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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of cell-substrate junction organization
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Accession:GO:0150117 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of cell-substrate junction organization.


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positive regulation of focal adhesion assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO (PMID:24863063) RGD PMID:24863063 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Cfl1 cofilin 1 IMP RGD PMID:24093776 RGD:11570550 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Col16a1 collagen type XVI alpha 1 chain ISO (PMID:24466237) RGD PMID:24466237 NCBI chr 5:148,257,030...148,311,645
Ensembl chr 5:148,257,642...148,311,645
JBrowse link
G Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 IDA RGD PMID:22139091 RGD:9685417 NCBI chr 7:94,479,931...94,563,086
Ensembl chr 7:94,480,396...94,563,001
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Fermt2 fermitin family member 2 ISO (PMID:29496737) RGD PMID:29496737 NCBI chr15:19,807,806...19,876,557
Ensembl chr15:19,807,808...19,876,408
JBrowse link
G Fmn1 formin 1 ISO MGI:MGI:3800994 (MGI:MGI:3798334|PMID:18560567) RGD PMID:18560567 MGI:MGI:3798334 NCBI chr 3:104,783,093...105,170,761
Ensembl chr 3:104,816,987...105,086,436
JBrowse link
G Hrg histidine-rich glycoprotein IEA
ISO
ISS
GO_REF:0000107
(PMID:14744774), (PMID:16436387)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14744774, PMID:16436387 GO_REF:0000024, GO_REF:0000107 NCBI chr11:81,621,274...81,639,938
Ensembl chr11:81,621,283...81,639,952
JBrowse link
G Iqgap1 IQ motif containing GTPase activating protein 1 IMP RGD PMID:23657573 RGD:11049552 NCBI chr 1:142,525,041...142,615,673
Ensembl chr 1:142,525,046...142,615,673
JBrowse link
G Itgb1bp1 integrin subunit beta 1 binding protein 1 ISO (MGI:MGI:5486551|PMID:17654484) RGD PMID:17654484 MGI:MGI:5486551 NCBI chr 6:43,348,927...43,363,633
Ensembl chr 6:43,348,958...43,363,335
JBrowse link
G Kdr kinase insert domain receptor ISO
IEA
(PMID:12820653)
GO_REF:0000107
RGD
Ensembl
PMID:12820653 GO_REF:0000107 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183
JBrowse link
G Lims1 LIM zinc finger domain containing 1 ISO (PMID:20926685) RGD PMID:20926685 NCBI chr20:27,895,981...28,004,767
Ensembl chr20:27,954,433...28,002,082
JBrowse link
G LOC681544 similar to histidine-rich glycoprotein ISS GO_REF:0000024 UniProt GO_REF:0000024 Ensembl chr11:81,621,283...81,639,952 JBrowse link
G Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 ISO (MGI:MGI:6189265|PMID:25490267) RGD PMID:25490267 MGI:MGI:6189265 NCBI chr 9:46,657,444...46,782,545
Ensembl chr 9:46,657,575...46,782,545
JBrowse link
G Myh9 myosin, heavy chain 9 IMP RGD PMID:21598299 RGD:12798522 NCBI chr 7:118,740,005...118,792,507
Ensembl chr 7:118,741,110...118,792,625
JBrowse link
G Myoc myocilin IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:18855004)
Ensembl
UniProt
RGD
PMID:18855004 GO_REF:0000024, GO_REF:0000107 NCBI chr13:80,517,531...80,527,928
Ensembl chr13:80,517,536...80,527,928
JBrowse link
G Nrp1 neuropilin 1 ISO (PMID:24863063) RGD PMID:24863063 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Ppm1f protein phosphatase, Mg2+/Mn2+ dependent, 1F ISO
ISS
(PMID:20016286)
GO_REF:0000024
RGD
UniProt
PMID:20016286 GO_REF:0000024 NCBI chr11:88,313,709...88,343,726
Ensembl chr11:88,313,709...88,343,627
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 IMP RGD PMID:16905534 RGD:39456088 NCBI chr12:40,895,515...40,955,999
Ensembl chr12:40,895,515...40,955,999
JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J ISO (PMID:21091576) RGD PMID:21091576 NCBI chr 3:79,233,519...79,390,956
Ensembl chr 3:79,233,525...79,390,956
