233,519 79,390,956 RGD:1624291
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:1624291
G Rock1 Rho-associated coiled-coil containing protein kinase 1 JBrowse link 18 1,273,490 1,390,790 RGD:1600115
RGD:1624291
G S100a10 S100 calcium binding protein A10 JBrowse link 2 193,892,589 193,901,236 RGD:1624291
G Sdc4 syndecan 4 JBrowse link 3 160,872,503 160,891,190 RGD:2312327
G Smad3 SMAD family member 3 JBrowse link 8 68,569,530 68,678,349 RGD:2300418
G Tek TEK receptor tyrosine kinase JBrowse link 5 113,725,717 113,852,799 RGD:1624291
G Thy1 Thy-1 cell surface antigen JBrowse link 8 48,382,121 48,387,271 RGD:1624291
RGD:12793016
G Tsc1 TSC complex subunit 1 JBrowse link 3 7,219,955 7,269,063 RGD:1624291
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
RGD:1600115
G Wnt4 Wnt family member 4 JBrowse link 5 155,649,238 155,668,065 RGD:1624291
RGD:1600115
positive regulation of focal adhesion disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arf6 ADP-ribosylation factor 6 JBrowse link 6 91,697,109 91,698,257 RGD:1624291
G Dusp3 dual specificity phosphatase 3 JBrowse link 10 89,904,578 89,918,296 RGD:1624291
G Iqsec1 IQ motif and Sec7 domain ArfGEF 1 JBrowse link 4 123,400,717 123,454,656 RGD:1624291
G Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 JBrowse link 9 46,657,444 46,782,545 RGD:1624291
G Mapre2 microtubule-associated protein, RP/EB family, member 2 JBrowse link 18 14,814,149 15,780,290 RGD:1624291
regulation of focal adhesion assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actg1 actin, gamma 1 JBrowse link 10 109,518,429 109,521,288 RGD:1624291
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 JBrowse link 12 2,133,935 2,157,403 RGD:1624291
G Clasp1 cytoplasmic linker associated protein 1 JBrowse link 13 34,365,038 34,584,651 RGD:1624291
G Coro1c coronin 1C JBrowse link 12 48,481,741 48,554,054 RGD:1624291
G Dapk3 death-associated protein kinase 3 JBrowse link 7 11,392,436 11,400,855 RGD:1624291
G Dusp3 dual specificity phosphatase 3 JBrowse link 10 89,904,578 89,918,296 RGD:1624291
G Efna5 ephrin A5 JBrowse link 9 110,054,002 110,329,878 RGD:1624291
RGD:1600115
G Epha3 Eph receptor A3 JBrowse link 11 421,253 783,037 RGD:1600115
RGD:1624291
G Gpm6b glycoprotein m6b JBrowse link X 29,604,607 29,751,174 RGD:1600115
RGD:1624291
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link 3 105,203,309 105,214,989 RGD:1624291
G Ldb1 LIM domain binding 1 JBrowse link 1 265,772,729 265,798,442 RGD:1624291
G Limch1 LIM and calponin homology domains 1 JBrowse link 14 42,760,363 43,072,976 RGD:1624291
RGD:13792537
G LOC680875 similar to dystonin isoform 1 JBrowse link 7 117,180,653 117,187,739 RGD:13792537
G Macf1 microtubule-actin crosslinking factor 1 JBrowse link 5 141,039,455 141,363,524 RGD:1600115
RGD:13792537
RGD:1624291
G Peak1 pseudopodium-enriched atypical kinase 1 JBrowse link 8 60,861,742 61,080,128 RGD:1624291
G Ptk2 protein tyrosine kinase 2 JBrowse link 7 114,436,419 114,611,317 RGD:1600115
RGD:1624291
G Rhod ras homolog family member D JBrowse link 1 219,668,352 219,682,287 RGD:1624291
G Slk STE20-like kinase JBrowse link 1 267,359,761 267,415,735 RGD:1600115
RGD:1624291
G Tsc1 TSC complex subunit 1 JBrowse link 3 7,219,955 7,269,063 RGD:1601406
G Vcl vinculin JBrowse link 15 3,455,211 3,544,738 RGD:1624291
RGD:1600115
G Wdpcp WD repeat containing planar cell polarity effector JBrowse link 14 106,393,959 106,759,511 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    regulation of biological process 12959
      regulation of cellular process 12442
        regulation of cellular component organization 2611
          regulation of cell-substrate junction organization 67
            negative regulation of cell-substrate junction organization + 17
            positive regulation of cell-substrate junction organization + 32
            regulation of cell-substrate junction assembly + 63
            regulation of focal adhesion disassembly + 5
Path 2
Term Annotations click to browse term
  biological_process 19858
    cellular process 18618
      cellular component organization or biogenesis 6706
        cellular component organization 6456
          cell junction organization 788
            cell-substrate junction organization 99
              regulation of cell-substrate junction organization 67
                negative regulation of cell-substrate junction organization + 17
                positive regulation of cell-substrate junction organization + 32
                regulation of cell-substrate junction assembly + 63
                regulation of focal adhesion disassembly + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.