Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
go back to main search page
Accession:GO:1901522 term browser browse the term
Definition:Any positive regulation of transcription from RNA polymerase II promoter that is involved in cellular response to chemical stimulus.
Synonyms:exact_synonym: positive regulation of transcription from Pol II promoter involved in cellular response to chemical stimulus;   stimulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   up regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   upregulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
 narrow_synonym: activation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   stimulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
 related_synonym: activation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   positive regulation of gene-specific transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   positive regulation of global transcription from Pol II promoter involved in cellular response to chemical stimulus;   up regulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   upregulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus


show annotations for term's descendants           Sort by:
 
positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 ISO
IEA
(PMID:20843790)
GO_REF:0000107
RGD
Ensembl
PMID:20843790 GO_REF:0000107 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Dlx5 distal-less homeobox 5 IEA
ISO
GO_REF:0000107
(MGI:5487530|PMID:20843790)
Ensembl
RGD
PMID:20843790 GO_REF:0000107, MGI:5487530 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO (PMID:24955228) RGD PMID:24955228 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G Runx2 RUNX family transcription factor 2 IEA
ISO
GO_REF:0000107
(MGI:5487530|PMID:20843790)
Ensembl
RGD
PMID:20843790 GO_REF:0000107, MGI:5487530 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Rxra retinoid X receptor alpha ISO (MGI:85343|PMID:8954108) RGD PMID:8954108 MGI:85343 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Rxrg retinoid X receptor gamma ISO (MGI:60180|PMID:8391126) RGD PMID:8391126 MGI:60180 NCBI chr13:85,818,473...85,868,555
Ensembl chr13:85,818,427...85,868,552
JBrowse link
G Smad1 SMAD family member 1 IEA
ISO
GO_REF:0000107
UniProtKB:P97454 (MGI:5487530|PMID:20843790)
Ensembl
RGD
PMID:20843790 GO_REF:0000107, MGI:5487530 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad5 SMAD family member 5 ISO UniProtKB:P70340 (MGI:5487530|PMID:20843790) RGD PMID:20843790 MGI:5487530 NCBI chr17:8,307,448...8,336,996
Ensembl chr17:8,311,796...8,331,032
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to calcium ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carf calcium responsive transcription factor IDA
IBA
IEA
ISO
PMID:11832226
PMID:21873635
GO_REF:0000107
(PMID:11832226), (PMID:22174809)
Ensembl
RGD
PMID:11832226, PMID:22174809, PMID:11832226, PMID:21873635 GO_REF:0000107, RGD:8553337, RGD:13792537 NCBI chr 9:66,878,526...66,928,658
Ensembl chr 9:66,888,393...66,926,377
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hif1a hypoxia inducible factor 1 subunit alpha IEA
ISO
ISS
GO_REF:0000107
(PMID:19652095), (PMID:22735262), (PMID:24681946)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19652095, PMID:22735262, PMID:24681946 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 ISO (PMID:24844779) RGD PMID:24844779 NCBI chr 3:62,497,568...62,525,146
Ensembl chr 3:62,497,571...62,524,996
JBrowse link
G Notch1 notch receptor 1 ISS
ISO
GO_REF:0000024
(MGI:5319604|PMID:18299578)
UniProt
RGD
PMID:18299578 GO_REF:0000024, MGI:5319604 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO (PMID:23303788) RGD PMID:23303788 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
G Tp53 tumor protein p53 ISO (MGI:4867601|PMID:20935145) RGD PMID:20935145 MGI:4867601 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Vegfa vascular endothelial growth factor A ISO (PMID:19652095) RGD PMID:19652095 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to iron term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfya nuclear transcription factor Y subunit alpha IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,551,752...14,577,002
Ensembl chr 9:14,551,758...14,576,967
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 ISO
IBA
IMP
(PMID:21113145)
PMID:21873635
PMID:23392669
RGD PMID:21113145, PMID:21873635, PMID:23392669 RGD:13792537, RGD:10047168 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:16314513)
Ensembl
UniProt
RGD
PMID:16314513 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:156,937,746...157,099,328
Ensembl chr 3:156,937,733...157,099,306
JBrowse link
G Mt3 metallothionein 3 ISO
ISS
(PMID:18554677)
GO_REF:0000024
RGD
UniProt
PMID:18554677 GO_REF:0000024 NCBI chr19:11,324,708...11,326,112
Ensembl chr19:11,324,698...11,326,139