JBrowse link
G Rac1 Rac family small GTPase 1 ISO (PMID:23129259) RGD PMID:23129259 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5486551|PMID:17654484)
Ensembl
UniProt
RGD
PMID:17654484 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5486551 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G S100a10 S100 calcium binding protein A10 ISO (PMID:23129259) RGD PMID:23129259 NCBI chr 2:193,892,589...193,901,236
Ensembl chr 2:193,892,589...193,901,236
JBrowse link
G Sdc4 syndecan 4 IMP RGD PMID:10504291 RGD:2312327 NCBI chr 3:160,872,503...160,891,190
Ensembl chr 3:160,872,503...160,891,190
JBrowse link
G Smad3 SMAD family member 3 IDA RGD PMID:15987742 RGD:2300418 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tek TEK receptor tyrosine kinase ISO (PMID:18425120) RGD PMID:18425120 NCBI chr 5:113,725,717...113,852,799
Ensembl chr 5:113,725,717...113,852,799
JBrowse link
G Thy1 Thy-1 cell surface antigen ISO
ISS
(PMID:18346467)
(MGI:MGI:3796911|PMID:18346467)
RGD PMID:18346467, PMID:18346467 MGI:MGI:3796911, RGD:12793016 NCBI chr 8:48,382,121...48,387,271
Ensembl chr 8:48,382,121...48,386,935
JBrowse link
G Tsc1 TSC complex subunit 1 ISO (PMID:10806479) RGD PMID:10806479 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145
JBrowse link
G Vegfa vascular endothelial growth factor A ISO
ISS
(PMID:16489009)
GO_REF:0000024
RGD
UniProt
PMID:16489009 GO_REF:0000024 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Wnt4 Wnt family member 4 ISO
IEA
UniProtKB:P01112 (MGI:MGI:5487484|PMID:23027131)
GO_REF:0000107
RGD
Ensembl
PMID:23027131 GO_REF:0000107, MGI:MGI:5487484 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
positive regulation of focal adhesion disassembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf6 ADP-ribosylation factor 6 ISO (MGI:MGI:6189265|PMID:25490267) RGD PMID:25490267 MGI:MGI:6189265 NCBI chr 6:91,697,109...91,698,257
Ensembl chr 6:91,697,109...91,698,255
JBrowse link
G Dusp3 dual specificity phosphatase 3 ISO (PMID:28759036) RGD PMID:28759036 NCBI chr10:89,904,578...89,918,296
Ensembl chr10:89,904,560...89,918,427
JBrowse link
G Iqsec1 IQ motif and Sec7 domain ArfGEF 1 ISO (MGI:MGI:6189265|PMID:25490267) RGD PMID:25490267 MGI:MGI:6189265 NCBI chr 4:123,400,717...123,454,656
Ensembl chr 4:123,307,624...123,453,478
JBrowse link
G Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 ISO (MGI:MGI:6189265|PMID:25490267) RGD PMID:25490267 MGI:MGI:6189265 NCBI chr 9:46,657,444...46,782,545
Ensembl chr 9:46,657,575...46,782,545
JBrowse link
G Mapre2 microtubule-associated protein, RP/EB family, member 2 ISO (MGI:MGI:6189265|PMID:25490267) RGD PMID:25490267 MGI:MGI:6189265 NCBI chr18:14,814,149...15,780,290 JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO (MGI:MGI:6450670|PMID:11038173) RGD PMID:11038173 MGI:MGI:6450670 NCBI chr 2:31,742,326...31,826,882
Ensembl chr 2:31,745,088...31,826,867
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    positive regulation of biological process 6652
      positive regulation of cellular process 6149
        positive regulation of cellular component organization 1262
          positive regulation of cell-substrate junction organization 35
            positive regulation of focal adhesion assembly 30
            positive regulation of focal adhesion disassembly 6
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          cell junction organization 795
            cell-substrate junction organization 103
              regulation of cell-substrate junction organization 71
                positive regulation of cell-substrate junction organization 35
                  positive regulation of focal adhesion assembly 30
                  positive regulation of focal adhesion disassembly 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.