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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of long-term synaptic depression
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Accession:GO:1900452 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of long term synaptic depression.
Synonyms:broad_synonym: regulation of long term depression
 related_synonym: regulation of LTD


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regulation of long-term synaptic depression term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity-regulated cytoskeleton-associated protein ISS
ISO
GO_REF:0000024
(MGI:MGI:6148485|PMID:29264923)
UniProt
RGD
PMID:29264923 GO_REF:0000024, MGI:MGI:6148485 NCBI chr 7:115,907,097...115,911,059
Ensembl chr 7:115,907,097...115,910,541
JBrowse link
G Bcl2l1 Bcl2-like 1 IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Dgki diacylglycerol kinase, iota ISO MGI:MGI:3584141 (MGI:MGI:4936793|PMID:21119615) RGD PMID:21119615 MGI:MGI:4936793 NCBI chr 4:64,365,115...64,831,473
Ensembl chr 4:64,374,342...64,831,473
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 ISO
IEA
ISS
(MGI:MGI:5320264|PMID:21795692)
GO_REF:0000107
RGD
Ensembl
PMID:21795692, PMID:21795692 GO_REF:0000107, MGI:MGI:5320264, RGD:7349315 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Sorcs3 sortilin-related VPS10 domain containing receptor 3 ISO MGI:MGI:5562419 (MGI:MGI:5559089|PMID:24069373) RGD PMID:24069373 MGI:MGI:5559089 NCBI chr 1:267,986,305...268,620,331
Ensembl chr 1:268,189,277...268,620,331
JBrowse link
negative regulation of long-term synaptic depression term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor ISO MGI:MGI:95808 (MGI:MGI:5529732|PMID:24259587) RGD PMID:24259587 MGI:MGI:5529732 NCBI chr13:51,042,111...51,076,913
Ensembl chr13:51,042,248...51,076,852
JBrowse link
G Ager advanced glycosylation end product-specific receptor IEA
ISO
GO_REF:0000107
ComplexPortal:CPX-1134 (PMID:20739563)
Ensembl
RGD
PMID:20739563 GO_REF:0000107 NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079
JBrowse link
G Fmr1 FMRP translational regulator 1 ISO
ISS
(MGI:MGI:2136541|PMID:11438589)
GO_REF:0000024
RGD
UniProt
PMID:11438589 GO_REF:0000024, MGI:MGI:2136541 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
positive regulation of long-term synaptic depression term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy8 adenylate cyclase 8 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:1860567|PMID:10864938)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:10864938 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1860567 NCBI chr 7:105,353,883...105,593,372
Ensembl chr 7:105,353,913...105,592,804
JBrowse link
G Cbln1 cerebellin 1 precursor ISO (PMID:27418511) RGD PMID:27418511 NCBI chr19:20,607,507...20,611,316
Ensembl chr19:20,607,507...20,611,316
JBrowse link
G Fmr1 FMRP translational regulator 1 IMP RGD PMID:28894415 RGD:38501107 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 IEA
ISO
GO_REF:0000107
(PMID:27418511)
Ensembl
RGD
PMID:27418511 GO_REF:0000107 NCBI chr 4:94,068,112...95,476,864
Ensembl chr 4:94,696,965...95,442,778
JBrowse link
G Iqsec2 IQ motif and Sec7 domain ArfGEF 2 IMP RGD PMID:27009485 RGD:11049506 NCBI chr  X:22,212,137...22,293,810
Ensembl chr  X:22,212,132...22,294,402
JBrowse link
G Kcnb1 potassium voltage-gated channel subfamily B member 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5634878|PMID:24494598)
Ensembl
UniProt
RGD
PMID:24494598 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5634878 NCBI chr 3:163,850,785...163,935,610
Ensembl chr 3:163,850,785...163,935,617
JBrowse link
G Mapt microtubule-associated protein tau IMP RGD PMID:24298146 RGD:10412705 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Pirb paired Ig-like receptor B ISO UniProtKB:P05067|UniProtKB:P49768 (MGI:MGI:5511064|PMID:24052308) RGD PMID:24052308 MGI:MGI:5511064 NCBI chr 1:64,074,097...64,081,568
Ensembl chr 1:64,074,231...64,081,438
JBrowse link
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A IMP RGD PMID:16899074 RGD:10002752 NCBI chr 4:29,976,485...30,247,371
Ensembl chr 4:29,978,739...30,241,911
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:21508097 RGD:10043164 NCBI chr 5:2,257,910...2,497,429 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    biological regulation 13773
      regulation of biological quality 4280
        regulation of synaptic plasticity 342
          regulation of long-term synaptic depression 17
            negative regulation of long-term synaptic depression 3
            positive regulation of long-term synaptic depression 10
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cell communication 7664
        cell-cell signaling 1738
          synaptic signaling 917
            trans-synaptic signaling 889
              anterograde trans-synaptic signaling 880
                chemical synaptic transmission 880
                  modulation of chemical synaptic transmission 656
                    regulation of synaptic plasticity 342
                      long-term synaptic depression 35
                        regulation of long-term synaptic depression 17
                          negative regulation of long-term synaptic depression 3
                          positive regulation of long-term synaptic depression 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.