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 IMP PMID:16314513 UniProt PMID:16314513 RGD:8655528 NCBI chr 3:62,497,568...62,525,146
Ensembl chr 3:62,497,571...62,524,996
JBrowse link
G Sesn2 sestrin 2 ISO (PMID:23274085) RGD PMID:23274085 NCBI chr 5:150,684,891...150,703,846
Ensembl chr 5:150,684,133...150,704,117
JBrowse link
positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein NOT ISO (PMID:21803450) RGD PMID:21803450 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Creb3 cAMP responsive element binding protein 3 ISO (PMID:16940180), (PMID:18391022) RGD PMID:16940180, PMID:18391022 NCBI chr 5:59,063,532...59,068,196
Ensembl chr 5:59,063,531...59,068,188
JBrowse link
G Ep300 E1A binding protein p300 ISO (MGI:5607229|PMID:20955178) RGD PMID:20955178 MGI:5607229 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Xbp1 X-box binding protein 1 ISO
IBA
ISS
(PMID:25239945)
(MGI:5605954|PMID:14559994), (MGI:5607229|PMID:20955178), (MGI:5607243|PMID:16332684)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:14559994, PMID:16332684, PMID:20955178, PMID:25239945, PMID:21873635 GO_REF:0000024, MGI:5605954, MGI:5607229, MGI:5607243, RGD:13792537 NCBI chr14:85,753,736...85,758,820
Ensembl chr14:85,753,760...85,758,145
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    response to stimulus 10580
      response to chemical 6337
        cellular response to chemical stimulus 3527
          positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus 24
            positive regulation of transcription from RNA polymerase II promoter by pheromones 0
            positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance 0
            positive regulation of transcription from RNA polymerase II promoter in response to calcium ion 1
            positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion 0
            positive regulation of transcription from RNA polymerase II promoter in response to ethanol 0
            positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure 0
            positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
            positive regulation of transcription from RNA polymerase II promoter in response to iron 1
            positive regulation of transcription from RNA polymerase II promoter in response to maltose 0
            positive regulation of transcription from RNA polymerase II promoter in response to menadione 0
            positive regulation of transcription from RNA polymerase II promoter in response to methylglyoxal 0
            positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 5
            positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 4
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        cellular aromatic compound metabolic process 5700
          nucleobase-containing compound metabolic process 5488
            nucleic acid metabolic process 4984
              RNA metabolic process 4468
                regulation of RNA metabolic process 3613
                  regulation of RNA biosynthetic process 3341
                    regulation of nucleic acid-templated transcription 3336
                      regulation of transcription, DNA-templated 3287
                        positive regulation of transcription, DNA-templated 1696
                          positive regulation of transcription by RNA polymerase II 1392
                            positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus 24
                              positive regulation of transcription from RNA polymerase II promoter by pheromones 0
                              positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance 0
                              positive regulation of transcription from RNA polymerase II promoter in response to calcium ion 1
                              positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion 0
                              positive regulation of transcription from RNA polymerase II promoter in response to ethanol 0
                              positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure 0
                              positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
                              positive regulation of transcription from RNA polymerase II promoter in response to iron 1
                              positive regulation of transcription from RNA polymerase II promoter in response to maltose 0
                              positive regulation of transcription from RNA polymerase II promoter in response to menadione 0
                              positive regulation of transcription from RNA polymerase II promoter in response to methylglyoxal 0
                              positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 5
                              positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 4
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.